update python rpc methods

Author: ehigham

hail/python/hail/backend/backend.py

@@ -3,7 +3,7 @@
 import zipfile
 from dataclasses import dataclass
 from enum import Enum
-from typing import AbstractSet, Any, ClassVar, Dict, List, Mapping, Optional, Tuple, TypeVar, Union
+from typing import AbstractSet, Any, ClassVar, Dict, List, Mapping, Optional, Set, Tuple, TypeVar, Union
 
 import orjson
 
@@ -68,15 +68,45 @@ def local_jar_information() -> LocalJarInformation:
         raise ValueError(f'Hail requires either {hail_jar} or {hail_all_spark_jar}.')
 
 
+class IRFunction:
+    def __init__(
+        self,
+        name: str,
+        type_parameters: Union[Tuple[HailType, ...], List[HailType]],
+        value_parameter_names: Union[Tuple[str, ...], List[str]],
+        value_parameter_types: Union[Tuple[HailType, ...], List[HailType]],
+        return_type: HailType,
+        body: Expression,
+    ):
+        assert len(value_parameter_names) == len(value_parameter_types)
+        render = CSERenderer()
+        self._name = name
+        self._type_parameters = type_parameters
+        self._value_parameter_names = value_parameter_names
+        self._value_parameter_types = value_parameter_types
+        self._return_type = return_type
+        self._rendered_body = render(finalize_randomness(body._ir))
+
+    def to_dataclass(self):
+        return SerializedIRFunction(
+            name=self._name,
+            type_parameters=[tp._parsable_string() for tp in self._type_parameters],
+            value_parameter_names=list(self._value_parameter_names),
+            value_parameter_types=[vpt._parsable_string() for vpt in self._value_parameter_types],
+            return_type=self._return_type._parsable_string(),
+            rendered_body=self._rendered_body,
+        )
+
+
 class ActionTag(Enum):
-    LOAD_REFERENCES_FROM_DATASET = 1
-    VALUE_TYPE = 2
-    TABLE_TYPE = 3
-    MATRIX_TABLE_TYPE = 4
-    BLOCK_MATRIX_TYPE = 5
-    EXECUTE = 6
-    PARSE_VCF_METADATA = 7
-    IMPORT_FAM = 8
+    VALUE_TYPE = 1
+    TABLE_TYPE = 2
+    MATRIX_TABLE_TYPE = 3
+    BLOCK_MATRIX_TYPE = 4
+    EXECUTE = 5
+    PARSE_VCF_METADATA = 6
+    IMPORT_FAM = 7
+    LOAD_REFERENCES_FROM_DATASET = 8
     FROM_FASTA_FILE = 9
 
 
@@ -90,11 +120,21 @@ class IRTypePayload(ActionPayload):
     ir: str
 
 
+@dataclass
+class SerializedIRFunction:
+    name: str
+    type_parameters: List[str]
+    value_parameter_names: List[str]
+    value_parameter_types: List[str]
+    return_type: str
+    rendered_body: str
+
+
 @dataclass
 class ExecutePayload(ActionPayload):
     ir: str
+    fns: List[SerializedIRFunction]
     stream_codec: str
-    timed: bool
 
 
 @dataclass
@@ -164,17 +204,24 @@ def _valid_flags(self) -> AbstractSet[str]:
     def __init__(self):
         self._persisted_locations = dict()
         self._references = {}
+        self.functions: List[IRFunction] = []
+        self._registered_ir_function_names: Set[str] = set()
 
     @abc.abstractmethod
     def validate_file(self, uri: str):
         raise NotImplementedError
 
     @abc.abstractmethod
     def stop(self):
-        pass
+        self.functions = []
+        self._registered_ir_function_names = set()
 
     def execute(self, ir: BaseIR, timed: bool = False) -> Any:
-        payload = ExecutePayload(self._render_ir(ir), '{"name":"StreamBufferSpec"}', timed)
+        payload = ExecutePayload(
+            self._render_ir(ir),
+            fns=[fn.to_dataclass() for fn in self.functions],
+            stream_codec='{"name":"StreamBufferSpec"}',
+        )
         try:
             result, timings = self._rpc(ActionTag.EXECUTE, payload)
         except FatalError as e:
@@ -300,7 +347,6 @@ def unpersist(self, dataset: Dataset) -> Dataset:
         tempfile.__exit__(None, None, None)
         return unpersisted
 
-    @abc.abstractmethod
     def register_ir_function(
         self,
         name: str,
@@ -310,11 +356,13 @@ def register_ir_function(
         return_type: HailType,
         body: Expression,
     ):
-        pass
+        self._registered_ir_function_names.add(name)
+        self.functions.append(
+            IRFunction(name, type_parameters, value_parameter_names, value_parameter_types, return_type, body)
+        )
 
-    @abc.abstractmethod
     def _is_registered_ir_function_name(self, name: str) -> bool:
-        pass
+        return name in self._registered_ir_function_names
 
     @abc.abstractmethod
     def persist_expression(self, expr: Expression) -> Expression:

hail/python/hail/backend/local_backend.py

@@ -119,7 +119,7 @@ def register_ir_function(
         )
 
     def stop(self):
-        super().stop()
+        super(Py4JBackend, self).stop()
         self._exit_stack.close()
         uninstall_exception_handler()
 

hail/python/hail/backend/py4j_backend.py

@@ -4,7 +4,7 @@
 import socketserver
 import sys
 from threading import Thread
-from typing import Mapping, Optional, Set, Tuple
+from typing import Mapping, Optional, Tuple
 
 import orjson
 import py4j
@@ -192,8 +192,6 @@ def decode_bytearray(encoded):
         self._backend_server.start()
         self._requests_session = requests.Session()
 
-        self._registered_ir_function_names: Set[str] = set()
-
         # This has to go after creating the SparkSession. Unclear why.
         # Maybe it does its own patch?
         install_exception_handler()
@@ -239,9 +237,6 @@ def persist_expression(self, expr):
         t = expr.dtype
         return construct_expr(JavaIR(t, self._jbackend.pyExecuteLiteral(self._render_ir(expr._ir))), t)
 
-    def _is_registered_ir_function_name(self, name: str) -> bool:
-        return name in self._registered_ir_function_names
-
     def set_flags(self, **flags: Mapping[str, str]):
         available = self._jbackend.pyAvailableFlags()
         invalid = []
@@ -276,12 +271,6 @@ def add_liftover(self, name, chain_file, dest_reference_genome):
     def remove_liftover(self, name, dest_reference_genome):
         self._jbackend.pyRemoveLiftover(name, dest_reference_genome)
 
-    def _parse_value_ir(self, code, ref_map={}):
-        return self._jbackend.parse_value_ir(
-            code,
-            {k: t._parsable_string() for k, t in ref_map.items()},
-        )
-
     def _register_ir_function(self, name, type_parameters, argument_names, argument_types, return_type, code):
         self._registered_ir_function_names.add(name)
         self._jbackend.pyRegisterIR(
@@ -293,12 +282,6 @@ def _register_ir_function(self, name, type_parameters, argument_names, argument_
             code,
         )
 
-    def _parse_table_ir(self, code):
-        return self._jbackend.parse_table_ir(code)
-
-    def _parse_matrix_ir(self, code):
-        return self._jbackend.parse_matrix_ir(code)
-
     def _parse_blockmatrix_ir(self, code):
         return self._jbackend.parse_blockmatrix_ir(code)
 
@@ -310,5 +293,5 @@ def stop(self):
         self._jbackend.close()
         self._jhc.stop()
         self._jhc = None
-        self._registered_ir_function_names = set()
         uninstall_exception_handler()
+        super().stop()