Merge branch 'main' into copilot/fix-1959

Author: ClaudiaComito

.github/ISSUE_TEMPLATE/bug_report.yml

@@ -34,7 +34,7 @@ body:
       description: What version of Heat are you running?
       options:
         - main (development branch)
-        - 1.6.x
+        - 1.7.x
         - other
     validations:
       required: true
@@ -49,21 +49,25 @@ body:
         - 3.12
         - 3.11
         - '3.10'
+    validations:
+      required: true
   - type: dropdown
     id: pytorch-version
     attributes:
       label: PyTorch version
       description: What PyTorch version?
       options:
+        - '2.10'
         - 2.9
         - 2.8
         - 2.7
         - 2.6
         - 2.5
         - 2.4
         - 2.3
-        - 2.2
         - other
+    validations:
+      required: true
   - type: textarea
     id: mpi-version
     attributes:

.github/rd-release-config.yml

@@ -99,7 +99,7 @@ autolabeler:
       - '/bug/i'
       - '/resolve/i'
       - '/fix/i'
-      - '/\[pre\-commit\.ci\]/i'
+      - '/\[pre\-commit\.ci\]/i' # Do not remove, this is working as intended
     branch:
       - '/bug/i'
       - '/fix/i'

.github/workflows/ci.yaml

@@ -16,32 +16,37 @@ jobs:
           - '3.11'
           - '3.12'
           - '3.13'
+          - '3.14'
         mpi: [ 'openmpi' ]
         install-options: [ '.', '.[hdf5,netcdf,pandas,zarr]' ]
         pytorch-version:
-          - 'numpy==1.26 torch==2.2.2 torchvision==0.17.2 torchaudio==2.2.2'
           - 'torch==2.3.1 torchvision==0.18.1 torchaudio==2.3.1'
           - 'torch==2.4.1 torchvision==0.19.1 torchaudio==2.4.1'
           - 'torch==2.5.1 torchvision==0.20.1 torchaudio==2.5.1'
           - 'torch==2.6.0 torchvision==0.21.0 torchaudio==2.6.0'
           - 'torch==2.7.1 torchvision==0.22.1 torchaudio==2.7.1'
           - 'torch==2.8.0 torchvision==0.23.0 torchaudio==2.8.0'
           - 'torch==2.9.1 torchvision==0.24.1 torchaudio==2.9.1'
-        include:
-          - py-version: '3.14'
-            pytorch-version: 'torch==2.9.1 torchvision==0.24.1 torchaudio==2.9.1'
-            install-options: '.'
+          - 'torch==2.10.0 torchvision==0.25.0 torchaudio==2.10.0'
         exclude:
-          - py-version: '3.13'
-            pytorch-version: 'numpy==1.26 torch==2.2.2 torchvision==0.17.2 torchaudio==2.2.2'
+          - py-version: '3.14'
+            pytorch-version: 'torch==2.3.1 torchvision==0.18.1 torchaudio==2.3.1'
+          - py-version: '3.14'
+            pytorch-version: 'torch==2.4.1 torchvision==0.19.1 torchaudio==2.4.1'
+          - py-version: '3.14'
+            pytorch-version: 'torch==2.5.1 torchvision==0.20.1 torchaudio==2.5.1'
+          - py-version: '3.14'
+            pytorch-version: 'torch==2.6.0 torchvision==0.21.0 torchaudio==2.6.0'
+          - py-version: '3.14'
+            pytorch-version: 'torch==2.7.1 torchvision==0.22.1 torchaudio==2.7.1'
+          - py-version: '3.14'
+            pytorch-version: 'torch==2.8.0 torchvision==0.23.0 torchaudio==2.8.0'
           - py-version: '3.13'
             pytorch-version: 'torch==2.3.1 torchvision==0.18.1 torchaudio==2.3.1'
           - py-version: '3.13'
             pytorch-version: 'torch==2.4.1 torchvision==0.19.1 torchaudio==2.4.1'
           - py-version: '3.13'
             pytorch-version: 'torch==2.5.1 torchvision==0.20.1 torchaudio==2.5.1'
-          - py-version: '3.12'
-            pytorch-version: 'numpy==1.26 torch==2.2.2 torchvision==0.17.2 torchaudio==2.2.2'
           - py-version: '3.10'
             install-options: '.[hdf5,netcdf,pandas,zarr]'
 
@@ -67,7 +72,6 @@ jobs:
       - name: Test
         run: |
           pip install pytest
-          pip install ${{ matrix.pytorch-version }} --extra-index-url https://download.pytorch.org/whl/cpu
-          pip install ${{ matrix.install-options }}
+          pip install ${{ matrix.pytorch-version }} ${{ matrix.install-options }} --extra-index-url https://download.pytorch.org/whl/cpu
           mpirun -n 3 pytest heat/
           mpirun -n 4 pytest heat/

.github/workflows/codeql.yml

@@ -50,7 +50,7 @@ jobs:
 
       # Initializes the CodeQL tools for scanning.
       - name: Initialize CodeQL
-        uses: github/codeql-action/init@5d4e8d1aca955e8d8589aabd499c5cae939e33c7 # v4.31.9
+        uses: github/codeql-action/init@19b2f06db2b6f5108140aeb04014ef02b648f789 # v4.31.11
         with:
           languages: ${{ matrix.language }}
           # If you wish to specify custom queries, you can do so here or in a config file.
@@ -60,7 +60,7 @@ jobs:
       # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
       # If this step fails, then you should remove it and run the build manually (see below)
       - name: Autobuild
-        uses: github/codeql-action/autobuild@5d4e8d1aca955e8d8589aabd499c5cae939e33c7 # v4.31.9
+        uses: github/codeql-action/autobuild@19b2f06db2b6f5108140aeb04014ef02b648f789 # v4.31.11
 
       # ℹ️ Command-line programs to run using the OS shell.
       # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
@@ -73,6 +73,6 @@ jobs:
       #   ./location_of_script_within_repo/buildscript.sh
 
       - name: Perform CodeQL Analysis
-        uses: github/codeql-action/analyze@5d4e8d1aca955e8d8589aabd499c5cae939e33c7 # v4.31.9
+        uses: github/codeql-action/analyze@19b2f06db2b6f5108140aeb04014ef02b648f789 # v4.31.11
         with:
           category: "/language:${{matrix.language}}"

.github/workflows/inactivity.yml

@@ -31,3 +31,5 @@ jobs:
           stale-pr-message: "This pull request is stale because it has been open for 60 days with no activity."
           close-pr-message: "This pull request was closed because it has been inactive for 60 days since being marked as stale."
           repo-token: ${{ secrets.GITHUB_TOKEN }}
+          exempt-issue-labels: "epic,discussion,good first issue,RFC,student project"
+          exempt-pr-labels: "epic,discussion,good first issue,RFC,student project"

.github/workflows/latest-pytorch-support.yml

@@ -50,7 +50,7 @@ jobs:
         run: |
           sed -i '/torch~=/ s/'"${{ env.previous_pytorch }}"'/'"${{ env.setup_pytorch }}"'/g' pyproject.toml
       - name: Create PR from branch
-        uses: peter-evans/create-pull-request@98357b18bf14b5342f975ff684046ec3b2a07725 # v8.0.0
+        uses: peter-evans/create-pull-request@c0f553fe549906ede9cf27b5156039d195d2ece0 # v8.1.0
         with:
             base: ${{ inputs.base_branch }}
             branch: ${{ inputs.working_branch }}

.github/workflows/release-drafter.yml

@@ -18,7 +18,7 @@ jobs:
         with:
           egress-policy: audit
 
-      - uses: release-drafter/release-drafter@b1476f6e6eb133afa41ed8589daba6dc69b4d3f5 # v6.1.0
+      - uses: release-drafter/release-drafter@6db134d15f3909ccc9eefd369f02bd1e9cffdf97 # v6.2.0
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         with:

.github/workflows/release-prep.yml

@@ -33,7 +33,7 @@ jobs:
       - uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6.0.1
         with:
           ref: ${{ github.event.inputs.base_branch }}
-      - uses: release-drafter/release-drafter@b1476f6e6eb133afa41ed8589daba6dc69b4d3f5 # v6.1.0
+      - uses: release-drafter/release-drafter@6db134d15f3909ccc9eefd369f02bd1e9cffdf97 # v6.2.0
         id: release_drafter
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/scorecard.yml

@@ -72,6 +72,6 @@ jobs:
 
       # Upload the results to GitHub's code scanning dashboard.
       - name: "Upload to code-scanning"
-        uses: github/codeql-action/upload-sarif@5d4e8d1aca955e8d8589aabd499c5cae939e33c7 # v4.31.9
+        uses: github/codeql-action/upload-sarif@19b2f06db2b6f5108140aeb04014ef02b648f789 # v4.31.11
         with:
           sarif_file: results.sarif

.pre-commit-config.yaml

@@ -26,7 +26,7 @@ repos:
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.14.10
+    rev: v0.14.13
     hooks:
       # Run the linter.
       - id: ruff
@@ -45,11 +45,3 @@ repos:
       # both pre-commit and pre-push supported
       # -   id: talisman-push
       - id: talisman-commit
-  - repo: https://github.com/shellcheck-py/shellcheck-py
-    rev: v0.11.0.1
-    hooks:
-      - id: shellcheck
-  #- repo: https://github.com/jumanjihouse/pre-commit-hooks
-  #  rev: 3.0.0
-  #  hooks:
-  #    - id: shellcheck