List view

• Use loculus as data source

  Refactor CoVariants and interface with Loculus as a data source

  No due date

  •0/1 issues closed
  0% complete1 open0 closed

• Standardize file formats

  Standardize the file formats generated by CoVariants analyses to ensure integration with other tools, especially those in this proposal

  No due date
  0% complete0 open0 closed

• Improve interface

  Develop an improved overall interface that allows easier navigation of the unprecedented number of variants identified

  No due date

  •10/18 issues closed
  55% complete8 open10 closed

• Future-proof website

  Optimize backend and website functionality to handle increasingly larger data volumes well into the future, while maintaining responsive performance, through a re-write of the code base

  No due date

  •13/31 issues closed
  41% complete18 open13 closed

• Add defining mutations

  Generate and display (both computer- and human-readable) complete defining mutation lists for every Pango lineage

  No due date

  •1/1 issues closed
  100% complete0 open1 closed

• Expand App

  Incorporate and expand CoVariants in wider Nextstrain efforts to provide variant-tracking to more human viruses, such as influenza

  No due date

  •0/1 issues closed
  0% complete1 open0 closed

• Upgrade graphical pages

  Make graphical pages more interactive to users, including zooming, and customizable tables and plots

  No due date

  •4/7 issues closed
  57% complete3 open4 closed

• Dependencies

  No due date

  •59/59 issues closed
  100% complete0 open59 closed