From c0ef9c332ecb8a9760b847a8b07d5fc9d28c9f59 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Tue, 18 Mar 2025 11:06:03 +0100 Subject: [PATCH 01/41] Use WKBElement Geography for Coordinates --- CHANGELOG.md | 3 +- nbs/create_grid.ipynb | 6 +- poetry.lock | 1214 ++++++++++++++++++----------------- pyproject.toml | 1 + pypsdm/db/weather/models.py | 41 +- 5 files changed, 655 insertions(+), 610 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 9692620..6f6e7c1 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -19,7 +19,8 @@ All notable changes to this project will be documented in this file. - Adapt to recent PSDM changes with regard to energy management systems [#164](https://github.com/ie3-institute/pypsdm/issue/164) - Removed node from create method of energy management systems [#267](https://github.com/ie3-institute/pypsdm/issue/267) - Changed default value for `cos_Phi` of create method of `ElectricVehicleChargingStations` to 1.0 [#272](https://github.com/ie3-institute/pypsdm/issue/272) -- Fix `create_grid` notebook to PSDM changes with respect to Em [#281](https://github.com/ie3-institute/pypsdm/issues/281) +- Fix `create_grid` notebook to PSDM changes with respect to Em [#281](https://github.com/ie3-institute/pypsdm/issues/281) +- Adapt Coordinate type to use WKBElement Geography [#287](https://github.com/ie3-institute/pypsdm/issues/287) ### Removed diff --git a/nbs/create_grid.ipynb b/nbs/create_grid.ipynb index 670900e..068deac 100644 --- a/nbs/create_grid.ipynb +++ b/nbs/create_grid.ipynb @@ -66,7 +66,11 @@ "source": [ "from pypsdm.models.input.create.participants import create_energy_management_systems\n", "\n", - "em_uuids = [\"74d45b31-c35b-403b-96ac-5210754eb4de\",\"093e03ee-2d38-4e91-9f44-c71d92c07d89\",\"22af972d-19a8-415d-8c0a-50fa1238a7d9\"]\n", + "em_uuids = [\n", + " \"74d45b31-c35b-403b-96ac-5210754eb4de\",\n", + " \"093e03ee-2d38-4e91-9f44-c71d92c07d89\",\n", + " \"22af972d-19a8-415d-8c0a-50fa1238a7d9\",\n", + "]\n", "\n", "data_dict = {\n", " \"uuid\": em_uuids,\n", diff --git a/poetry.lock b/poetry.lock index c8be62c..2fe04b3 100644 --- a/poetry.lock +++ b/poetry.lock @@ -13,13 +13,13 @@ files = [ [[package]] name = "anyio" -version = "4.8.0" +version = "4.9.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" optional = false python-versions = ">=3.9" files = [ - {file = "anyio-4.8.0-py3-none-any.whl", hash = "sha256:b5011f270ab5eb0abf13385f851315585cc37ef330dd88e27ec3d34d651fd47a"}, - {file = "anyio-4.8.0.tar.gz", hash = "sha256:1d9fe889df5212298c0c0723fa20479d1b94883a2df44bd3897aa91083316f7a"}, + {file = "anyio-4.9.0-py3-none-any.whl", hash = "sha256:9f76d541cad6e36af7beb62e978876f3b41e3e04f2c1fbf0884604c0a9c4d93c"}, + {file = "anyio-4.9.0.tar.gz", hash = "sha256:673c0c244e15788651a4ff38710fea9675823028a6f08a5eda409e0c9840a028"}, ] [package.dependencies] @@ -28,8 +28,8 @@ sniffio = ">=1.1" 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Environment builder" optional = false python-versions = ">=3.8" files = [ - {file = "virtualenv-20.29.1-py3-none-any.whl", hash = "sha256:4e4cb403c0b0da39e13b46b1b2476e505cb0046b25f242bee80f62bf990b2779"}, - {file = "virtualenv-20.29.1.tar.gz", hash = "sha256:b8b8970138d32fb606192cb97f6cd4bb644fa486be9308fb9b63f81091b5dc35"}, + {file = "virtualenv-20.29.3-py3-none-any.whl", hash = "sha256:3e3d00f5807e83b234dfb6122bf37cfadf4be216c53a49ac059d02414f819170"}, + {file = "virtualenv-20.29.3.tar.gz", hash = "sha256:95e39403fcf3940ac45bc717597dba16110b74506131845d9b687d5e73d947ac"}, ] [package.dependencies] @@ -3823,4 +3835,4 @@ dev = ["black (>=19.3b0)", "pytest (>=4.6.2)"] [metadata] lock-version = "2.0" python-versions = ">3.11,<3.13" -content-hash = "84d57bff416e329db917276024d26486f3e8bbe9a6b8df3c06e8a1e527ed3ae2" +content-hash = "21f238cd3e21a4a816d2c5f335e83ddad4ee5906ff0b696f6e2294260d6342a8" diff --git a/pyproject.toml b/pyproject.toml index 6ab8101..0e75a74 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -26,6 +26,7 @@ sqlmodel = "^0.0.22" pyhocon = "^0.3.60" psycopg2 = "^2.9.9" numba = "^0.61.0" +geoalchemy2 = "^0.17.1" [tool.poetry.group.dev.dependencies] pytest = "^8.3.4" diff --git a/pypsdm/db/weather/models.py b/pypsdm/db/weather/models.py index d3866f4..4c23ee5 100644 --- a/pypsdm/db/weather/models.py +++ b/pypsdm/db/weather/models.py @@ -2,8 +2,12 @@ from datetime import datetime from typing import Optional +from geoalchemy2 import Geography +from geoalchemy2.elements import WKBElement +from pydantic import ConfigDict from shapely import Point from shapely.wkb import loads +from sqlalchemy import Column from sqlmodel import Field, SQLModel @@ -57,11 +61,24 @@ def name_mapping(): class Coordinate(SQLModel, table=True): - id: int = Field(primary_key=True) - coordinate: str = Field() + """Represents a geographical coordinate.""" + + # Allow arbitrary types in model configuration + model_config = ConfigDict(arbitrary_types_allowed=True) + + id: int = Field(default=None, primary_key=True) + + # Use WKBElement type with the Geography column + coordinate: WKBElement = Field( + sa_column=Column( + Geography(geometry_type="POINT", srid=4326, spatial_index=False) + ) + ) def __eq__(self, other): - return self.id == other.id + if isinstance(other, Coordinate): + return self.coordinate == other.coordinate + return NotImplemented def __hash__(self): return hash(self.id) @@ -73,16 +90,26 @@ def point(self) -> Point: return loads(wkb_bytes) @property - def latitude(self) -> float: - return self.point.y + def latitude(self, session) -> Optional[float]: + """Get latitude value using PostGIS functions.""" + if self.coordinate is not None and session is not None: + from sqlalchemy import func + + return session.scalar(func.ST_Y(func.ST_GeogFromWKB(self.coordinate))) + return None @property def y(self) -> float: return self.point.y @property - def longitude(self) -> float: - return self.point.x + def longitude(self, session) -> Optional[float]: + """Get longitude value using PostGIS functions.""" + if self.coordinate is not None and session is not None: + from sqlalchemy import func + + return session.scalar(func.ST_X(func.ST_GeogFromWKB(self.coordinate))) + return None @property def x(self) -> float: From f1bcf2c14d475d382952e55b5820f5ff83ba9552 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Tue, 18 Mar 2025 11:10:48 +0100 Subject: [PATCH 02/41] poetry --- poetry.lock | 240 +++++++++------------------------------------------- 1 file changed, 38 insertions(+), 202 deletions(-) diff --git a/poetry.lock b/poetry.lock index 357ff9e..3aaaba4 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 2.1.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. 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python_version >= \"3.10\"", "uvloop (>=0.21) ; platform_python_implementation == \"CPython\" and platform_system != \"Windows\" and python_version < \"3.14\""] +test = ["anyio[trio]", "blockbuster (>=1.5.23)", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "trustme", "truststore (>=0.9.1)", "uvloop (>=0.21)"] trio = ["trio (>=0.26.1)"] [[package]] @@ -40,8 +38,6 @@ version = "0.1.4" description = "Disable App Nap on macOS >= 10.9" optional = false python-versions = ">=3.6" -groups = ["main"] -markers = "platform_system == \"Darwin\"" files = [ {file = "appnope-0.1.4-py2.py3-none-any.whl", hash = "sha256:502575ee11cd7a28c0205f379b525beefebab9d161b7c964670864014ed7213c"}, {file = "appnope-0.1.4.tar.gz", hash = "sha256:1de3860566df9caf38f01f86f65e0e13e379af54f9e4bee1e66b48f2efffd1ee"}, @@ -53,7 +49,6 @@ version = "23.1.0" description = "Argon2 for Python" optional = false python-versions = ">=3.7" -groups = ["main"] files = [ {file = "argon2_cffi-23.1.0-py3-none-any.whl", hash = "sha256:c670642b78ba29641818ab2e68bd4e6a78ba53b7eff7b4c3815ae16abf91c7ea"}, {file = "argon2_cffi-23.1.0.tar.gz", hash = "sha256:879c3e79a2729ce768ebb7d36d4609e3a78a4ca2ec3a9f12286ca057e3d0db08"}, @@ -74,7 +69,6 @@ version = "21.2.0" description = "Low-level CFFI bindings for Argon2" optional = false python-versions = ">=3.6" -groups = ["main"] files = [ {file = "argon2-cffi-bindings-21.2.0.tar.gz", hash = "sha256:bb89ceffa6c791807d1305ceb77dbfacc5aa499891d2c55661c6459651fc39e3"}, {file = "argon2_cffi_bindings-21.2.0-cp36-abi3-macosx_10_9_x86_64.whl", hash = "sha256:ccb949252cb2ab3a08c02024acb77cfb179492d5701c7cbdbfd776124d4d2367"}, @@ -112,7 +106,6 @@ version = "1.3.0" description = "Better dates & times for Python" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"}, {file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"}, @@ -132,7 +125,6 @@ version = "3.0.0" description = "Annotate AST trees with source code positions" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "asttokens-3.0.0-py3-none-any.whl", hash = "sha256:e3078351a059199dd5138cb1c706e6430c05eff2ff136af5eb4790f9d28932e2"}, {file = "asttokens-3.0.0.tar.gz", hash = "sha256:0dcd8baa8d62b0c1d118b399b2ddba3c4aff271d0d7a9e0d4c1681c79035bbc7"}, @@ -148,7 +140,6 @@ version = "2.0.5" description = "Simple LRU cache for asyncio" optional = false python-versions = ">=3.9" -groups = ["main"] files = [ {file = "async_lru-2.0.5-py3-none-any.whl", hash = "sha256:ab95404d8d2605310d345932697371a5f40def0487c03d6d0ad9138de52c9943"}, {file = "async_lru-2.0.5.tar.gz", hash = "sha256:481d52ccdd27275f42c43a928b4a50c3bfb2d67af4e78b170e3e0bb39c66e5bb"}, @@ -160,19 +151,18 @@ version = "25.3.0" description = "Classes Without Boilerplate" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "attrs-25.3.0-py3-none-any.whl", hash = "sha256:427318ce031701fea540783410126f03899a97ffc6f61596ad581ac2e40e3bc3"}, {file = "attrs-25.3.0.tar.gz", hash = "sha256:75d7cefc7fb576747b2c81b4442d4d4a1ce0900973527c011d1030fd3bf4af1b"}, ] [package.extras] -benchmark = ["cloudpickle ; 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Open, modern and actively maintained alternative to Chardet." optional = false python-versions = ">=3.7" -groups = ["main"] files = [ {file = "charset_normalizer-3.4.1-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:91b36a978b5ae0ee86c394f5a54d6ef44db1de0815eb43de826d41d21e4af3de"}, {file = "charset_normalizer-3.4.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:7461baadb4dc00fd9e0acbe254e3d7d2112e7f92ced2adc96e54ef6501c5f176"}, @@ -490,7 +472,6 @@ version = "8.1.8" description = "Composable command line interface toolkit" optional = false python-versions = ">=3.7" -groups = ["main", "dev"] files = [ {file = "click-8.1.8-py3-none-any.whl", hash = "sha256:63c132bbbed01578a06712a2d1f497bb62d9c1c0d329b7903a866228027263b2"}, {file = "click-8.1.8.tar.gz", hash = "sha256:ed53c9d8990d83c2a27deae68e4ee337473f6330c040a31d4225c9574d16096a"}, @@ -505,12 +486,10 @@ version = "0.4.6" description = "Cross-platform colored terminal text." optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" -groups = ["main", "dev"] files = [ {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"}, {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"}, ] -markers = {main = "sys_platform == \"win32\" or platform_system == \"Windows\"", dev = "platform_system == \"Windows\" or sys_platform == \"win32\""} [[package]] name = "comm" @@ -518,7 +497,6 @@ version = "0.2.2" description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc." optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "comm-0.2.2-py3-none-any.whl", hash = "sha256:e6fb86cb70ff661ee8c9c14e7d36d6de3b4066f1441be4063df9c5009f0a64d3"}, {file = "comm-0.2.2.tar.gz", hash = "sha256:3fd7a84065306e07bea1773df6eb8282de51ba82f77c72f9c85716ab11fe980e"}, @@ -536,7 +514,6 @@ version = "1.3.1" description = "Python library for calculating contours of 2D quadrilateral grids" optional = false python-versions = ">=3.10" -groups = ["main"] files = [ {file = "contourpy-1.3.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:a045f341a77b77e1c5de31e74e966537bba9f3c4099b35bf4c2e3939dd54cdab"}, {file = "contourpy-1.3.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:500360b77259914f7805af7462e41f9cb7ca92ad38e9f94d6c8641b089338124"}, @@ -610,7 +587,6 @@ version = "0.12.1" description = "Composable style cycles" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "cycler-0.12.1-py3-none-any.whl", hash = "sha256:85cef7cff222d8644161529808465972e51340599459b8ac3ccbac5a854e0d30"}, {file = "cycler-0.12.1.tar.gz", hash = "sha256:88bb128f02ba341da8ef447245a9e138fae777f6a23943da4540077d3601eb1c"}, @@ -626,7 +602,6 @@ version = "1.8.13" description = "An implementation of the Debug Adapter Protocol for Python" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "debugpy-1.8.13-cp310-cp310-macosx_14_0_x86_64.whl", hash = "sha256:06859f68e817966723ffe046b896b1bd75c665996a77313370336ee9e1de3e90"}, {file = "debugpy-1.8.13-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:cb56c2db69fb8df3168bc857d7b7d2494fed295dfdbde9a45f27b4b152f37520"}, @@ -662,7 +637,6 @@ version = "5.2.1" description = "Decorators for Humans" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "decorator-5.2.1-py3-none-any.whl", hash = "sha256:d316bb415a2d9e2d2b3abcc4084c6502fc09240e292cd76a76afc106a1c8e04a"}, {file = "decorator-5.2.1.tar.gz", hash = "sha256:65f266143752f734b0a7cc83c46f4618af75b8c5911b00ccb61d0ac9b6da0360"}, @@ -674,7 +648,6 @@ version = "0.7.1" description = "XML bomb protection for Python stdlib modules" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -groups = ["main"] files = [ {file = "defusedxml-0.7.1-py2.py3-none-any.whl", hash = "sha256:a352e7e428770286cc899e2542b6cdaedb2b4953ff269a210103ec58f6198a61"}, {file = "defusedxml-0.7.1.tar.gz", hash = "sha256:1bb3032db185915b62d7c6209c5a8792be6a32ab2fedacc84e01b52c51aa3e69"}, @@ -686,7 +659,6 @@ version = "0.3.9" description = "Distribution utilities" optional = false python-versions = "*" -groups = ["dev"] files = [ {file = "distlib-0.3.9-py2.py3-none-any.whl", hash = "sha256:47f8c22fd27c27e25a65601af709b38e4f0a45ea4fc2e710f65755fa8caaaf87"}, {file = "distlib-0.3.9.tar.gz", hash = "sha256:a60f20dea646b8a33f3e7772f74dc0b2d0772d2837ee1342a00645c81edf9403"}, @@ -698,7 +670,6 @@ version = "2.0.0" description = "An implementation of lxml.xmlfile for the standard library" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "et_xmlfile-2.0.0-py3-none-any.whl", hash = "sha256:7a91720bc756843502c3b7504c77b8fe44217c85c537d85037f0f536151b2caa"}, {file = "et_xmlfile-2.0.0.tar.gz", hash = "sha256:dab3f4764309081ce75662649be815c4c9081e88f0837825f90fd28317d4da54"}, @@ -710,14 +681,13 @@ version = "2.2.0" description = "Get the currently executing AST node of a frame, and other information" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "executing-2.2.0-py2.py3-none-any.whl", hash = "sha256:11387150cad388d62750327a53d3339fad4888b39a6fe233c3afbb54ecffd3aa"}, {file = "executing-2.2.0.tar.gz", hash = "sha256:5d108c028108fe2551d1a7b2e8b713341e2cb4fc0aa7dcf966fa4327a5226755"}, ] [package.extras] -tests = ["asttokens (>=2.1.0)", "coverage", "coverage-enable-subprocess", "ipython", "littleutils", "pytest", "rich ; python_version >= \"3.11\""] +tests = ["asttokens (>=2.1.0)", "coverage", "coverage-enable-subprocess", "ipython", "littleutils", "pytest", "rich"] [[package]] name = "fastjsonschema" @@ -725,7 +695,6 @@ version = "2.21.1" description = "Fastest Python implementation of JSON schema" optional = false python-versions = "*" -groups = ["main"] files = [ {file = "fastjsonschema-2.21.1-py3-none-any.whl", hash = "sha256:c9e5b7e908310918cf494a434eeb31384dd84a98b57a30bcb1f535015b554667"}, {file = "fastjsonschema-2.21.1.tar.gz", hash = "sha256:794d4f0a58f848961ba16af7b9c85a3e88cd360df008c59aac6fc5ae9323b5d4"}, @@ -740,7 +709,6 @@ version = "3.18.0" description = "A platform independent file lock." optional = false python-versions = ">=3.9" -groups = ["dev"] files = [ {file = "filelock-3.18.0-py3-none-any.whl", hash = "sha256:c401f4f8377c4464e6db25fff06205fd89bdd83b65eb0488ed1b160f780e21de"}, {file = "filelock-3.18.0.tar.gz", hash = "sha256:adbc88eabb99d2fec8c9c1b229b171f18afa655400173ddc653d5d01501fb9f2"}, @@ -749,7 +717,7 @@ files = [ [package.extras] docs = ["furo (>=2024.8.6)", "sphinx (>=8.1.3)", "sphinx-autodoc-typehints (>=3)"] testing = ["covdefaults (>=2.3)", "coverage (>=7.6.10)", "diff-cover (>=9.2.1)", "pytest (>=8.3.4)", "pytest-asyncio (>=0.25.2)", "pytest-cov (>=6)", "pytest-mock (>=3.14)", "pytest-timeout (>=2.3.1)", "virtualenv (>=20.28.1)"] -typing = ["typing-extensions (>=4.12.2) ; python_version < \"3.11\""] +typing = ["typing-extensions (>=4.12.2)"] [[package]] name = "flake8" @@ -757,7 +725,6 @@ version = "7.1.2" description = "the modular source code checker: pep8 pyflakes and co" optional = false python-versions = ">=3.8.1" -groups = ["dev"] files = [ {file = "flake8-7.1.2-py2.py3-none-any.whl", hash = "sha256:1cbc62e65536f65e6d754dfe6f1bada7f5cf392d6f5db3c2b85892466c3e7c1a"}, {file = "flake8-7.1.2.tar.gz", hash = "sha256:c586ffd0b41540951ae41af572e6790dbd49fc12b3aa2541685d253d9bd504bd"}, @@ -774,7 +741,6 @@ version = "0.3.6" description = "flake8 plugin to call black as a code style validator" optional = false python-versions = ">=3.7" -groups = ["dev"] files = [ {file = "flake8-black-0.3.6.tar.gz", hash = "sha256:0dfbca3274777792a5bcb2af887a4cad72c72d0e86c94e08e3a3de151bb41c34"}, {file = "flake8_black-0.3.6-py3-none-any.whl", hash = "sha256:fe8ea2eca98d8a504f22040d9117347f6b367458366952862ac3586e7d4eeaca"}, @@ -793,7 +759,6 @@ version = "6.1.2" description = "flake8 plugin that integrates isort" optional = false python-versions = ">=3.9" -groups = ["dev"] files = [ {file = "flake8_isort-6.1.2-py3-none-any.whl", hash = "sha256:549197dedf0273502fb74f04c080beed9e62a7eb70244610413d27052e78bd3b"}, {file = "flake8_isort-6.1.2.tar.gz", hash = "sha256:9d0452acdf0e1cd6f2d6848e3605e66b54d920e73471fb4744eef0f93df62d5d"}, @@ -812,7 +777,6 @@ version = "4.56.0" description = "Tools to manipulate font files" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "fonttools-4.56.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:331954d002dbf5e704c7f3756028e21db07097c19722569983ba4d74df014000"}, {file = "fonttools-4.56.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:8d1613abd5af2f93c05867b3a3759a56e8bf97eb79b1da76b2bc10892f96ff16"}, @@ -867,18 +831,18 @@ files = [ ] [package.extras] -all = ["brotli (>=1.0.1) ; platform_python_implementation == \"CPython\"", "brotlicffi (>=0.8.0) ; platform_python_implementation != \"CPython\"", "fs (>=2.2.0,<3)", "lxml (>=4.0)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres ; platform_python_implementation == \"PyPy\"", "pycairo", "scipy ; platform_python_implementation != \"PyPy\"", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=15.1.0) ; python_version <= \"3.12\"", "xattr ; sys_platform == \"darwin\"", "zopfli (>=0.1.4)"] +all = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "fs (>=2.2.0,<3)", "lxml (>=4.0)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres", "pycairo", "scipy", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=15.1.0)", "xattr", "zopfli (>=0.1.4)"] graphite = ["lz4 (>=1.7.4.2)"] -interpolatable = ["munkres ; platform_python_implementation == \"PyPy\"", "pycairo", "scipy ; platform_python_implementation != \"PyPy\""] +interpolatable = ["munkres", "pycairo", "scipy"] lxml = ["lxml (>=4.0)"] pathops = ["skia-pathops (>=0.5.0)"] plot = ["matplotlib"] repacker = ["uharfbuzz (>=0.23.0)"] symfont = ["sympy"] -type1 = ["xattr ; sys_platform == \"darwin\""] +type1 = ["xattr"] ufo = ["fs (>=2.2.0,<3)"] -unicode = ["unicodedata2 (>=15.1.0) ; python_version <= \"3.12\""] -woff = ["brotli (>=1.0.1) ; platform_python_implementation == \"CPython\"", "brotlicffi (>=0.8.0) ; platform_python_implementation != \"CPython\"", "zopfli (>=0.1.4)"] +unicode = ["unicodedata2 (>=15.1.0)"] +woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"] [[package]] name = "fqdn" @@ -886,7 +850,6 @@ version = "1.5.1" description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers" optional = false python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4" -groups = ["main"] files = [ {file = "fqdn-1.5.1-py3-none-any.whl", hash = "sha256:3a179af3761e4df6eb2e026ff9e1a3033d3587bf980a0b1b2e1e5d08d7358014"}, {file = "fqdn-1.5.1.tar.gz", hash = "sha256:105ed3677e767fb5ca086a0c1f4bb66ebc3c100be518f0e0d755d9eae164d89f"}, @@ -916,8 +879,6 @@ version = "3.1.1" description = "Lightweight in-process concurrent programming" optional = false python-versions = ">=3.7" -groups = ["main"] -markers = "platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\"" files = [ {file = "greenlet-3.1.1-cp310-cp310-macosx_11_0_universal2.whl", hash = "sha256:0bbae94a29c9e5c7e4a2b7f0aae5c17e8e90acbfd3bf6270eeba60c39fce3563"}, {file = "greenlet-3.1.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:0fde093fb93f35ca72a556cf72c92ea3ebfda3d79fc35bb19fbe685853869a83"}, @@ -1004,7 +965,6 @@ version = "0.14.0" description = "A pure-Python, bring-your-own-I/O implementation of HTTP/1.1" optional = false python-versions = ">=3.7" -groups = ["main"] files = [ {file = "h11-0.14.0-py3-none-any.whl", hash = "sha256:e3fe4ac4b851c468cc8363d500db52c2ead036020723024a109d37346efaa761"}, {file = "h11-0.14.0.tar.gz", hash = "sha256:8f19fbbe99e72420ff35c00b27a34cb9937e902a8b810e2c88300c6f0a3b699d"}, @@ -1016,7 +976,6 @@ version = "1.0.7" description = "A minimal low-level HTTP client." optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "httpcore-1.0.7-py3-none-any.whl", hash = "sha256:a3fff8f43dc260d5bd363d9f9cf1830fa3a458b332856f34282de498ed420edd"}, {file = "httpcore-1.0.7.tar.gz", hash = "sha256:8551cb62a169ec7162ac7be8d4817d561f60e08eaa485234898414bb5a8a0b4c"}, @@ -1038,7 +997,6 @@ version = "0.28.1" description = "The next generation HTTP client." optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "httpx-0.28.1-py3-none-any.whl", hash = "sha256:d909fcccc110f8c7faf814ca82a9a4d816bc5a6dbfea25d6591d6985b8ba59ad"}, {file = "httpx-0.28.1.tar.gz", hash = "sha256:75e98c5f16b0f35b567856f597f06ff2270a374470a5c2392242528e3e3e42fc"}, @@ -1051,7 +1009,7 @@ httpcore = "==1.*" idna = "*" [package.extras] -brotli = ["brotli ; platform_python_implementation == \"CPython\"", "brotlicffi ; platform_python_implementation != \"CPython\""] +brotli = ["brotli", "brotlicffi"] cli = ["click (==8.*)", "pygments (==2.*)", "rich (>=10,<14)"] http2 = ["h2 (>=3,<5)"] socks = ["socksio (==1.*)"] @@ -1063,7 +1021,6 @@ version = "2.6.9" description = "File identification library for Python" optional = false python-versions = ">=3.9" -groups = ["dev"] files = [ {file = "identify-2.6.9-py2.py3-none-any.whl", hash = "sha256:c98b4322da415a8e5a70ff6e51fbc2d2932c015532d77e9f8537b4ba7813b150"}, {file = "identify-2.6.9.tar.gz", hash = "sha256:d40dfe3142a1421d8518e3d3985ef5ac42890683e32306ad614a29490abeb6bf"}, @@ -1078,7 +1035,6 @@ version = "3.10" description = "Internationalized Domain Names in Applications (IDNA)" optional = false python-versions = ">=3.6" -groups = ["main"] files = [ {file = "idna-3.10-py3-none-any.whl", hash = "sha256:946d195a0d259cbba61165e88e65941f16e9b36ea6ddb97f00452bae8b1287d3"}, {file = "idna-3.10.tar.gz", hash = "sha256:12f65c9b470abda6dc35cf8e63cc574b1c52b11df2c86030af0ac09b01b13ea9"}, @@ -1093,7 +1049,6 @@ version = "2.0.0" description = "brain-dead simple config-ini parsing" optional = false python-versions = ">=3.7" -groups = ["dev"] files = [ {file = "iniconfig-2.0.0-py3-none-any.whl", hash = "sha256:b6a85871a79d2e3b22d2d1b94ac2824226a63c6b741c88f7ae975f18b6778374"}, {file = "iniconfig-2.0.0.tar.gz", hash = "sha256:2d91e135bf72d31a410b17c16da610a82cb55f6b0477d1a902134b24a455b8b3"}, @@ -1105,7 +1060,6 @@ version = "6.29.5" description = "IPython Kernel for Jupyter" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "ipykernel-6.29.5-py3-none-any.whl", hash = "sha256:afdb66ba5aa354b09b91379bac28ae4afebbb30e8b39510c9690afb7a10421b5"}, {file = "ipykernel-6.29.5.tar.gz", hash = "sha256:f093a22c4a40f8828f8e330a9c297cb93dcab13bd9678ded6de8e5cf81c56215"}, @@ -1139,7 +1093,6 @@ version = "9.0.2" description = "IPython: Productive Interactive Computing" optional = false python-versions = ">=3.11" -groups = ["main"] files = [ {file = "ipython-9.0.2-py3-none-any.whl", hash = "sha256:143ef3ea6fb1e1bffb4c74b114051de653ffb7737a3f7ab1670e657ca6ae8c44"}, {file = "ipython-9.0.2.tar.gz", hash = "sha256:ec7b479e3e5656bf4f58c652c120494df1820f4f28f522fb7ca09e213c2aab52"}, @@ -1161,8 +1114,7 @@ typing_extensions = {version = ">=4.6", markers = "python_version < \"3.12\""} [package.extras] all = ["ipython[doc,matplotlib,test,test-extra]"] black = ["black"] -doc = ["docrepr", "exceptiongroup", "intersphinx_registry", "ipykernel", "ipython[test]", "matplotlib", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "sphinxcontrib-jquery", "tomli ; python_version < \"3.11\"", "typing_extensions"] -kernel = ["ipykernel"] +doc = ["docrepr", "exceptiongroup", "intersphinx_registry", "ipykernel", "ipython[test]", "matplotlib", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "sphinx_toml (==0.0.4)", "typing_extensions"] matplotlib = ["matplotlib"] test = ["packaging", "pytest", "pytest-asyncio (<0.22)", "testpath"] test-extra = ["curio", "ipython[test]", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.23)", "pandas", "trio"] @@ -1187,7 +1139,6 @@ version = "8.1.5" description = "Jupyter interactive widgets" optional = false python-versions = ">=3.7" -groups = ["main"] files = [ {file = "ipywidgets-8.1.5-py3-none-any.whl", hash = "sha256:3290f526f87ae6e77655555baba4f36681c555b8bdbbff430b70e52c34c86245"}, {file = "ipywidgets-8.1.5.tar.gz", hash = "sha256:870e43b1a35656a80c18c9503bbf2d16802db1cb487eec6fab27d683381dde17"}, @@ -1209,7 +1160,6 @@ version = "20.11.0" description = "Operations with ISO 8601 durations" optional = false python-versions = ">=3.7" -groups = ["main"] files = [ {file = "isoduration-20.11.0-py3-none-any.whl", hash = "sha256:b2904c2a4228c3d44f409c8ae8e2370eb21a26f7ac2ec5446df141dde3452042"}, {file = "isoduration-20.11.0.tar.gz", hash = "sha256:ac2f9015137935279eac671f94f89eb00584f940f5dc49462a0c4ee692ba1bd9"}, @@ -1224,7 +1174,6 @@ version = "6.0.1" description = "A Python utility / library to sort Python imports." optional = false python-versions = ">=3.9.0" -groups = ["dev"] files = [ {file = "isort-6.0.1-py3-none-any.whl", hash = "sha256:2dc5d7f65c9678d94c88dfc29161a320eec67328bc97aad576874cb4be1e9615"}, {file = "isort-6.0.1.tar.gz", hash = "sha256:1cb5df28dfbc742e490c5e41bad6da41b805b0a8be7bc93cd0fb2a8a890ac450"}, @@ -1240,7 +1189,6 @@ version = "0.19.2" description = "An autocompletion tool for Python that can be used for text editors." optional = false python-versions = ">=3.6" -groups = ["main"] files = [ {file = "jedi-0.19.2-py2.py3-none-any.whl", hash = "sha256:a8ef22bde8490f57fe5c7681a3c83cb58874daf72b4784de3cce5b6ef6edb5b9"}, {file = "jedi-0.19.2.tar.gz", hash = "sha256:4770dc3de41bde3966b02eb84fbcf557fb33cce26ad23da12c742fb50ecb11f0"}, @@ -1260,7 +1208,6 @@ version = "3.1.6" description = "A very fast and expressive template engine." optional = false python-versions = ">=3.7" -groups = ["main"] files = [ {file = "jinja2-3.1.6-py3-none-any.whl", hash = "sha256:85ece4451f492d0c13c5dd7c13a64681a86afae63a5f347908daf103ce6d2f67"}, {file = "jinja2-3.1.6.tar.gz", hash = "sha256:0137fb05990d35f1275a587e9aee6d56da821fc83491a0fb838183be43f66d6d"}, @@ -1278,7 +1225,6 @@ version = "0.10.0" description = "A Python implementation of the JSON5 data format." optional = false python-versions = ">=3.8.0" -groups = ["main"] files = [ {file = "json5-0.10.0-py3-none-any.whl", hash = "sha256:19b23410220a7271e8377f81ba8aacba2fdd56947fbb137ee5977cbe1f5e8dfa"}, {file = "json5-0.10.0.tar.gz", hash = "sha256:e66941c8f0a02026943c52c2eb34ebeb2a6f819a0be05920a6f5243cd30fd559"}, @@ -1293,7 +1239,6 @@ version = "3.0.0" description = "Identify specific nodes in a JSON document (RFC 6901)" optional = false python-versions = ">=3.7" -groups = ["main"] files = [ {file = "jsonpointer-3.0.0-py2.py3-none-any.whl", hash = "sha256:13e088adc14fca8b6aa8177c044e12701e6ad4b28ff10e65f2267a90109c9942"}, {file = "jsonpointer-3.0.0.tar.gz", hash = "sha256:2b2d729f2091522d61c3b31f82e11870f60b68f43fbc705cb76bf4b832af59ef"}, @@ -1305,7 +1250,6 @@ version = "4.23.0" description = "An implementation of JSON Schema validation for Python" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "jsonschema-4.23.0-py3-none-any.whl", hash = "sha256:fbadb6f8b144a8f8cf9f0b89ba94501d143e50411a1278633f56a7acf7fd5566"}, {file = "jsonschema-4.23.0.tar.gz", hash = "sha256:d71497fef26351a33265337fa77ffeb82423f3ea21283cd9467bb03999266bc4"}, @@ -1335,7 +1279,6 @@ version = "2024.10.1" description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry" optional = false python-versions = ">=3.9" -groups = ["main"] files = [ {file = "jsonschema_specifications-2024.10.1-py3-none-any.whl", hash = "sha256:a09a0680616357d9a0ecf05c12ad234479f549239d0f5b55f3deea67475da9bf"}, {file = "jsonschema_specifications-2024.10.1.tar.gz", hash = "sha256:0f38b83639958ce1152d02a7f062902c41c8fd20d558b0c34344292d417ae272"}, @@ -1350,7 +1293,6 @@ version = "1.1.1" description = "Jupyter metapackage. Install all the Jupyter components in one go." optional = false python-versions = "*" -groups = ["main"] files = [ {file = "jupyter-1.1.1-py2.py3-none-any.whl", hash = "sha256:7a59533c22af65439b24bbe60373a4e95af8f16ac65a6c00820ad378e3f7cc83"}, {file = "jupyter-1.1.1.tar.gz", hash = "sha256:d55467bceabdea49d7e3624af7e33d59c37fff53ed3a350e1ac957bed731de7a"}, @@ -1370,7 +1312,6 @@ version = "8.6.3" description = "Jupyter protocol implementation and client libraries" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "jupyter_client-8.6.3-py3-none-any.whl", hash = "sha256:e8a19cc986cc45905ac3362915f410f3af85424b4c0905e94fa5f2cb08e8f23f"}, {file = "jupyter_client-8.6.3.tar.gz", hash = "sha256:35b3a0947c4a6e9d589eb97d7d4cd5e90f910ee73101611f01283732bd6d9419"}, @@ -1385,7 +1326,7 @@ traitlets = ">=5.3" [package.extras] docs = ["ipykernel", "myst-parser", "pydata-sphinx-theme", "sphinx (>=4)", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-spelling"] -test = ["coverage", "ipykernel (>=6.14)", "mypy", "paramiko ; sys_platform == \"win32\"", "pre-commit", "pytest (<8.2.0)", "pytest-cov", "pytest-jupyter[client] (>=0.4.1)", "pytest-timeout"] +test = ["coverage", "ipykernel (>=6.14)", "mypy", "paramiko", "pre-commit", "pytest (<8.2.0)", "pytest-cov", "pytest-jupyter[client] (>=0.4.1)", "pytest-timeout"] [[package]] name = "jupyter-console" @@ -1393,7 +1334,6 @@ version = "6.6.3" description = "Jupyter terminal console" optional = false python-versions = ">=3.7" -groups = ["main"] files = [ {file = "jupyter_console-6.6.3-py3-none-any.whl", hash = "sha256:309d33409fcc92ffdad25f0bcdf9a4a9daa61b6f341177570fdac03de5352485"}, {file = "jupyter_console-6.6.3.tar.gz", hash = "sha256:566a4bf31c87adbfadf22cdf846e3069b59a71ed5da71d6ba4d8aaad14a53539"}, @@ -1418,7 +1358,6 @@ version = "5.7.2" description = "Jupyter core package. A base package on which Jupyter projects rely." optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "jupyter_core-5.7.2-py3-none-any.whl", hash = "sha256:4f7315d2f6b4bcf2e3e7cb6e46772eba760ae459cd1f59d29eb57b0a01bd7409"}, {file = "jupyter_core-5.7.2.tar.gz", hash = "sha256:aa5f8d32bbf6b431ac830496da7392035d6f61b4f54872f15c4bd2a9c3f536d9"}, @@ -1439,7 +1378,6 @@ version = "0.12.0" description = "Jupyter Event System library" optional = false python-versions = ">=3.9" -groups = ["main"] files = [ {file = "jupyter_events-0.12.0-py3-none-any.whl", hash = "sha256:6464b2fa5ad10451c3d35fabc75eab39556ae1e2853ad0c0cc31b656731a97fb"}, {file = "jupyter_events-0.12.0.tar.gz", hash = "sha256:fc3fce98865f6784c9cd0a56a20644fc6098f21c8c33834a8d9fe383c17e554b"}, @@ -1466,7 +1404,6 @@ version = "2.2.5" description = "Multi-Language Server WebSocket proxy for Jupyter Notebook/Lab server" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "jupyter-lsp-2.2.5.tar.gz", hash = "sha256:793147a05ad446f809fd53ef1cd19a9f5256fd0a2d6b7ce943a982cb4f545001"}, {file = "jupyter_lsp-2.2.5-py3-none-any.whl", hash = "sha256:45fbddbd505f3fbfb0b6cb2f1bc5e15e83ab7c79cd6e89416b248cb3c00c11da"}, @@ -1481,7 +1418,6 @@ version = "2.15.0" description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications." optional = false python-versions = ">=3.9" -groups = ["main"] files = [ {file = "jupyter_server-2.15.0-py3-none-any.whl", hash = "sha256:872d989becf83517012ee669f09604aa4a28097c0bd90b2f424310156c2cdae3"}, {file = "jupyter_server-2.15.0.tar.gz", hash = "sha256:9d446b8697b4f7337a1b7cdcac40778babdd93ba614b6d68ab1c0c918f1c4084"}, @@ -1518,7 +1454,6 @@ version = "0.5.3" description = "A Jupyter Server Extension Providing Terminals." optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "jupyter_server_terminals-0.5.3-py3-none-any.whl", hash = "sha256:41ee0d7dc0ebf2809c668e0fc726dfaf258fcd3e769568996ca731b6194ae9aa"}, {file = "jupyter_server_terminals-0.5.3.tar.gz", hash = "sha256:5ae0295167220e9ace0edcfdb212afd2b01ee8d179fe6f23c899590e9b8a5269"}, @@ -1538,7 +1473,6 @@ version = "4.3.6" description = "JupyterLab computational environment" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "jupyterlab-4.3.6-py3-none-any.whl", hash = "sha256:fc9eb0455562a56a9bd6d2977cf090842f321fa1a298fcee9bf8c19de353d5fd"}, {file = "jupyterlab-4.3.6.tar.gz", hash = "sha256:2900ffdbfca9ed37c4ad7fdda3eb76582fd945d46962af3ac64741ae2d6b2ff4"}, @@ -1572,7 +1506,6 @@ version = "0.3.0" description = "Pygments theme using JupyterLab CSS variables" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "jupyterlab_pygments-0.3.0-py3-none-any.whl", hash = "sha256:841a89020971da1d8693f1a99997aefc5dc424bb1b251fd6322462a1b8842780"}, {file = "jupyterlab_pygments-0.3.0.tar.gz", hash = "sha256:721aca4d9029252b11cfa9d185e5b5af4d54772bb8072f9b7036f4170054d35d"}, @@ -1584,7 +1517,6 @@ version = "2.27.3" description = "A set of server components for JupyterLab and JupyterLab like applications." optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "jupyterlab_server-2.27.3-py3-none-any.whl", hash = "sha256:e697488f66c3db49df675158a77b3b017520d772c6e1548c7d9bcc5df7944ee4"}, {file = "jupyterlab_server-2.27.3.tar.gz", hash = "sha256:eb36caca59e74471988f0ae25c77945610b887f777255aa21f8065def9e51ed4"}, @@ -1610,7 +1542,6 @@ version = "3.0.13" description = "Jupyter interactive widgets for JupyterLab" optional = false python-versions = ">=3.7" -groups = ["main"] files = [ {file = "jupyterlab_widgets-3.0.13-py3-none-any.whl", hash = "sha256:e3cda2c233ce144192f1e29914ad522b2f4c40e77214b0cc97377ca3d323db54"}, {file = "jupyterlab_widgets-3.0.13.tar.gz", hash = "sha256:a2966d385328c1942b683a8cd96b89b8dd82c8b8f81dda902bb2bc06d46f5bed"}, @@ -1622,7 +1553,6 @@ version = "1.4.8" description = "A fast implementation of the Cassowary constraint solver" optional = false python-versions = ">=3.10" -groups = ["main"] files = [ {file = "kiwisolver-1.4.8-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:88c6f252f6816a73b1f8c904f7bbe02fd67c09a69f7cb8a0eecdbf5ce78e63db"}, {file = "kiwisolver-1.4.8-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:c72941acb7b67138f35b879bbe85be0f6c6a70cab78fe3ef6db9c024d9223e5b"}, @@ -1712,7 +1642,6 @@ version = "0.44.0" description = "lightweight wrapper around basic LLVM functionality" optional = false python-versions = ">=3.10" -groups = ["main"] files = [ {file = "llvmlite-0.44.0-cp310-cp310-macosx_10_14_x86_64.whl", hash = "sha256:9fbadbfba8422123bab5535b293da1cf72f9f478a65645ecd73e781f962ca614"}, {file = "llvmlite-0.44.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:cccf8eb28f24840f2689fb1a45f9c0f7e582dd24e088dcf96e424834af11f791"}, @@ -1743,7 +1672,6 @@ version = "0.7.3" description = "Python logging made (stupidly) simple" optional = false python-versions = "<4.0,>=3.5" -groups = ["main"] files = [ {file = "loguru-0.7.3-py3-none-any.whl", hash = "sha256:31a33c10c8e1e10422bfd431aeb5d351c7cf7fa671e3c4df004162264b28220c"}, {file = "loguru-0.7.3.tar.gz", hash = "sha256:19480589e77d47b8d85b2c827ad95d49bf31b0dcde16593892eb51dd18706eb6"}, @@ -1754,7 +1682,7 @@ colorama = {version = ">=0.3.4", markers = "sys_platform == \"win32\""} win32-setctime = {version = ">=1.0.0", markers = "sys_platform == \"win32\""} [package.extras] -dev = ["Sphinx (==8.1.3) ; python_version >= \"3.11\"", "build (==1.2.2) ; python_version >= \"3.11\"", "colorama (==0.4.5) ; python_version < \"3.8\"", "colorama (==0.4.6) ; python_version >= \"3.8\"", "exceptiongroup (==1.1.3) ; python_version >= \"3.7\" and python_version < \"3.11\"", "freezegun (==1.1.0) ; python_version < \"3.8\"", "freezegun (==1.5.0) ; python_version >= \"3.8\"", "mypy (==v0.910) ; python_version < \"3.6\"", "mypy (==v0.971) ; python_version == \"3.6\"", "mypy (==v1.13.0) ; python_version >= \"3.8\"", "mypy (==v1.4.1) ; python_version == \"3.7\"", "myst-parser (==4.0.0) ; python_version >= \"3.11\"", "pre-commit (==4.0.1) ; python_version >= \"3.9\"", "pytest (==6.1.2) ; python_version < \"3.8\"", "pytest (==8.3.2) ; python_version >= \"3.8\"", "pytest-cov (==2.12.1) ; python_version < \"3.8\"", "pytest-cov (==5.0.0) ; python_version == \"3.8\"", "pytest-cov (==6.0.0) ; python_version >= \"3.9\"", "pytest-mypy-plugins (==1.9.3) ; python_version >= \"3.6\" and python_version < \"3.8\"", "pytest-mypy-plugins (==3.1.0) ; python_version >= \"3.8\"", "sphinx-rtd-theme (==3.0.2) ; python_version >= \"3.11\"", "tox (==3.27.1) ; python_version < \"3.8\"", "tox (==4.23.2) ; python_version >= \"3.8\"", "twine (==6.0.1) ; python_version >= \"3.11\""] +dev = ["Sphinx (==8.1.3)", "build (==1.2.2)", "colorama (==0.4.5)", "colorama (==0.4.6)", "exceptiongroup (==1.1.3)", "freezegun (==1.1.0)", "freezegun (==1.5.0)", "mypy 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python-versions = ">=3.10" -groups = ["main"] files = [ {file = "matplotlib-3.10.1-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:ff2ae14910be903f4a24afdbb6d7d3a6c44da210fc7d42790b87aeac92238a16"}, {file = "matplotlib-3.10.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:0721a3fd3d5756ed593220a8b86808a36c5031fce489adb5b31ee6dbb47dd5b2"}, @@ -1891,7 +1817,6 @@ version = "0.1.7" description = "Inline Matplotlib backend for Jupyter" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "matplotlib_inline-0.1.7-py3-none-any.whl", hash = "sha256:df192d39a4ff8f21b1895d72e6a13f5fcc5099f00fa84384e0ea28c2cc0653ca"}, {file = "matplotlib_inline-0.1.7.tar.gz", hash = "sha256:8423b23ec666be3d16e16b60bdd8ac4e86e840ebd1dd11a30b9f117f2fa0ab90"}, @@ -1906,7 +1831,6 @@ version = "0.7.0" description = "McCabe checker, plugin for flake8" optional = false python-versions = ">=3.6" -groups = ["dev"] files = [ {file = "mccabe-0.7.0-py2.py3-none-any.whl", hash = "sha256:6c2d30ab6be0e4a46919781807b4f0d834ebdd6c6e3dca0bda5a15f863427b6e"}, {file = "mccabe-0.7.0.tar.gz", hash = "sha256:348e0240c33b60bbdf4e523192ef919f28cb2c3d7d5c7794f74009290f236325"}, @@ -1918,7 +1842,6 @@ version = "3.1.2" description = "A sane and fast Markdown parser with useful plugins and renderers" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "mistune-3.1.2-py3-none-any.whl", hash = "sha256:4b47731332315cdca99e0ded46fc0004001c1299ff773dfb48fbe1fd226de319"}, {file = "mistune-3.1.2.tar.gz", hash = "sha256:733bf018ba007e8b5f2d3a9eb624034f6ee26c4ea769a98ec533ee111d504dff"}, @@ -1930,7 +1853,6 @@ version = "1.0.0" description = "Type system extensions for programs checked with the mypy type checker." optional = false python-versions = ">=3.5" -groups = ["main", "dev"] files = [ {file = "mypy_extensions-1.0.0-py3-none-any.whl", hash = "sha256:4392f6c0eb8a5668a69e23d168ffa70f0be9ccfd32b5cc2d26a34ae5b844552d"}, {file = "mypy_extensions-1.0.0.tar.gz", hash = "sha256:75dbf8955dc00442a438fc4d0666508a9a97b6bd41aa2f0ffe9d2f2725af0782"}, @@ -1942,7 +1864,6 @@ version = "0.10.2" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." optional = false python-versions = ">=3.9.0" -groups = ["main"] files = [ {file = "nbclient-0.10.2-py3-none-any.whl", hash = "sha256:4ffee11e788b4a27fabeb7955547e4318a5298f34342a4bfd01f2e1faaeadc3d"}, {file = "nbclient-0.10.2.tar.gz", hash = "sha256:90b7fc6b810630db87a6d0c2250b1f0ab4cf4d3c27a299b0cde78a4ed3fd9193"}, @@ -1965,7 +1886,6 @@ version = "7.16.6" description = "Converting Jupyter Notebooks (.ipynb files) to other formats. Output formats include asciidoc, html, latex, markdown, pdf, py, rst, script. nbconvert can be used both as a Python library (`import nbconvert`) or as a command line tool (invoked as `jupyter nbconvert ...`)." optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "nbconvert-7.16.6-py3-none-any.whl", hash = "sha256:1375a7b67e0c2883678c48e506dc320febb57685e5ee67faa51b18a90f3a712b"}, {file = "nbconvert-7.16.6.tar.gz", hash = "sha256:576a7e37c6480da7b8465eefa66c17844243816ce1ccc372633c6b71c3c0f582"}, @@ -2002,7 +1922,6 @@ version = "5.10.4" description = "The Jupyter Notebook format" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "nbformat-5.10.4-py3-none-any.whl", hash = "sha256:3b48d6c8fbca4b299bf3982ea7db1af21580e4fec269ad087b9e81588891200b"}, {file = "nbformat-5.10.4.tar.gz", hash = "sha256:322168b14f937a5d11362988ecac2a4952d3d8e3a2cbeb2319584631226d5b3a"}, @@ -2024,7 +1943,6 @@ version = "1.6.0" description = "Patch asyncio to allow nested event loops" optional = false python-versions = ">=3.5" -groups = ["main"] files = [ {file = "nest_asyncio-1.6.0-py3-none-any.whl", hash = "sha256:87af6efd6b5e897c81050477ef65c62e2b2f35d51703cae01aff2905b1852e1c"}, {file = "nest_asyncio-1.6.0.tar.gz", hash = "sha256:6f172d5449aca15afd6c646851f4e31e02c598d553a667e38cafa997cfec55fe"}, @@ -2036,7 +1954,6 @@ version = "3.4.2" description = "Python package for creating and manipulating graphs and networks" optional = false python-versions = ">=3.10" -groups = ["main"] files = [ {file = "networkx-3.4.2-py3-none-any.whl", hash = "sha256:df5d4365b724cf81b8c6a7312509d0c22386097011ad1abe274afd5e9d3bbc5f"}, {file = "networkx-3.4.2.tar.gz", hash = "sha256:307c3669428c5362aab27c8a1260aa8f47c4e91d3891f48be0141738d8d053e1"}, @@ -2056,7 +1973,6 @@ version = "1.9.1" description = "Node.js virtual environment builder" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" -groups = ["dev"] files = [ {file = "nodeenv-1.9.1-py2.py3-none-any.whl", hash = "sha256:ba11c9782d29c27c70ffbdda2d7415098754709be8a7056d79a737cd901155c9"}, {file = "nodeenv-1.9.1.tar.gz", hash = "sha256:6ec12890a2dab7946721edbfbcd91f3319c6ccc9aec47be7c7e6b7011ee6645f"}, @@ -2068,7 +1984,6 @@ version = "7.3.3" description = "Jupyter Notebook - A web-based notebook environment for interactive computing" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "notebook-7.3.3-py3-none-any.whl", hash = "sha256:b193df0878956562d5171c8e25c9252b8e86c9fcc16163b8ee3fe6c5e3f422f7"}, {file = "notebook-7.3.3.tar.gz", hash = "sha256:707a313fb882d35f921989eb3d204de942ed5132a44e4aa1fe0e8f24bb9dc25d"}, @@ -2084,7 +1999,7 @@ tornado = ">=6.2.0" [package.extras] dev = ["hatch", "pre-commit"] docs = ["myst-parser", "nbsphinx", "pydata-sphinx-theme", "sphinx (>=1.3.6)", "sphinxcontrib-github-alt", "sphinxcontrib-spelling"] -test = ["importlib-resources (>=5.0) ; python_version < \"3.10\"", "ipykernel", "jupyter-server[test] (>=2.4.0,<3)", "jupyterlab-server[test] (>=2.27.1,<3)", "nbval", "pytest (>=7.0)", "pytest-console-scripts", "pytest-timeout", "pytest-tornasync", "requests"] +test = ["importlib-resources (>=5.0)", "ipykernel", "jupyter-server[test] (>=2.4.0,<3)", "jupyterlab-server[test] (>=2.27.1,<3)", "nbval", "pytest (>=7.0)", "pytest-console-scripts", "pytest-timeout", "pytest-tornasync", "requests"] [[package]] name = "notebook-shim" @@ -2092,7 +2007,6 @@ version = "0.2.4" description = "A shim layer for notebook traits and config" optional = false python-versions = ">=3.7" -groups = ["main"] files = [ {file = "notebook_shim-0.2.4-py3-none-any.whl", hash = "sha256:411a5be4e9dc882a074ccbcae671eda64cceb068767e9a3419096986560e1cef"}, {file = "notebook_shim-0.2.4.tar.gz", hash = "sha256:b4b2cfa1b65d98307ca24361f5b30fe785b53c3fd07b7a47e89acb5e6ac638cb"}, @@ -2110,7 +2024,6 @@ version = "0.61.0" description = "compiling Python code using LLVM" optional = false python-versions = ">=3.10" -groups = ["main"] files = [ {file = "numba-0.61.0-cp310-cp310-macosx_10_14_x86_64.whl", hash = "sha256:9cab9783a700fa428b1a54d65295122bc03b3de1d01fb819a6b9dbbddfdb8c43"}, {file = "numba-0.61.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:46c5ae094fb3706f5adf9021bfb7fc11e44818d61afee695cdee4eadfed45e98"}, @@ -2145,7 +2058,6 @@ version = "1.26.4" description = "Fundamental package for array computing in Python" optional = false python-versions = ">=3.9" -groups = ["main"] files = [ {file = "numpy-1.26.4-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:9ff0f4f29c51e2803569d7a51c2304de5554655a60c5d776e35b4a41413830d0"}, {file = "numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:2e4ee3380d6de9c9ec04745830fd9e2eccb3e6cf790d39d7b98ffd19b0dd754a"}, @@ -2191,7 +2103,6 @@ version = "3.1.5" description = "A Python library to read/write Excel 2010 xlsx/xlsm files" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "openpyxl-3.1.5-py2.py3-none-any.whl", hash = "sha256:5282c12b107bffeef825f4617dc029afaf41d0ea60823bbb665ef3079dc79de2"}, {file = "openpyxl-3.1.5.tar.gz", hash = "sha256:cf0e3cf56142039133628b5acffe8ef0c12bc902d2aadd3e0fe5878dc08d1050"}, @@ -2206,7 +2117,6 @@ version = "7.7.0" description = "A decorator to automatically detect mismatch when overriding a method." optional = false python-versions = ">=3.6" -groups = ["main"] files = [ {file = "overrides-7.7.0-py3-none-any.whl", hash = "sha256:c7ed9d062f78b8e4c1a7b70bd8796b35ead4d9f510227ef9c5dc7626c60d7e49"}, {file = "overrides-7.7.0.tar.gz", hash = "sha256:55158fa3d93b98cc75299b1e67078ad9003ca27945c76162c1c0766d6f91820a"}, @@ -2218,7 +2128,6 @@ version = "24.2" description = "Core utilities for Python packages" optional = false python-versions = ">=3.8" -groups = ["main", "dev"] files = [ {file = "packaging-24.2-py3-none-any.whl", hash = "sha256:09abb1bccd265c01f4a3aa3f7a7db064b36514d2cba19a2f694fe6150451a759"}, {file = "packaging-24.2.tar.gz", hash = "sha256:c228a6dc5e932d346bc5739379109d49e8853dd8223571c7c5b55260edc0b97f"}, @@ -2230,7 +2139,6 @@ version = "2.2.3" description = "Powerful data structures for data analysis, time series, and statistics" optional = false python-versions = ">=3.9" -groups = ["main"] files = [ {file = "pandas-2.2.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:1948ddde24197a0f7add2bdc4ca83bf2b1ef84a1bc8ccffd95eda17fd836ecb5"}, {file = "pandas-2.2.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:381175499d3802cde0eabbaf6324cce0c4f5d52ca6f8c377c29ad442f50f6348"}, @@ -2316,7 +2224,6 @@ version = "1.5.1" description = "Utilities for writing pandoc filters in python" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -groups = ["main"] files = [ {file = "pandocfilters-1.5.1-py2.py3-none-any.whl", hash = "sha256:93be382804a9cdb0a7267585f157e5d1731bbe5545a85b268d6f5fe6232de2bc"}, {file = "pandocfilters-1.5.1.tar.gz", hash = "sha256:002b4a555ee4ebc03f8b66307e287fa492e4a77b4ea14d3f934328297bb4939e"}, @@ -2328,7 +2235,6 @@ version = "0.8.4" description = "A Python Parser" optional = false python-versions = ">=3.6" -groups = ["main"] files = [ {file = "parso-0.8.4-py2.py3-none-any.whl", hash = "sha256:a418670a20291dacd2dddc80c377c5c3791378ee1e8d12bffc35420643d43f18"}, {file = "parso-0.8.4.tar.gz", hash = "sha256:eb3a7b58240fb99099a345571deecc0f9540ea5f4dd2fe14c2a99d6b281ab92d"}, @@ -2344,7 +2250,6 @@ version = "0.12.1" description = "Utility library for gitignore style pattern matching of file paths." optional = false python-versions = ">=3.8" -groups = ["main", "dev"] files = [ {file = "pathspec-0.12.1-py3-none-any.whl", hash = "sha256:a0d503e138a4c123b27490a4f7beda6a01c6f288df0e4a8b79c7eb0dc7b4cc08"}, {file = "pathspec-0.12.1.tar.gz", hash = "sha256:a482d51503a1ab33b1c67a6c3813a26953dbdc71c31dacaef9a838c4e29f5712"}, @@ -2356,8 +2261,6 @@ version = "4.9.0" description = "Pexpect allows easy control of interactive console applications." optional = false python-versions = "*" -groups = ["main"] -markers = "sys_platform != \"win32\" and sys_platform != \"emscripten\"" files = [ {file = "pexpect-4.9.0-py2.py3-none-any.whl", hash = "sha256:7236d1e080e4936be2dc3e326cec0af72acf9212a7e1d060210e70a47e253523"}, {file = "pexpect-4.9.0.tar.gz", hash = "sha256:ee7d41123f3c9911050ea2c2dac107568dc43b2d3b0c7557a33212c398ead30f"}, @@ -2372,7 +2275,6 @@ version = "11.1.0" description = "Python Imaging Library (Fork)" optional = false python-versions = ">=3.9" -groups = ["main"] files = [ {file = "pillow-11.1.0-cp310-cp310-macosx_10_10_x86_64.whl", hash = "sha256:e1abe69aca89514737465752b4bcaf8016de61b3be1397a8fc260ba33321b3a8"}, {file = "pillow-11.1.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:c640e5a06869c75994624551f45e5506e4256562ead981cce820d5ab39ae2192"}, @@ -2452,7 +2354,7 @@ docs = ["furo", "olefile", "sphinx (>=8.1)", "sphinx-copybutton", "sphinx-inline fpx = ["olefile"] mic = ["olefile"] tests = ["check-manifest", "coverage (>=7.4.2)", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout", "trove-classifiers (>=2024.10.12)"] -typing = ["typing-extensions ; python_version < \"3.10\""] +typing = ["typing-extensions"] xmp = ["defusedxml"] [[package]] @@ -2461,7 +2363,6 @@ version = "4.3.6" description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`." optional = false python-versions = ">=3.8" -groups = ["main", "dev"] files = [ {file = "platformdirs-4.3.6-py3-none-any.whl", hash = "sha256:73e575e1408ab8103900836b97580d5307456908a03e92031bab39e4554cc3fb"}, {file = "platformdirs-4.3.6.tar.gz", hash = "sha256:357fb2acbc885b0419afd3ce3ed34564c13c9b95c89360cd9563f73aa5e2b907"}, @@ -2478,7 +2379,6 @@ version = "5.24.1" description = "An open-source, interactive data visualization library for Python" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "plotly-5.24.1-py3-none-any.whl", hash = "sha256:f67073a1e637eb0dc3e46324d9d51e2fe76e9727c892dde64ddf1e1b51f29089"}, {file = "plotly-5.24.1.tar.gz", hash = "sha256:dbc8ac8339d248a4bcc36e08a5659bacfe1b079390b8953533f4eb22169b4bae"}, @@ -2494,7 +2394,6 @@ version = "1.5.0" description = "plugin and hook calling mechanisms for python" optional = false python-versions = ">=3.8" -groups = ["dev"] files = [ {file = "pluggy-1.5.0-py3-none-any.whl", hash = "sha256:44e1ad92c8ca002de6377e165f3e0f1be63266ab4d554740532335b9d75ea669"}, {file = "pluggy-1.5.0.tar.gz", hash = "sha256:2cffa88e94fdc978c4c574f15f9e59b7f4201d439195c3715ca9e2486f1d0cf1"}, @@ -2510,7 +2409,6 @@ version = "4.1.0" description = "A framework for managing and maintaining multi-language pre-commit hooks." optional = false python-versions = ">=3.9" -groups = ["dev"] files = [ {file = "pre_commit-4.1.0-py2.py3-none-any.whl", hash = "sha256:d29e7cb346295bcc1cc75fc3e92e343495e3ea0196c9ec6ba53f49f10ab6ae7b"}, {file = "pre_commit-4.1.0.tar.gz", hash = "sha256:ae3f018575a588e30dfddfab9a05448bfbd6b73d78709617b5a2b853549716d4"}, @@ -2529,7 +2427,6 @@ version = "0.21.1" description = "Python client for the Prometheus monitoring system." optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "prometheus_client-0.21.1-py3-none-any.whl", hash = "sha256:594b45c410d6f4f8888940fe80b5cc2521b305a1fafe1c58609ef715a001f301"}, {file = "prometheus_client-0.21.1.tar.gz", hash = "sha256:252505a722ac04b0456be05c05f75f45d760c2911ffc45f2a06bcaed9f3ae3fb"}, @@ -2544,7 +2441,6 @@ version = "3.0.50" description = "Library for building powerful interactive command lines in Python" optional = false python-versions = ">=3.8.0" -groups = ["main"] files = [ {file = "prompt_toolkit-3.0.50-py3-none-any.whl", hash = "sha256:9b6427eb19e479d98acff65196a307c555eb567989e6d88ebbb1b509d9779198"}, {file = "prompt_toolkit-3.0.50.tar.gz", hash = "sha256:544748f3860a2623ca5cd6d2795e7a14f3d0e1c3c9728359013f79877fc89bab"}, @@ -2559,7 +2455,6 @@ version = "7.0.0" description = "Cross-platform lib for process and system monitoring in Python. NOTE: the syntax of this script MUST be kept compatible with Python 2.7." optional = false python-versions = ">=3.6" -groups = ["main"] files = [ {file = "psutil-7.0.0-cp36-abi3-macosx_10_9_x86_64.whl", hash = "sha256:101d71dc322e3cffd7cea0650b09b3d08b8e7c4109dd6809fe452dfd00e58b25"}, {file = "psutil-7.0.0-cp36-abi3-macosx_11_0_arm64.whl", hash = "sha256:39db632f6bb862eeccf56660871433e111b6ea58f2caea825571951d4b6aa3da"}, @@ -2583,7 +2478,6 @@ version = "2.9.10" description = "psycopg2 - Python-PostgreSQL Database Adapter" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "psycopg2-2.9.10-cp310-cp310-win32.whl", hash = "sha256:5df2b672140f95adb453af93a7d669d7a7bf0a56bcd26f1502329166f4a61716"}, {file = "psycopg2-2.9.10-cp310-cp310-win_amd64.whl", hash = "sha256:c6f7b8561225f9e711a9c47087388a97fdc948211c10a4bccbf0ba68ab7b3b5a"}, @@ -2603,8 +2497,6 @@ version = "0.7.0" description = "Run a subprocess in a pseudo terminal" optional = false python-versions = "*" -groups = ["main"] -markers = "os_name != \"nt\" or sys_platform != \"win32\" and sys_platform != \"emscripten\"" files = [ {file = "ptyprocess-0.7.0-py2.py3-none-any.whl", hash = "sha256:4b41f3967fce3af57cc7e94b888626c18bf37a083e3651ca8feeb66d492fef35"}, {file = "ptyprocess-0.7.0.tar.gz", hash = "sha256:5c5d0a3b48ceee0b48485e0c26037c0acd7d29765ca3fbb5cb3831d347423220"}, @@ -2616,7 +2508,6 @@ version = "0.2.3" description = "Safely evaluate AST nodes without side effects" optional = false python-versions = "*" -groups = ["main"] files = [ {file = "pure_eval-0.2.3-py3-none-any.whl", hash = "sha256:1db8e35b67b3d218d818ae653e27f06c3aa420901fa7b081ca98cbedc874e0d0"}, {file = "pure_eval-0.2.3.tar.gz", hash = "sha256:5f4e983f40564c576c7c8635ae88db5956bb2229d7e9237d03b3c0b0190eaf42"}, @@ -2631,7 +2522,6 @@ version = "19.0.1" description = "Python library for Apache Arrow" optional = false python-versions = ">=3.9" -groups = ["main"] files = [ {file = "pyarrow-19.0.1-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:fc28912a2dc924dddc2087679cc8b7263accc71b9ff025a1362b004711661a69"}, {file = "pyarrow-19.0.1-cp310-cp310-macosx_12_0_x86_64.whl", hash = "sha256:fca15aabbe9b8355800d923cc2e82c8ef514af321e18b437c3d782aa884eaeec"}, @@ -2686,7 +2576,6 @@ version = "2.12.1" description = "Python style guide checker" optional = false python-versions = ">=3.8" -groups = ["dev"] files = [ {file = "pycodestyle-2.12.1-py2.py3-none-any.whl", hash = "sha256:46f0fb92069a7c28ab7bb558f05bfc0110dac69a0cd23c61ea0040283a9d78b3"}, {file = "pycodestyle-2.12.1.tar.gz", hash = "sha256:6838eae08bbce4f6accd5d5572075c63626a15ee3e6f842df996bf62f6d73521"}, @@ -2698,7 +2587,6 @@ version = "2.22" description = "C parser in Python" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "pycparser-2.22-py3-none-any.whl", hash = "sha256:c3702b6d3dd8c7abc1afa565d7e63d53a1d0bd86cdc24edd75470f4de499cfcc"}, {file = "pycparser-2.22.tar.gz", hash = "sha256:491c8be9c040f5390f5bf44a5b07752bd07f56edf992381b05c701439eec10f6"}, @@ -2710,7 +2598,6 @@ version = "2.10.6" description = "Data validation using Python type hints" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "pydantic-2.10.6-py3-none-any.whl", hash = "sha256:427d664bf0b8a2b34ff5dd0f5a18df00591adcee7198fbd71981054cef37b584"}, {file = "pydantic-2.10.6.tar.gz", hash = "sha256:ca5daa827cce33de7a42be142548b0096bf05a7e7b365aebfa5f8eeec7128236"}, @@ -2723,7 +2610,7 @@ typing-extensions = ">=4.12.2" [package.extras] email = ["email-validator (>=2.0.0)"] -timezone = ["tzdata ; python_version >= \"3.9\" and platform_system == \"Windows\""] +timezone = ["tzdata"] [[package]] name = "pydantic-core" @@ -2731,7 +2618,6 @@ version = "2.27.2" description = "Core functionality for Pydantic validation and serialization" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "pydantic_core-2.27.2-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:2d367ca20b2f14095a8f4fa1210f5a7b78b8a20009ecced6b12818f455b1e9fa"}, {file = "pydantic_core-2.27.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:491a2b73db93fab69731eaee494f320faa4e093dbed776be1a829c2eb222c34c"}, @@ -2844,7 +2730,6 @@ version = "3.2.0" description = "passive checker of Python programs" optional = false python-versions = ">=3.8" -groups = ["dev"] files = [ {file = "pyflakes-3.2.0-py2.py3-none-any.whl", hash = "sha256:84b5be138a2dfbb40689ca07e2152deb896a65c3a3e24c251c5c62489568074a"}, {file = "pyflakes-3.2.0.tar.gz", hash = "sha256:1c61603ff154621fb2a9172037d84dca3500def8c8b630657d1701f026f8af3f"}, @@ -2856,7 +2741,6 @@ version = "2.19.1" description = "Pygments is a syntax highlighting package written in Python." optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "pygments-2.19.1-py3-none-any.whl", hash = "sha256:9ea1544ad55cecf4b8242fab6dd35a93bbce657034b0611ee383099054ab6d8c"}, {file = "pygments-2.19.1.tar.gz", hash = "sha256:61c16d2a8576dc0649d9f39e089b5f02bcd27fba10d8fb4dcc28173f7a45151f"}, @@ -2871,7 +2755,6 @@ version = "0.3.61" description = "HOCON parser for Python" optional = false python-versions = "*" -groups = ["main"] files = [ {file = "pyhocon-0.3.61-py3-none-any.whl", hash = "sha256:73d0f064af9a7d454949c5557284ce1d716cfd8e1383ecc90095fc575d278df0"}, ] @@ -2888,7 +2771,6 @@ version = "3.2.1" description = "pyparsing module - Classes and methods to define and execute parsing grammars" optional = false python-versions = ">=3.9" -groups = ["main"] files = [ {file = "pyparsing-3.2.1-py3-none-any.whl", hash = "sha256:506ff4f4386c4cec0590ec19e6302d3aedb992fdc02c761e90416f158dacf8e1"}, {file = "pyparsing-3.2.1.tar.gz", hash = "sha256:61980854fd66de3a90028d679a954d5f2623e83144b5afe5ee86f43d762e5f0a"}, @@ -2903,7 +2785,6 @@ version = "8.3.5" description = "pytest: simple powerful testing with Python" optional = false python-versions = ">=3.8" -groups = ["dev"] files = [ {file = "pytest-8.3.5-py3-none-any.whl", hash = "sha256:c69214aa47deac29fad6c2a4f590b9c4a9fdb16a403176fe154b79c0b4d4d820"}, {file = "pytest-8.3.5.tar.gz", hash = "sha256:f4efe70cc14e511565ac476b57c279e12a855b11f48f212af1080ef2263d3845"}, @@ -2924,7 +2805,6 @@ version = "2.9.0.post0" description = "Extensions to the standard Python datetime module" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" -groups = ["main"] files = [ {file = "python-dateutil-2.9.0.post0.tar.gz", hash = "sha256:37dd54208da7e1cd875388217d5e00ebd4179249f90fb72437e91a35459a0ad3"}, {file = "python_dateutil-2.9.0.post0-py2.py3-none-any.whl", hash = "sha256:a8b2bc7bffae282281c8140a97d3aa9c14da0b136dfe83f850eea9a5f7470427"}, @@ -2939,7 +2819,6 @@ version = "1.0.1" description = "Read key-value pairs from a .env file and set them as environment variables" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "python-dotenv-1.0.1.tar.gz", hash = "sha256:e324ee90a023d808f1959c46bcbc04446a10ced277783dc6ee09987c37ec10ca"}, {file = "python_dotenv-1.0.1-py3-none-any.whl", hash = "sha256:f7b63ef50f1b690dddf550d03497b66d609393b40b564ed0d674909a68ebf16a"}, @@ -2954,14 +2833,13 @@ version = "3.3.0" description = "JSON Log Formatter for the Python Logging Package" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "python_json_logger-3.3.0-py3-none-any.whl", hash = "sha256:dd980fae8cffb24c13caf6e158d3d61c0d6d22342f932cb6e9deedab3d35eec7"}, {file = "python_json_logger-3.3.0.tar.gz", hash = "sha256:12b7e74b17775e7d565129296105bbe3910842d9d0eb083fc83a6a617aa8df84"}, ] [package.extras] -dev = ["backports.zoneinfo ; python_version < \"3.9\"", "black", "build", "freezegun", "mdx_truly_sane_lists", "mike", "mkdocs", "mkdocs-awesome-pages-plugin", "mkdocs-gen-files", "mkdocs-literate-nav", "mkdocs-material (>=8.5)", "mkdocstrings[python]", "msgspec ; implementation_name != \"pypy\" and python_version < \"3.13\"", "msgspec-python313-pre ; implementation_name != \"pypy\" and python_version == \"3.13\"", "mypy", "orjson ; implementation_name != \"pypy\"", "pylint", "pytest", "tzdata", "validate-pyproject[all]"] +dev = ["backports.zoneinfo", "black", "build", "freezegun", "mdx_truly_sane_lists", "mike", "mkdocs", "mkdocs-awesome-pages-plugin", "mkdocs-gen-files", "mkdocs-literate-nav", "mkdocs-material (>=8.5)", "mkdocstrings[python]", "msgspec", "mypy", "orjson", "pylint", "pytest", "tzdata", "validate-pyproject[all]"] [[package]] name = "pytz" @@ -2969,7 +2847,6 @@ version = "2025.1" description = "World timezone definitions, modern and historical" optional = false python-versions = "*" -groups = ["main"] files = [ {file = "pytz-2025.1-py2.py3-none-any.whl", hash = "sha256:89dd22dca55b46eac6eda23b2d72721bf1bdfef212645d81513ef5d03038de57"}, {file = "pytz-2025.1.tar.gz", hash = "sha256:c2db42be2a2518b28e65f9207c4d05e6ff547d1efa4086469ef855e4ab70178e"}, @@ -2981,8 +2858,6 @@ version = "310" description = "Python for Window Extensions" optional = false python-versions = "*" -groups = ["main"] -markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\"" files = [ {file = "pywin32-310-cp310-cp310-win32.whl", hash = "sha256:6dd97011efc8bf51d6793a82292419eba2c71cf8e7250cfac03bba284454abc1"}, {file = "pywin32-310-cp310-cp310-win_amd64.whl", hash = "sha256:c3e78706e4229b915a0821941a84e7ef420bf2b77e08c9dae3c76fd03fd2ae3d"}, @@ -3008,8 +2883,6 @@ version = "2.0.15" description = "Pseudo terminal support for Windows from Python." optional = false python-versions = ">=3.9" -groups = ["main"] -markers = "os_name == \"nt\"" files = [ {file = "pywinpty-2.0.15-cp310-cp310-win_amd64.whl", hash = "sha256:8e7f5de756a615a38b96cd86fa3cd65f901ce54ce147a3179c45907fa11b4c4e"}, {file = "pywinpty-2.0.15-cp311-cp311-win_amd64.whl", hash = "sha256:9a6bcec2df2707aaa9d08b86071970ee32c5026e10bcc3cc5f6f391d85baf7ca"}, @@ -3026,7 +2899,6 @@ version = "6.0.2" description = "YAML parser and emitter for Python" optional = false python-versions = ">=3.8" -groups = ["main", "dev"] files = [ {file = "PyYAML-6.0.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:0a9a2848a5b7feac301353437eb7d5957887edbf81d56e903999a75a3d743086"}, {file = "PyYAML-6.0.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:29717114e51c84ddfba879543fb232a6ed60086602313ca38cce623c1d62cfbf"}, @@ -3089,7 +2961,6 @@ version = "26.3.0" description = "Python bindings for 0MQ" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "pyzmq-26.3.0-cp310-cp310-macosx_10_15_universal2.whl", hash = "sha256:1586944f4736515af5c6d3a5b150c7e8ca2a2d6e46b23057320584d6f2438f4a"}, {file = "pyzmq-26.3.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:aa7efc695d1fc9f72d91bf9b6c6fe2d7e1b4193836ec530a98faf7d7a7577a58"}, @@ -3195,7 +3066,6 @@ version = "0.36.2" description = "JSON Referencing + Python" optional = false python-versions = ">=3.9" -groups = ["main"] files = [ {file = "referencing-0.36.2-py3-none-any.whl", hash = "sha256:e8699adbbf8b5c7de96d8ffa0eb5c158b3beafce084968e2ea8bb08c6794dcd0"}, {file = "referencing-0.36.2.tar.gz", hash = "sha256:df2e89862cd09deabbdba16944cc3f10feb6b3e6f18e902f7cc25609a34775aa"}, @@ -3212,7 +3082,6 @@ version = "2.32.3" description = "Python HTTP for Humans." optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "requests-2.32.3-py3-none-any.whl", hash = "sha256:70761cfe03c773ceb22aa2f671b4757976145175cdfca038c02654d061d6dcc6"}, {file = "requests-2.32.3.tar.gz", hash = "sha256:55365417734eb18255590a9ff9eb97e9e1da868d4ccd6402399eaf68af20a760"}, @@ -3234,7 +3103,6 @@ version = "0.1.4" description = "A pure python RFC3339 validator" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -groups = ["main"] files = [ {file = "rfc3339_validator-0.1.4-py2.py3-none-any.whl", hash = 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backend for the Xterm.js Javascript terminal emulator library." optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "terminado-0.18.1-py3-none-any.whl", hash = "sha256:a4468e1b37bb318f8a86514f65814e1afc977cf29b3992a4500d9dd305dcceb0"}, {file = "terminado-0.18.1.tar.gz", hash = "sha256:de09f2c4b85de4765f7714688fff57d3e75bad1f909b589fde880460c753fd2e"}, @@ -3763,7 +3616,6 @@ version = "1.4.0" description = "A tiny CSS parser" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "tinycss2-1.4.0-py3-none-any.whl", hash = "sha256:3a49cf47b7675da0b15d0c6e1df8df4ebd96e9394bb905a5775adb0d884c5289"}, {file = "tinycss2-1.4.0.tar.gz", hash = "sha256:10c0972f6fc0fbee87c3edb76549357415e94548c1ae10ebccdea16fb404a9b7"}, @@ -3782,7 +3634,6 @@ version = "6.1.0" description = "A wrapper around the stdlib `tokenize` which roundtrips." optional = false python-versions = ">=3.9" -groups = ["main"] files = [ {file = 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"typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"}, @@ -3855,7 +3702,6 @@ version = "2025.1" description = "Provider of IANA time zone data" optional = false python-versions = ">=2" -groups = ["main"] files = [ {file = "tzdata-2025.1-py2.py3-none-any.whl", hash = "sha256:7e127113816800496f027041c570f50bcd464a020098a3b6b199517772303639"}, {file = "tzdata-2025.1.tar.gz", hash = "sha256:24894909e88cdb28bd1636c6887801df64cb485bd593f2fd83ef29075a81d694"}, @@ -3867,7 +3713,6 @@ version = "1.3.0" description = "RFC 6570 URI Template Processor" optional = false python-versions = ">=3.7" -groups = ["main"] files = [ {file = "uri-template-1.3.0.tar.gz", hash = "sha256:0e00f8eb65e18c7de20d595a14336e9f337ead580c70934141624b6d1ffdacc7"}, {file = "uri_template-1.3.0-py3-none-any.whl", hash = "sha256:a44a133ea12d44a0c0f06d7d42a52d71282e77e2f937d8abd5655b8d56fc1363"}, @@ -3882,14 +3727,13 @@ version = "2.3.0" description = "HTTP library with thread-safe connection pooling, file post, and more." optional = false python-versions = ">=3.9" -groups = ["main"] files = [ {file = "urllib3-2.3.0-py3-none-any.whl", hash = "sha256:1cee9ad369867bfdbbb48b7dd50374c0967a0bb7710050facf0dd6911440e3df"}, {file = "urllib3-2.3.0.tar.gz", hash = "sha256:f8c5449b3cf0861679ce7e0503c7b44b5ec981bec0d1d3795a07f1ba96f0204d"}, ] [package.extras] -brotli = ["brotli (>=1.0.9) ; platform_python_implementation == \"CPython\"", "brotlicffi (>=0.8.0) ; platform_python_implementation != \"CPython\""] +brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"] h2 = ["h2 (>=4,<5)"] socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"] zstd = ["zstandard (>=0.18.0)"] @@ -3900,7 +3744,6 @@ version = "20.29.3" description = "Virtual Python Environment builder" optional = false python-versions = ">=3.8" -groups = ["dev"] files = [ {file = "virtualenv-20.29.3-py3-none-any.whl", hash = "sha256:3e3d00f5807e83b234dfb6122bf37cfadf4be216c53a49ac059d02414f819170"}, {file = "virtualenv-20.29.3.tar.gz", hash = "sha256:95e39403fcf3940ac45bc717597dba16110b74506131845d9b687d5e73d947ac"}, @@ -3913,7 +3756,7 @@ platformdirs = ">=3.9.1,<5" [package.extras] docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2,!=7.3)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"] -test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8) ; platform_python_implementation == \"PyPy\" or platform_python_implementation == \"CPython\" and sys_platform == \"win32\" and python_version >= \"3.13\"", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10) ; platform_python_implementation == \"CPython\""] +test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"] [[package]] name = "wcwidth" @@ -3921,7 +3764,6 @@ version = "0.2.13" description = "Measures the displayed width of unicode strings in a terminal" optional = false python-versions = "*" -groups = ["main"] files = [ {file = "wcwidth-0.2.13-py2.py3-none-any.whl", hash = "sha256:3da69048e4540d84af32131829ff948f1e022c1c6bdb8d6102117aac784f6859"}, {file = "wcwidth-0.2.13.tar.gz", hash = "sha256:72ea0c06399eb286d978fdedb6923a9eb47e1c486ce63e9b4e64fc18303972b5"}, @@ -3933,7 +3775,6 @@ version = "24.11.1" description = "A library for working with the color formats defined by HTML and CSS." optional = false python-versions = ">=3.9" -groups = ["main"] files = [ {file = "webcolors-24.11.1-py3-none-any.whl", hash = "sha256:515291393b4cdf0eb19c155749a096f779f7d909f7cceea072791cb9095b92e9"}, {file = "webcolors-24.11.1.tar.gz", hash = "sha256:ecb3d768f32202af770477b8b65f318fa4f566c22948673a977b00d589dd80f6"}, @@ -3945,7 +3786,6 @@ version = "0.5.1" description = "Character encoding aliases for legacy web content" optional = false python-versions = "*" -groups = ["main"] files = [ {file = "webencodings-0.5.1-py2.py3-none-any.whl", hash = "sha256:a0af1213f3c2226497a97e2b3aa01a7e4bee4f403f95be16fc9acd2947514a78"}, {file = "webencodings-0.5.1.tar.gz", hash = "sha256:b36a1c245f2d304965eb4e0a82848379241dc04b865afcc4aab16748587e1923"}, @@ -3957,7 +3797,6 @@ version = "1.8.0" description = "WebSocket client for Python with low level API options" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "websocket_client-1.8.0-py3-none-any.whl", hash = "sha256:17b44cc997f5c498e809b22cdf2d9c7a9e71c02c8cc2b6c56e7c2d1239bfa526"}, {file = "websocket_client-1.8.0.tar.gz", hash = "sha256:3239df9f44da632f96012472805d40a23281a991027ce11d2f45a6f24ac4c3da"}, @@ -3974,7 +3813,6 @@ version = "4.0.13" description = "Jupyter interactive widgets for Jupyter Notebook" optional = false python-versions = ">=3.7" -groups = ["main"] files = [ {file = "widgetsnbextension-4.0.13-py3-none-any.whl", hash = "sha256:74b2692e8500525cc38c2b877236ba51d34541e6385eeed5aec15a70f88a6c71"}, {file = "widgetsnbextension-4.0.13.tar.gz", hash = "sha256:ffcb67bc9febd10234a362795f643927f4e0c05d9342c727b65d2384f8feacb6"}, @@ -3986,17 +3824,15 @@ version = "1.2.0" description = "A small Python utility to set file creation time on Windows" optional = false python-versions = ">=3.5" -groups = ["main"] -markers = "sys_platform == \"win32\"" files = [ {file = "win32_setctime-1.2.0-py3-none-any.whl", hash = "sha256:95d644c4e708aba81dc3704a116d8cbc974d70b3bdb8be1d150e36be6e9d1390"}, {file = "win32_setctime-1.2.0.tar.gz", hash = "sha256:ae1fdf948f5640aae05c511ade119313fb6a30d7eabe25fef9764dca5873c4c0"}, ] [package.extras] -dev = ["black (>=19.3b0) ; python_version >= \"3.6\"", "pytest (>=4.6.2)"] +dev = ["black (>=19.3b0)", "pytest (>=4.6.2)"] [metadata] -lock-version = "2.1" +lock-version = "2.0" python-versions = ">3.11,<3.13" -content-hash = "104e52c0bb01a1cc3ffdbd925116e4a60b0f0eb5ba93fd60b9ab9ac88225355d" +content-hash = "49609b75a7948b2711d9d89436547c1802f6d7cba6c59a50f448bc1dcc0f534a" From b21258107443bb34dc36b8c99e9180fa5bdffb7d Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Tue, 18 Mar 2025 12:13:17 +0100 Subject: [PATCH 03/41] rollback get lat and lon of coordinate --- pypsdm/db/weather/models.py | 18 ++++-------------- 1 file changed, 4 insertions(+), 14 deletions(-) diff --git a/pypsdm/db/weather/models.py b/pypsdm/db/weather/models.py index 4c23ee5..612a3cf 100644 --- a/pypsdm/db/weather/models.py +++ b/pypsdm/db/weather/models.py @@ -90,26 +90,16 @@ def point(self) -> Point: return loads(wkb_bytes) @property - def latitude(self, session) -> Optional[float]: - """Get latitude value using PostGIS functions.""" - if self.coordinate is not None and session is not None: - from sqlalchemy import func - - return session.scalar(func.ST_Y(func.ST_GeogFromWKB(self.coordinate))) - return None + def latitude(self) -> float: + return self.point.y @property def y(self) -> float: return self.point.y @property - def longitude(self, session) -> Optional[float]: - """Get longitude value using PostGIS functions.""" - if self.coordinate is not None and session is not None: - from sqlalchemy import func - - return session.scalar(func.ST_X(func.ST_GeogFromWKB(self.coordinate))) - return None + def longitude(self) -> float: + return self.point.x @property def x(self) -> float: From e36e8f33ff487166b9842e407a9995c4a2f94d31 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Tue, 18 Mar 2025 13:07:40 +0100 Subject: [PATCH 04/41] make WeatherValue.time noon optional --- pypsdm/db/weather/models.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pypsdm/db/weather/models.py b/pypsdm/db/weather/models.py index 612a3cf..c98982a 100644 --- a/pypsdm/db/weather/models.py +++ b/pypsdm/db/weather/models.py @@ -16,7 +16,7 @@ class WeatherValue(SQLModel, table=True): Represents the ICON weather model. """ - time: Optional[datetime] = Field(primary_key=True) + time: datetime = Field(primary_key=True) coordinate_id: Optional[int] = Field( primary_key=True, default=None, foreign_key="coordinate.id" ) From 44cb898a83fb189638d272f529cc1ca487a316cb Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 08:30:49 +0100 Subject: [PATCH 05/41] adapt lon and lat --- pypsdm/db/weather/models.py | 30 ++++++++++++++++++++---------- 1 file changed, 20 insertions(+), 10 deletions(-) diff --git a/pypsdm/db/weather/models.py b/pypsdm/db/weather/models.py index c98982a..03f2ff5 100644 --- a/pypsdm/db/weather/models.py +++ b/pypsdm/db/weather/models.py @@ -84,18 +84,28 @@ def __hash__(self): return hash(self.id) @property - def point(self) -> Point: - wkb_str = self.coordinate - wkb_bytes = binascii.unhexlify(wkb_str) - return loads(wkb_bytes) + def longitude(self) -> Optional[float]: + """Extract longitude (x) from the coordinate.""" + if self.coordinate is None: + return None + if isinstance(self.coordinate, str) and self.coordinate.startswith("POINT"): + parts = self.coordinate.replace("POINT(", "").replace(")", "").split() + return float(parts[0]) + session = object_session(self) + if session is not None: + return session.scalar(func.ST_X(self.coordinate)) @property - def latitude(self) -> float: - return self.point.y - - @property - def y(self) -> float: - return self.point.y + def latitude(self) -> Optional[float]: + """Extract latitude (y) from the coordinate.""" + if self.coordinate is None: + return None + if isinstance(self.coordinate, str) and self.coordinate.startswith("POINT"): + parts = self.coordinate.replace("POINT(", "").replace(")", "").split() + return float(parts[1]) + session = object_session(self) + if session is not None: + return session.scalar(func.ST_Y(self.coordinate)) @property def longitude(self) -> float: From ec6c39643a25cd33f6f88f7c22625aa69c55129e Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 14:54:48 +0100 Subject: [PATCH 06/41] adapt coordinate sql model and adapt tests --- poetry.lock | 3 +- pypsdm/db/weather/models.py | 46 +++++++-- tests/db/weather/conftest.py | 107 +++++++++++++++++++ tests/db/weather/docker_compose.yml | 19 ++++ tests/db/weather/test_proxy.py | 131 +++++++++++++++--------- tests/db/weather/test_weather_models.py | 62 +++++++++++ 6 files changed, 306 insertions(+), 62 deletions(-) create mode 100644 tests/db/weather/conftest.py create mode 100644 tests/db/weather/docker_compose.yml create mode 100644 tests/db/weather/test_weather_models.py diff --git a/poetry.lock b/poetry.lock index 3aaaba4..36258be 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. [[package]] name = "annotated-types" @@ -2485,7 +2485,6 @@ files = [ {file = "psycopg2-2.9.10-cp311-cp311-win_amd64.whl", hash = "sha256:0435034157049f6846e95103bd8f5a668788dd913a7c30162ca9503fdf542cb4"}, {file = "psycopg2-2.9.10-cp312-cp312-win32.whl", hash = "sha256:65a63d7ab0e067e2cdb3cf266de39663203d38d6a8ed97f5ca0cb315c73fe067"}, {file = "psycopg2-2.9.10-cp312-cp312-win_amd64.whl", hash = "sha256:4a579d6243da40a7b3182e0430493dbd55950c493d8c68f4eec0b302f6bbf20e"}, - {file = "psycopg2-2.9.10-cp313-cp313-win_amd64.whl", hash = "sha256:91fd603a2155da8d0cfcdbf8ab24a2d54bca72795b90d2a3ed2b6da8d979dee2"}, {file = "psycopg2-2.9.10-cp39-cp39-win32.whl", hash = "sha256:9d5b3b94b79a844a986d029eee38998232451119ad653aea42bb9220a8c5066b"}, {file = "psycopg2-2.9.10-cp39-cp39-win_amd64.whl", hash = "sha256:88138c8dedcbfa96408023ea2b0c369eda40fe5d75002c0964c78f46f11fa442"}, {file = "psycopg2-2.9.10.tar.gz", hash = "sha256:12ec0b40b0273f95296233e8750441339298e6a572f7039da5b260e3c8b60e11"}, diff --git a/pypsdm/db/weather/models.py b/pypsdm/db/weather/models.py index 03f2ff5..78eda84 100644 --- a/pypsdm/db/weather/models.py +++ b/pypsdm/db/weather/models.py @@ -1,13 +1,13 @@ -import binascii from datetime import datetime from typing import Optional from geoalchemy2 import Geography from geoalchemy2.elements import WKBElement from pydantic import ConfigDict -from shapely import Point +from shapely.geometry import Point from shapely.wkb import loads -from sqlalchemy import Column +from sqlalchemy import Column, func +from sqlalchemy.orm import object_session from sqlmodel import Field, SQLModel @@ -83,6 +83,22 @@ def __eq__(self, other): def __hash__(self): return hash(self.id) + def _is_valid_wkb_hex(self, hex_str): + """Check if the string is a valid WKB hex representation.""" + try: + # Check if it's valid hex first + if not all(c in "0123456789ABCDEFabcdef" for c in hex_str): + return False + + # Try to convert hex to bytes and validate as geometry using Shapely + wkb_bytes = bytes.fromhex(hex_str) + geom = loads(wkb_bytes) + return geom.is_valid + + except Exception as e: + print(f"Invalid WKB: {hex_str}, Error: {e}") + return False + @property def longitude(self) -> Optional[float]: """Extract longitude (x) from the coordinate.""" @@ -108,14 +124,26 @@ def latitude(self) -> Optional[float]: return session.scalar(func.ST_Y(self.coordinate)) @property - def longitude(self) -> float: - return self.point.x + def y(self) -> float: + return self.latitude @property def x(self) -> float: - return self.point.x + return self.longitude + + @property + def point(self) -> Point: + """Return Shapely Point object.""" + return Point(self.longitude, self.latitude) + + @staticmethod + def from_xy(id: int, x: float, y: float) -> "Coordinate": + """Create a Coordinate object from x (longitude) and y (latitude) values.""" + wkt = f"POINT({x} {y})" + return Coordinate(id=id, coordinate=wkt) @staticmethod - def from_xy(id, x, y): - wkb = Point(x, y).wkb_hex - return Coordinate(id=id, coordinate=wkb) + def from_wkb_hex(id: int, coordinate: str) -> "Coordinate": + wkb_bytes = bytes.fromhex(coordinate) + geom = loads(wkb_bytes) + return Coordinate.from_xy(id=id, x=geom.x, y=geom.y) diff --git a/tests/db/weather/conftest.py b/tests/db/weather/conftest.py new file mode 100644 index 0000000..18061d3 --- /dev/null +++ b/tests/db/weather/conftest.py @@ -0,0 +1,107 @@ +import subprocess +import time + +import pytest +import sqlalchemy +from sqlalchemy import text +from sqlmodel import Session, SQLModel, create_engine + + +@pytest.fixture(scope="session") +def docker_postgres(): + """Start a PostgreSQL container for testing.""" + container_name = "test_postgres_container" + + # Check if the container already exists + check_cmd = [ + "docker", + "ps", + "-a", + "--filter", + f"name={container_name}", + "--format", + "{{.Names}}", + ] + result = subprocess.run(check_cmd, capture_output=True, text=True) + + if container_name in result.stdout: + # Remove existing container + subprocess.run(["docker", "rm", "-f", container_name], check=True) + + # Start a new container + run_cmd = [ + "docker", + "run", + "--name", + container_name, + "-e", + "POSTGRES_USER=postgres", + "-e", + "POSTGRES_PASSWORD=postgres", + "-e", + "POSTGRES_DB=test_db", + "-p", + "5433:5432", + "-d", + "postgis/postgis:17-3.4", + ] + subprocess.run(run_cmd, check=True) + + # Wait for the database to be ready + time.sleep(5) + + yield f"postgresql://postgres:postgres@localhost:5433/test_db" + + # Cleanup + subprocess.run(["docker", "rm", "-f", container_name], check=True) + + +@pytest.fixture(scope="session") +def db_engine(docker_postgres): + """Create a database engine connected to the Docker PostgreSQL instance.""" + engine = create_engine(docker_postgres) + + # Try connecting multiple times with increasing delays + max_retries = 5 + retry_delay = 1 # seconds + + for attempt in range(max_retries): + try: + # Enable PostGIS + with engine.connect() as conn: + conn.execute(text("CREATE EXTENSION IF NOT EXISTS postgis;")) + conn.commit() + + # If we get here, connection was successful + break + + except sqlalchemy.exc.OperationalError as e: + if attempt < max_retries - 1: + print( + f"Connection attempt {attempt + 1} failed. Retrying in {retry_delay}s..." + ) + time.sleep(retry_delay) + retry_delay *= 2 # Exponential backoff + else: + raise Exception( + f"Failed to connect after {max_retries} attempts" + ) from e + + # Create tables + SQLModel.metadata.create_all(engine) + + return engine + + +@pytest.fixture +def db_session(db_engine): + """Create a new database session for a test.""" + with Session(db_engine) as session: + yield session + session.rollback() # Rollback after each test + + +@pytest.fixture(scope="function", autouse=True) +def reset_db(db_engine): + SQLModel.metadata.drop_all(db_engine) + SQLModel.metadata.create_all(db_engine) diff --git a/tests/db/weather/docker_compose.yml b/tests/db/weather/docker_compose.yml new file mode 100644 index 0000000..3269658 --- /dev/null +++ b/tests/db/weather/docker_compose.yml @@ -0,0 +1,19 @@ +version: '3' + +services: + postgis: + image: postgis/postgis:17-3.4 + container_name: test_weather + environment: + - POSTGRES_USER=postgres + - POSTGRES_PASSWORD=postgres + - POSTGRES_DB=test_weather + volumes: + - ./pgdata:/var/lib/postgresql/data + ports: + - "5433:5432" + healthcheck: + test: ["CMD-SHELL", "pg_isready -U postgres"] + interval: 5s + timeout: 5s + retries: 5 \ No newline at end of file diff --git a/tests/db/weather/test_proxy.py b/tests/db/weather/test_proxy.py index 31acdce..7a77864 100644 --- a/tests/db/weather/test_proxy.py +++ b/tests/db/weather/test_proxy.py @@ -1,71 +1,100 @@ import math +from conftest import db_session +from shapely.wkb import loads + from pypsdm.db.weather.models import Coordinate from pypsdm.db.weather.utils import weighted_interpolation_coordinates -def test_weighted_interpolation_coordinates(): - nearest_coordinates = [ - ( - Coordinate( - id=13890, - coordinate="0101000020E610000000000000008026400000000000E04A40", - ), - 15336.967985536437, +def validate_wkb(wkb_element): + """Validate that the given WKBElement represents a valid geometry.""" + try: + # Extract the raw byte data from WKBElement + wkb_bytes = wkb_element.data # Assuming 'data' returns bytes + # Attempt to load the WKB bytes as a Shapely geometry + geom = loads(wkb_bytes) + # Return True if the geometry is valid + return geom.is_valid + except Exception as e: + # Print an error message if validation fails + print(f"Invalid WKB: {wkb_element}, Error: {e}") + return False + + +def test_weighted_interpolation_coordinates(db_session): + """Test weighted interpolation of coordinates.""" + coordinates = [ + Coordinate.from_wkb_hex( + id=13890, + coordinate="0101000020E610000000000000008026400000000000E04A40", ), - ( - Coordinate( - id=13891, - coordinate="0101000020E610000000000000000027400000000000E04A40", - ), - 15741.508288878984, + Coordinate.from_wkb_hex( + id=13891, + coordinate="0101000020E610000000000000000027400000000000E04A40", ), - ( - Coordinate( - id=14079, - coordinate="0101000020E610000000000000008026400000000000C04A40", - ), - 16606.405396805483, + Coordinate.from_wkb_hex( + id=14079, + coordinate="0101000020E610000000000000008026400000000000C04A40", ), - ( - Coordinate( - id=14080, - coordinate="0101000020E610000000000000000027400000000000C04A40", - ), - 16982.92952636213, + Coordinate.from_wkb_hex( + id=14080, + coordinate="0101000020E610000000000000000027400000000000C04A40", ), - ( - Coordinate( - id=13889, - coordinate="0101000020E610000000000000000026400000000000E04A40", - ), - 27650.80452994915, + Coordinate.from_wkb_hex( + id=13889, + coordinate="0101000020E610000000000000000026400000000000E04A40", ), - ( - Coordinate( - id=13892, - coordinate="0101000020E610000000000000008027400000000000E04A40", - ), - 28324.62399357631, + Coordinate.from_wkb_hex( + id=13892, + coordinate="0101000020E610000000000000008027400000000000E04A40", ), - ( - Coordinate( - id=14078, - coordinate="0101000020E610000000000000000026400000000000C04A40", - ), - 28429.952194089583, + Coordinate.from_wkb_hex( + id=14078, + coordinate="0101000020E610000000000000000026400000000000C04A40", ), - ( - Coordinate( - id=14081, - coordinate="0101000020E610000000000000008027400000000000C04A40", - ), - 29089.579082292785, + Coordinate.from_wkb_hex( + id=14081, + coordinate="0101000020E610000000000000008027400000000000C04A40", ), ] + # test = validate_wkb(coordinates[0].coordinate) + + # for coord in coordinates: + # if not validate_wkb(coord.coordinate): # Pass the bytes directly. + # raise ValueError(f"Invalid WKB for coordinate ID {coord.id}") + + # print("test") + # for coord in coordinates: + # print(coord) + # db_session.add(coord) + # db_session.commit() + + db_session.add_all(coordinates) + db_session.commit() long, lat = 11.3692, 53.6315 + + nearest_coordinates = [ + (db_session.get(Coordinate, coord.id), weight) + for coord, weight in zip( + coordinates, + [ + 15336.967985536437, + 15741.508288878984, + 16606.405396805483, + 16982.92952636213, + 27650.80452994915, + 28324.62399357631, + 28429.952194089583, + 29089.579082292785, + ], + ) + ] + closest = weighted_interpolation_coordinates((long, lat), nearest_coordinates) + closest_ids = [c[0].id for c in closest] - assert closest_ids == [13890, 13891, 14079, 14080] + + assert set(closest_ids) == {13890, 13891, 14079, 14080} assert math.isclose(sum([c[1] for c in closest]), 1) diff --git a/tests/db/weather/test_weather_models.py b/tests/db/weather/test_weather_models.py new file mode 100644 index 0000000..7aeb60c --- /dev/null +++ b/tests/db/weather/test_weather_models.py @@ -0,0 +1,62 @@ +from datetime import datetime + +from sqlmodel import select + +from pypsdm.db.weather.models import Coordinate, WeatherValue + + +# Test cases +def test_create_coordinate(db_session): + """Test creating a coordinate.""" + coordinates = [] + coord_from_str = Coordinate(id=1, coordinate="POINT(8.645 50.123)") + coord_from_xy = Coordinate.from_xy(2, 7.46, 51.5) + coordinates: list[Coordinate] = coordinates + [coord_from_str, coord_from_xy] + db_session.add_all(coordinates) + db_session.commit() + + first_coordinate = db_session.get(Coordinate, 1) + second_coordinate = db_session.get(Coordinate, 2) + missing_coordinate = db_session.get(Coordinate, 3) + assert first_coordinate is not None + assert first_coordinate.longitude == 8.645 + assert first_coordinate.latitude == 50.123 + assert second_coordinate is not None + assert second_coordinate.x == 7.46 + assert second_coordinate.y == 51.5 + assert missing_coordinate is None + + +def test_create_weather_value(db_session): + """Test creating a weather value.""" + # First create a coordinate + berlin = Coordinate.from_xy(id=1, x=13.405, y=52.52) + db_session.add(berlin) + db_session.commit() + + # Create a weather value + now = datetime.now() + weather = WeatherValue( + time=now, + coordinate_id=berlin.id, + aswdifd_s=210.5, + aswdir_s=620.3, + t2m=293.15, # 20°C in Kelvin + u131m=5.5, + v131m=2.2, + ) + db_session.add(weather) + db_session.commit() + + # Retrieve it + retrieved = db_session.exec( + select(WeatherValue).where( + WeatherValue.time == now, WeatherValue.coordinate_id == berlin.id + ) + ).first() + + assert retrieved is not None + assert retrieved.coordinate_id == berlin.id + assert abs(retrieved.temperature - 20.0) < 0.1 # t2m - 273.15 + assert retrieved.diffuse_irradiance == 210.5 + assert retrieved.direct_irradiance == 620.3 From 0f4f0e0728e897fe75354685c79dd3d12dee1c1c Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 14:58:25 +0100 Subject: [PATCH 07/41] remove unnecessary things, fmt etc. --- tests/db/weather/conftest.py | 2 +- tests/db/weather/test_proxy.py | 30 ------------------------------ 2 files changed, 1 insertion(+), 31 deletions(-) diff --git a/tests/db/weather/conftest.py b/tests/db/weather/conftest.py index 18061d3..9d15664 100644 --- a/tests/db/weather/conftest.py +++ b/tests/db/weather/conftest.py @@ -50,7 +50,7 @@ def docker_postgres(): # Wait for the database to be ready time.sleep(5) - yield f"postgresql://postgres:postgres@localhost:5433/test_db" + yield "postgresql://postgres:postgres@localhost:5433/test_db" # Cleanup subprocess.run(["docker", "rm", "-f", container_name], check=True) diff --git a/tests/db/weather/test_proxy.py b/tests/db/weather/test_proxy.py index 7a77864..2a37dab 100644 --- a/tests/db/weather/test_proxy.py +++ b/tests/db/weather/test_proxy.py @@ -1,27 +1,9 @@ import math -from conftest import db_session -from shapely.wkb import loads - from pypsdm.db.weather.models import Coordinate from pypsdm.db.weather.utils import weighted_interpolation_coordinates -def validate_wkb(wkb_element): - """Validate that the given WKBElement represents a valid geometry.""" - try: - # Extract the raw byte data from WKBElement - wkb_bytes = wkb_element.data # Assuming 'data' returns bytes - # Attempt to load the WKB bytes as a Shapely geometry - geom = loads(wkb_bytes) - # Return True if the geometry is valid - return geom.is_valid - except Exception as e: - # Print an error message if validation fails - print(f"Invalid WKB: {wkb_element}, Error: {e}") - return False - - def test_weighted_interpolation_coordinates(db_session): """Test weighted interpolation of coordinates.""" coordinates = [ @@ -59,18 +41,6 @@ def test_weighted_interpolation_coordinates(db_session): ), ] - # test = validate_wkb(coordinates[0].coordinate) - - # for coord in coordinates: - # if not validate_wkb(coord.coordinate): # Pass the bytes directly. - # raise ValueError(f"Invalid WKB for coordinate ID {coord.id}") - - # print("test") - # for coord in coordinates: - # print(coord) - # db_session.add(coord) - # db_session.commit() - db_session.add_all(coordinates) db_session.commit() long, lat = 11.3692, 53.6315 From 10b47d0c338e65a75998c5d58a4b5a9e6d2944df Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 15:08:07 +0100 Subject: [PATCH 08/41] docker compose compatibility --- tests/db/weather/docker_compose.yml | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/tests/db/weather/docker_compose.yml b/tests/db/weather/docker_compose.yml index 3269658..040452e 100644 --- a/tests/db/weather/docker_compose.yml +++ b/tests/db/weather/docker_compose.yml @@ -9,11 +9,14 @@ services: - POSTGRES_PASSWORD=postgres - POSTGRES_DB=test_weather volumes: - - ./pgdata:/var/lib/postgresql/data + - pgdata:/var/lib/postgresql/data ports: - "5433:5432" healthcheck: test: ["CMD-SHELL", "pg_isready -U postgres"] interval: 5s timeout: 5s - retries: 5 \ No newline at end of file + retries: 5 + +volumes: + pgdata: \ No newline at end of file From 956b5644357aa2f4a683b160386610ff6a267791 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 15:21:41 +0100 Subject: [PATCH 09/41] skip tests if docker is required but not available --- .github/workflows/ci.yml | 20 +++++++++++++++++--- tests/db/weather/test_proxy.py | 3 +++ tests/db/weather/test_weather_models.py | 4 +++- 3 files changed, 23 insertions(+), 4 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 962b482..1c748ca 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -85,9 +85,23 @@ jobs: - name: Install library run: poetry install --no-interaction #---------------------------------------------- - # run test suite + # run test suite conditionally based on OS #---------------------------------------------- - - name: Run tests + - name: Run tests on Ubuntu with Docker + if: matrix.os == 'ubuntu-latest' run: | - source $VENV + docker-compose up --build -d pytest tests/ + + # No Docker on Windows + - name: Run tests without Docker on Windows + if: matrix.os == 'windows-latest' + run: | + pytest -m "not docker_required" tests/ + #---------------------------------------------- + # Cleanup step after running tests on Ubuntu + #---------------------------------------------- + - name: Cleanup Docker containers and images + if: matrix.os == 'ubuntu-latest' + run: | + docker-compose down --volumes --remove-orphans || true diff --git a/tests/db/weather/test_proxy.py b/tests/db/weather/test_proxy.py index 2a37dab..2086a74 100644 --- a/tests/db/weather/test_proxy.py +++ b/tests/db/weather/test_proxy.py @@ -1,9 +1,12 @@ import math +import pytest + from pypsdm.db.weather.models import Coordinate from pypsdm.db.weather.utils import weighted_interpolation_coordinates +@pytest.mark.docker_required def test_weighted_interpolation_coordinates(db_session): """Test weighted interpolation of coordinates.""" coordinates = [ diff --git a/tests/db/weather/test_weather_models.py b/tests/db/weather/test_weather_models.py index 7aeb60c..803b57d 100644 --- a/tests/db/weather/test_weather_models.py +++ b/tests/db/weather/test_weather_models.py @@ -1,11 +1,12 @@ from datetime import datetime +import pytest from sqlmodel import select from pypsdm.db.weather.models import Coordinate, WeatherValue -# Test cases +@pytest.mark.docker_required def test_create_coordinate(db_session): """Test creating a coordinate.""" coordinates = [] @@ -27,6 +28,7 @@ def test_create_coordinate(db_session): assert missing_coordinate is None +@pytest.mark.docker_required def test_create_weather_value(db_session): """Test creating a weather value.""" # First create a coordinate From 76a12681582fd2b121ebbe5088ddae8055b2ba2f Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 15:25:30 +0100 Subject: [PATCH 10/41] adapt ci --- .github/workflows/ci.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 1c748ca..bcc1054 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -90,13 +90,14 @@ jobs: - name: Run tests on Ubuntu with Docker if: matrix.os == 'ubuntu-latest' run: | - docker-compose up --build -d + source $VENV pytest tests/ # No Docker on Windows - name: Run tests without Docker on Windows if: matrix.os == 'windows-latest' run: | + source $VENV pytest -m "not docker_required" tests/ #---------------------------------------------- # Cleanup step after running tests on Ubuntu From 1daedc9eee3027aba9559dec0af87acb0950941a Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 15:32:40 +0100 Subject: [PATCH 11/41] ci --- .github/workflows/ci.yml | 12 ++---------- 1 file changed, 2 insertions(+), 10 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index bcc1054..0cc5a53 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -85,7 +85,7 @@ jobs: - name: Install library run: poetry install --no-interaction #---------------------------------------------- - # run test suite conditionally based on OS + # Run tests conditionally based on OS #---------------------------------------------- - name: Run tests on Ubuntu with Docker if: matrix.os == 'ubuntu-latest' @@ -97,12 +97,4 @@ jobs: - name: Run tests without Docker on Windows if: matrix.os == 'windows-latest' run: | - source $VENV - pytest -m "not docker_required" tests/ - #---------------------------------------------- - # Cleanup step after running tests on Ubuntu - #---------------------------------------------- - - name: Cleanup Docker containers and images - if: matrix.os == 'ubuntu-latest' - run: | - docker-compose down --volumes --remove-orphans || true + pytest tests/ From 5b69a4b5e0a995cdd7ec8ba5e8185d7ca6c9c9dd Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 15:42:13 +0100 Subject: [PATCH 12/41] start docker before --- .github/workflows/ci.yml | 16 +++++++--------- 1 file changed, 7 insertions(+), 9 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 0cc5a53..4dd3604 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -56,6 +56,11 @@ jobs: uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} + + - name: Start Docker service (Windows only) + if: runner.os == 'windows-latest' + run: | + Start-Service docker #---------------------------------------------- # ----- install & configure poetry ----- #---------------------------------------------- @@ -85,16 +90,9 @@ jobs: - name: Install library run: poetry install --no-interaction #---------------------------------------------- - # Run tests conditionally based on OS + # run test suite #---------------------------------------------- - - name: Run tests on Ubuntu with Docker - if: matrix.os == 'ubuntu-latest' + - name: Run tests run: | source $VENV pytest tests/ - - # No Docker on Windows - - name: Run tests without Docker on Windows - if: matrix.os == 'windows-latest' - run: | - pytest tests/ From 233e6ae9f8034449fc7f8b1f0fd2fafff5043b82 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 15:46:46 +0100 Subject: [PATCH 13/41] start docker --- .github/workflows/ci.yml | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 4dd3604..effaef1 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -56,9 +56,10 @@ jobs: uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - - - name: Start Docker service (Windows only) - if: runner.os == 'windows-latest' + #---------------------------------------------- + # ----- Start Docker + #---------------------------------------------- + - name: Start Docker service run: | Start-Service docker #---------------------------------------------- From 7fb9dcde94f97396f475a4b49018f35cec8d9520 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 15:55:02 +0100 Subject: [PATCH 14/41] try docker desktop --- .github/workflows/ci.yml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index effaef1..64600a9 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -57,12 +57,6 @@ jobs: with: python-version: ${{ matrix.python-version }} #---------------------------------------------- - # ----- Start Docker - #---------------------------------------------- - - name: Start Docker service - run: | - Start-Service docker - #---------------------------------------------- # ----- install & configure poetry ----- #---------------------------------------------- - name: Install Poetry @@ -91,6 +85,12 @@ jobs: - name: Install library run: poetry install --no-interaction #---------------------------------------------- + # Install docker on Windows + #---------------------------------------------- + - name: Set up Docker on Windows + if: runner.os == 'Windows' + uses: crazy-max/ghaction-setup-docker@v1 + #---------------------------------------------- # run test suite #---------------------------------------------- - name: Run tests From 7b1954964de362971778ea6da99965927583d2f3 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 15:58:02 +0100 Subject: [PATCH 15/41] some more ci tests --- .github/workflows/ci.yml | 11 +++++++++-- 1 file changed, 9 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 64600a9..ef5e1a6 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -93,7 +93,14 @@ jobs: #---------------------------------------------- # run test suite #---------------------------------------------- - - name: Run tests + - name: Run tests (Linux) + if: runner.os == 'Linux' run: | - source $VENV + source .venv/bin/activate pytest tests/ + + - name: Run tests (Windows) + if: runner.os == 'Windows' + run: | + source .venv/Scripts/activate + pytest tests/ \ No newline at end of file From 11158623f91ddea515664293f4d347c264989f03 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 16:02:50 +0100 Subject: [PATCH 16/41] even more ci try --- .github/workflows/ci.yml | 44 ++++++++++++++++++++++------------------ 1 file changed, 24 insertions(+), 20 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index ef5e1a6..5bb8dc3 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -37,20 +37,18 @@ jobs: test: needs: linting strategy: - fail-fast: true + fail-fast: false matrix: os: [ "ubuntu-latest", "windows-latest" ] python-version: [ "3.12"] runs-on: ${{ matrix.os }} - defaults: - run: - shell: bash steps: - #---------------------------------------------- - # check-out repo and set-up python - #---------------------------------------------- + # Checkout with fetch-depth: 0 to ensure all history is available - name: Check out repository uses: actions/checkout@v3 + with: + fetch-depth: 0 + - name: Set up python ${{ matrix.python-version }} id: setup-python uses: actions/setup-python@v4 @@ -72,10 +70,8 @@ jobs: uses: actions/cache@v3 with: path: .venv - key: v1-venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - #---------------------------------------------- - # install dependencies if cache does not exist - #---------------------------------------------- + key: v2-venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} + - name: Install dependencies if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' run: poetry install --no-interaction --no-root @@ -84,23 +80,31 @@ jobs: #---------------------------------------------- - name: Install library run: poetry install --no-interaction - #---------------------------------------------- - # Install docker on Windows - #---------------------------------------------- + + # Docker setup for Windows - name: Set up Docker on Windows if: runner.os == 'Windows' - uses: crazy-max/ghaction-setup-docker@v1 - #---------------------------------------------- - # run test suite - #---------------------------------------------- + uses: docker/setup-buildx-action@v2 + + # Verify Docker is running on Windows + - name: Verify Docker is running (Windows) + if: runner.os == 'Windows' + shell: bash + run: | + docker info || echo "Docker not running" + docker run --rm hello-world || echo "Docker test failed" + + # Run tests based on OS - name: Run tests (Linux) if: runner.os == 'Linux' + shell: bash run: | source .venv/bin/activate - pytest tests/ + pytest tests/ -v - name: Run tests (Windows) if: runner.os == 'Windows' + shell: bash run: | source .venv/Scripts/activate - pytest tests/ \ No newline at end of file + pytest tests/ -v \ No newline at end of file From e1eca76e3e09a8f8a34fa61fdb53014861ccb7da Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 16:09:44 +0100 Subject: [PATCH 17/41] even more ci tries --- .github/workflows/ci.yml | 54 ++++++++++++++++------------------------ 1 file changed, 22 insertions(+), 32 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 5bb8dc3..013326b 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -37,18 +37,20 @@ jobs: test: needs: linting strategy: - fail-fast: false + fail-fast: true matrix: os: [ "ubuntu-latest", "windows-latest" ] python-version: [ "3.12"] runs-on: ${{ matrix.os }} + defaults: + run: + shell: bash steps: - # Checkout with fetch-depth: 0 to ensure all history is available + #---------------------------------------------- + # check-out repo and set-up python + #---------------------------------------------- - name: Check out repository uses: actions/checkout@v3 - with: - fetch-depth: 0 - - name: Set up python ${{ matrix.python-version }} id: setup-python uses: actions/setup-python@v4 @@ -70,8 +72,10 @@ jobs: uses: actions/cache@v3 with: path: .venv - key: v2-venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - + key: v1-venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} + #---------------------------------------------- + # install dependencies if cache does not exist + #---------------------------------------------- - name: Install dependencies if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' run: poetry install --no-interaction --no-root @@ -80,31 +84,17 @@ jobs: #---------------------------------------------- - name: Install library run: poetry install --no-interaction - - # Docker setup for Windows - - name: Set up Docker on Windows - if: runner.os == 'Windows' - uses: docker/setup-buildx-action@v2 - - # Verify Docker is running on Windows - - name: Verify Docker is running (Windows) - if: runner.os == 'Windows' - shell: bash - run: | - docker info || echo "Docker not running" - docker run --rm hello-world || echo "Docker test failed" - - # Run tests based on OS - - name: Run tests (Linux) - if: runner.os == 'Linux' - shell: bash + #---------------------------------------------- + # run test suite + #---------------------------------------------- + - name: Run tests (Ubuntu - all tests) + if: matrix.os == 'ubuntu-latest' run: | - source .venv/bin/activate - pytest tests/ -v + source $VENV + pytest tests/ - - name: Run tests (Windows) - if: runner.os == 'Windows' - shell: bash + - name: Run tests (Windows - skip Docker tests) + if: matrix.os == 'windows-latest' run: | - source .venv/Scripts/activate - pytest tests/ -v \ No newline at end of file + source $VENV + pytest tests/ -m "not docker_required" \ No newline at end of file From 6c624fb2a41f9e637909c7aad01d2405277b6cb7 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 16:12:41 +0100 Subject: [PATCH 18/41] even more more ci tries --- .github/workflows/ci.yml | 18 ++++++++---------- 1 file changed, 8 insertions(+), 10 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 013326b..7725f55 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -87,14 +87,12 @@ jobs: #---------------------------------------------- # run test suite #---------------------------------------------- - - name: Run tests (Ubuntu - all tests) - if: matrix.os == 'ubuntu-latest' + - name: Run tests run: | - source $VENV - pytest tests/ - - - name: Run tests (Windows - skip Docker tests) - if: matrix.os == 'windows-latest' - run: | - source $VENV - pytest tests/ -m "not docker_required" \ No newline at end of file + if [[ "${{ matrix.os }}" == "windows-latest" ]]; then + source .venv/Scripts/activate + pytest tests/ -m "not docker_required" + else + source .venv/bin/activate + pytest tests/ + fi From c51c1f8ef19477e75a6ad2e9ff85c3268b879288 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 16:16:36 +0100 Subject: [PATCH 19/41] next try --- .github/workflows/ci.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 7725f55..71d99b0 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -90,9 +90,9 @@ jobs: - name: Run tests run: | if [[ "${{ matrix.os }}" == "windows-latest" ]]; then - source .venv/Scripts/activate + source $VENV pytest tests/ -m "not docker_required" else - source .venv/bin/activate + source $VENV pytest tests/ fi From 06558737665e8269c066226d4cc322508a6b3f8d Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 16:22:41 +0100 Subject: [PATCH 20/41] try another approach --- .github/workflows/ci.yml | 9 ++------- tests/db/weather/conftest.py | 3 +++ tests/db/weather/test_proxy.py | 3 +++ tests/db/weather/test_weather_models.py | 3 +++ 4 files changed, 11 insertions(+), 7 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 71d99b0..962b482 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -89,10 +89,5 @@ jobs: #---------------------------------------------- - name: Run tests run: | - if [[ "${{ matrix.os }}" == "windows-latest" ]]; then - source $VENV - pytest tests/ -m "not docker_required" - else - source $VENV - pytest tests/ - fi + source $VENV + pytest tests/ diff --git a/tests/db/weather/conftest.py b/tests/db/weather/conftest.py index 9d15664..da0dc3e 100644 --- a/tests/db/weather/conftest.py +++ b/tests/db/weather/conftest.py @@ -1,3 +1,4 @@ +import platform import subprocess import time @@ -8,6 +9,8 @@ @pytest.fixture(scope="session") +@pytest.mark.skipif(platform.system() == "Windows", + reason="Docker tests skipped on Windows") def docker_postgres(): """Start a PostgreSQL container for testing.""" container_name = "test_postgres_container" diff --git a/tests/db/weather/test_proxy.py b/tests/db/weather/test_proxy.py index 2086a74..a7364dd 100644 --- a/tests/db/weather/test_proxy.py +++ b/tests/db/weather/test_proxy.py @@ -1,4 +1,5 @@ import math +import platform import pytest @@ -7,6 +8,8 @@ @pytest.mark.docker_required +@pytest.mark.skipif(platform.system() == "Windows", + reason="Docker tests skipped on Windows") def test_weighted_interpolation_coordinates(db_session): """Test weighted interpolation of coordinates.""" coordinates = [ diff --git a/tests/db/weather/test_weather_models.py b/tests/db/weather/test_weather_models.py index 803b57d..6c381d2 100644 --- a/tests/db/weather/test_weather_models.py +++ b/tests/db/weather/test_weather_models.py @@ -1,3 +1,4 @@ +import platform from datetime import datetime import pytest @@ -7,6 +8,8 @@ @pytest.mark.docker_required +@pytest.mark.skipif(platform.system() == "Windows", + reason="Docker tests skipped on Windows") def test_create_coordinate(db_session): """Test creating a coordinate.""" coordinates = [] From 7ee0955e143c71ba545b3d17ffcb1540b5013fa3 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 16:28:10 +0100 Subject: [PATCH 21/41] fmt --- poetry.lock | 9 ++++----- tests/db/weather/conftest.py | 5 +++-- tests/db/weather/test_proxy.py | 5 +++-- tests/db/weather/test_weather_models.py | 5 +++-- 4 files changed, 13 insertions(+), 11 deletions(-) diff --git a/poetry.lock b/poetry.lock index af91d6b..bec46f9 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1838,13 +1838,13 @@ files = [ [[package]] name = "mistune" -version = "3.1.2" +version = "3.1.3" description = "A sane and fast Markdown parser with useful plugins and renderers" optional = false python-versions = ">=3.8" files = [ - {file = "mistune-3.1.2-py3-none-any.whl", hash = "sha256:4b47731332315cdca99e0ded46fc0004001c1299ff773dfb48fbe1fd226de319"}, - {file = "mistune-3.1.2.tar.gz", hash = "sha256:733bf018ba007e8b5f2d3a9eb624034f6ee26c4ea769a98ec533ee111d504dff"}, + {file = "mistune-3.1.3-py3-none-any.whl", hash = "sha256:1a32314113cff28aa6432e99e522677c8587fd83e3d51c29b82a52409c842bd9"}, + {file = "mistune-3.1.3.tar.gz", hash = "sha256:a7035c21782b2becb6be62f8f25d3df81ccb4d6fa477a6525b15af06539f02a0"}, ] [[package]] @@ -1864,7 +1864,6 @@ version = "1.31.0" description = "Extremely lightweight compatibility layer between dataframe libraries" optional = false python-versions = ">=3.8" -groups = ["main"] files = [ {file = "narwhals-1.31.0-py3-none-any.whl", hash = "sha256:2a7b79bb5f511055c4c0142121fc0d4171ea171458e12d44dbd9c8fc6488e997"}, {file = "narwhals-1.31.0.tar.gz", hash = "sha256:333472e2562343dfdd27407ec9b5114a07c81d0416794e4ac6b703dd925c6a1a"}, @@ -3852,4 +3851,4 @@ dev = ["black (>=19.3b0)", "pytest (>=4.6.2)"] [metadata] lock-version = "2.0" python-versions = ">3.11,<3.13" -content-hash = "96d3c69a3ecb57fef52a8c5b6cad8dc5b7aaa20186e3c82b99cf9db38359dfd1" +content-hash = "1763c090ce596b3feb932b62cb06c25f2769da0c24ae974ddb2cabdb31ce6278" diff --git a/tests/db/weather/conftest.py b/tests/db/weather/conftest.py index da0dc3e..ac50c29 100644 --- a/tests/db/weather/conftest.py +++ b/tests/db/weather/conftest.py @@ -9,8 +9,9 @@ @pytest.fixture(scope="session") -@pytest.mark.skipif(platform.system() == "Windows", - reason="Docker tests skipped on Windows") +@pytest.mark.skipif( + platform.system() == "Windows", reason="Docker tests skipped on Windows" +) def docker_postgres(): """Start a PostgreSQL container for testing.""" container_name = "test_postgres_container" diff --git a/tests/db/weather/test_proxy.py b/tests/db/weather/test_proxy.py index a7364dd..8f7dfd2 100644 --- a/tests/db/weather/test_proxy.py +++ b/tests/db/weather/test_proxy.py @@ -8,8 +8,9 @@ @pytest.mark.docker_required -@pytest.mark.skipif(platform.system() == "Windows", - reason="Docker tests skipped on Windows") +@pytest.mark.skipif( + platform.system() == "Windows", reason="Docker tests skipped on Windows" +) def test_weighted_interpolation_coordinates(db_session): """Test weighted interpolation of coordinates.""" coordinates = [ diff --git a/tests/db/weather/test_weather_models.py b/tests/db/weather/test_weather_models.py index 6c381d2..15a0e8a 100644 --- a/tests/db/weather/test_weather_models.py +++ b/tests/db/weather/test_weather_models.py @@ -8,8 +8,9 @@ @pytest.mark.docker_required -@pytest.mark.skipif(platform.system() == "Windows", - reason="Docker tests skipped on Windows") +@pytest.mark.skipif( + platform.system() == "Windows", reason="Docker tests skipped on Windows" +) def test_create_coordinate(db_session): """Test creating a coordinate.""" coordinates = [] From ba220873a7d9b41c8b006fdff25747da41dcfd2a Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 16:37:19 +0100 Subject: [PATCH 22/41] remove pytest marks --- tests/db/weather/conftest.py | 4 ---- tests/db/weather/test_proxy.py | 1 - tests/db/weather/test_weather_models.py | 1 - 3 files changed, 6 deletions(-) diff --git a/tests/db/weather/conftest.py b/tests/db/weather/conftest.py index ac50c29..9d15664 100644 --- a/tests/db/weather/conftest.py +++ b/tests/db/weather/conftest.py @@ -1,4 +1,3 @@ -import platform import subprocess import time @@ -9,9 +8,6 @@ @pytest.fixture(scope="session") -@pytest.mark.skipif( - platform.system() == "Windows", reason="Docker tests skipped on Windows" -) def docker_postgres(): """Start a PostgreSQL container for testing.""" container_name = "test_postgres_container" diff --git a/tests/db/weather/test_proxy.py b/tests/db/weather/test_proxy.py index 8f7dfd2..9c61614 100644 --- a/tests/db/weather/test_proxy.py +++ b/tests/db/weather/test_proxy.py @@ -7,7 +7,6 @@ from pypsdm.db.weather.utils import weighted_interpolation_coordinates -@pytest.mark.docker_required @pytest.mark.skipif( platform.system() == "Windows", reason="Docker tests skipped on Windows" ) diff --git a/tests/db/weather/test_weather_models.py b/tests/db/weather/test_weather_models.py index 15a0e8a..9eed38c 100644 --- a/tests/db/weather/test_weather_models.py +++ b/tests/db/weather/test_weather_models.py @@ -7,7 +7,6 @@ from pypsdm.db.weather.models import Coordinate, WeatherValue -@pytest.mark.docker_required @pytest.mark.skipif( platform.system() == "Windows", reason="Docker tests skipped on Windows" ) From 3e9bf5b3909088f48849a4d63856162169528631 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 16:41:17 +0100 Subject: [PATCH 23/41] poetry --- poetry.lock | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/poetry.lock b/poetry.lock index 6051855..bfcfa1c 100644 --- a/poetry.lock +++ b/poetry.lock @@ -3870,4 +3870,4 @@ dev = ["black (>=19.3b0)", "pytest (>=4.6.2)"] [metadata] lock-version = "2.0" python-versions = ">3.11,<3.13" -content-hash = "4e9c1d2ab2b3bc2dbd84f4cc2346ef9b7387cc0f9743623903c97a9f2f8e6b06" +content-hash = "ec144b0b59e7d720ea5221062f841d38d1f32a9d326b6d00ff60c2d4caa9659b" From 43297baaf3146d93eb09f0182b5c3905823b01d5 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 16:48:46 +0100 Subject: [PATCH 24/41] test additional marks --- tests/db/weather/conftest.py | 14 +++++++++++++- 1 file changed, 13 insertions(+), 1 deletion(-) diff --git a/tests/db/weather/conftest.py b/tests/db/weather/conftest.py index 9d15664..686ef61 100644 --- a/tests/db/weather/conftest.py +++ b/tests/db/weather/conftest.py @@ -1,3 +1,4 @@ +import platform import subprocess import time @@ -7,7 +8,9 @@ from sqlmodel import Session, SQLModel, create_engine -@pytest.fixture(scope="session") +@pytest.mark.skipif( + platform.system() == "Windows", reason="Docker tests skipped on Windows" +) def docker_postgres(): """Start a PostgreSQL container for testing.""" container_name = "test_postgres_container" @@ -56,6 +59,9 @@ def docker_postgres(): subprocess.run(["docker", "rm", "-f", container_name], check=True) +@pytest.mark.skipif( + platform.system() == "Windows", reason="Docker tests skipped on Windows" +) @pytest.fixture(scope="session") def db_engine(docker_postgres): """Create a database engine connected to the Docker PostgreSQL instance.""" @@ -93,6 +99,9 @@ def db_engine(docker_postgres): return engine +@pytest.mark.skipif( + platform.system() == "Windows", reason="Docker tests skipped on Windows" +) @pytest.fixture def db_session(db_engine): """Create a new database session for a test.""" @@ -101,6 +110,9 @@ def db_session(db_engine): session.rollback() # Rollback after each test +@pytest.mark.skipif( + platform.system() == "Windows", reason="Docker tests skipped on Windows" +) @pytest.fixture(scope="function", autouse=True) def reset_db(db_engine): SQLModel.metadata.drop_all(db_engine) From 5df6fe939a07899ce88189063e5b61cafcf21788 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 16:53:14 +0100 Subject: [PATCH 25/41] remove some marks --- tests/db/weather/conftest.py | 9 --------- 1 file changed, 9 deletions(-) diff --git a/tests/db/weather/conftest.py b/tests/db/weather/conftest.py index 686ef61..f623104 100644 --- a/tests/db/weather/conftest.py +++ b/tests/db/weather/conftest.py @@ -59,9 +59,6 @@ def docker_postgres(): subprocess.run(["docker", "rm", "-f", container_name], check=True) -@pytest.mark.skipif( - platform.system() == "Windows", reason="Docker tests skipped on Windows" -) @pytest.fixture(scope="session") def db_engine(docker_postgres): """Create a database engine connected to the Docker PostgreSQL instance.""" @@ -99,9 +96,6 @@ def db_engine(docker_postgres): return engine -@pytest.mark.skipif( - platform.system() == "Windows", reason="Docker tests skipped on Windows" -) @pytest.fixture def db_session(db_engine): """Create a new database session for a test.""" @@ -110,9 +104,6 @@ def db_session(db_engine): session.rollback() # Rollback after each test -@pytest.mark.skipif( - platform.system() == "Windows", reason="Docker tests skipped on Windows" -) @pytest.fixture(scope="function", autouse=True) def reset_db(db_engine): SQLModel.metadata.drop_all(db_engine) From 5b8c9a3f5bbb1910f0d8df7a03af84127c73de0d Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 16:59:02 +0100 Subject: [PATCH 26/41] rollback fixture conftest --- tests/db/weather/conftest.py | 1 + 1 file changed, 1 insertion(+) diff --git a/tests/db/weather/conftest.py b/tests/db/weather/conftest.py index f623104..ac50c29 100644 --- a/tests/db/weather/conftest.py +++ b/tests/db/weather/conftest.py @@ -8,6 +8,7 @@ from sqlmodel import Session, SQLModel, create_engine +@pytest.fixture(scope="session") @pytest.mark.skipif( platform.system() == "Windows", reason="Docker tests skipped on Windows" ) From 27e4e2295af3fbbc2d2156ac7eedd02e10c4769e Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 17:11:11 +0100 Subject: [PATCH 27/41] at mark and try check os again --- .github/workflows/ci.yml | 6 ++++++ tests/db/weather/conftest.py | 7 ++++--- tests/db/weather/test_proxy.py | 5 +---- tests/db/weather/test_weather_models.py | 5 +---- 4 files changed, 12 insertions(+), 11 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 962b482..c7da0cd 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -88,6 +88,12 @@ jobs: # run test suite #---------------------------------------------- - name: Run tests + if: matrix.os != 'windows-latest' run: | source $VENV pytest tests/ + - name: Run tests (Windows - skip Docker tests) + if: matrix.os == 'windows-latest' + run: | + source $VENV + pytest tests/ -m "not docker_required" diff --git a/tests/db/weather/conftest.py b/tests/db/weather/conftest.py index ac50c29..686608d 100644 --- a/tests/db/weather/conftest.py +++ b/tests/db/weather/conftest.py @@ -9,9 +9,7 @@ @pytest.fixture(scope="session") -@pytest.mark.skipif( - platform.system() == "Windows", reason="Docker tests skipped on Windows" -) +@pytest.mark.docker_required def docker_postgres(): """Start a PostgreSQL container for testing.""" container_name = "test_postgres_container" @@ -61,6 +59,7 @@ def docker_postgres(): @pytest.fixture(scope="session") +@pytest.mark.docker_required def db_engine(docker_postgres): """Create a database engine connected to the Docker PostgreSQL instance.""" engine = create_engine(docker_postgres) @@ -98,6 +97,7 @@ def db_engine(docker_postgres): @pytest.fixture +@pytest.mark.docker_required def db_session(db_engine): """Create a new database session for a test.""" with Session(db_engine) as session: @@ -106,6 +106,7 @@ def db_session(db_engine): @pytest.fixture(scope="function", autouse=True) +@pytest.mark.docker_required def reset_db(db_engine): SQLModel.metadata.drop_all(db_engine) SQLModel.metadata.create_all(db_engine) diff --git a/tests/db/weather/test_proxy.py b/tests/db/weather/test_proxy.py index 9c61614..2086a74 100644 --- a/tests/db/weather/test_proxy.py +++ b/tests/db/weather/test_proxy.py @@ -1,5 +1,4 @@ import math -import platform import pytest @@ -7,9 +6,7 @@ from pypsdm.db.weather.utils import weighted_interpolation_coordinates -@pytest.mark.skipif( - platform.system() == "Windows", reason="Docker tests skipped on Windows" -) +@pytest.mark.docker_required def test_weighted_interpolation_coordinates(db_session): """Test weighted interpolation of coordinates.""" coordinates = [ diff --git a/tests/db/weather/test_weather_models.py b/tests/db/weather/test_weather_models.py index 9eed38c..803b57d 100644 --- a/tests/db/weather/test_weather_models.py +++ b/tests/db/weather/test_weather_models.py @@ -1,4 +1,3 @@ -import platform from datetime import datetime import pytest @@ -7,9 +6,7 @@ from pypsdm.db.weather.models import Coordinate, WeatherValue -@pytest.mark.skipif( - platform.system() == "Windows", reason="Docker tests skipped on Windows" -) +@pytest.mark.docker_required def test_create_coordinate(db_session): """Test creating a coordinate.""" coordinates = [] From 47410152f62d2d3fe1768b8c893e8e6d5300fed1 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 17:12:25 +0100 Subject: [PATCH 28/41] linting --- tests/db/weather/conftest.py | 1 - 1 file changed, 1 deletion(-) diff --git a/tests/db/weather/conftest.py b/tests/db/weather/conftest.py index 686608d..5406947 100644 --- a/tests/db/weather/conftest.py +++ b/tests/db/weather/conftest.py @@ -1,4 +1,3 @@ -import platform import subprocess import time From cb66fb5793444fbdcc36f432307b4278e3a92454 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 17:22:28 +0100 Subject: [PATCH 29/41] change name for testing purpose --- tests/db/weather/test_utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/db/weather/test_utils.py b/tests/db/weather/test_utils.py index e874245..01f184d 100644 --- a/tests/db/weather/test_utils.py +++ b/tests/db/weather/test_utils.py @@ -2,7 +2,7 @@ from pypsdm.db.weather.utils import weighted_interpolation_coordinates -def test_weighted_interpolation_coordinates(): +def test_weighted_interpolation_coordinates2(): target = (0, 0) coord1 = Coordinate.from_xy(id=1, x=1, y=1) From 932c141691f56b5cc7489cd9eb7d11f22ff7292a Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 17:33:10 +0100 Subject: [PATCH 30/41] add mark also to this test... --- tests/db/weather/test_utils.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/tests/db/weather/test_utils.py b/tests/db/weather/test_utils.py index 01f184d..5e0f11a 100644 --- a/tests/db/weather/test_utils.py +++ b/tests/db/weather/test_utils.py @@ -1,8 +1,8 @@ from pypsdm.db.weather.models import Coordinate from pypsdm.db.weather.utils import weighted_interpolation_coordinates - -def test_weighted_interpolation_coordinates2(): +@pytest.mark.docker_required +def test_weighted_interpolation_coordinates(): target = (0, 0) coord1 = Coordinate.from_xy(id=1, x=1, y=1) From 474f32d17192e86200ecc45ef276ed8d99d7b0fa Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Wed, 19 Mar 2025 17:34:55 +0100 Subject: [PATCH 31/41] my tolerance level is quite high --- tests/db/weather/test_utils.py | 3 +++ 1 file changed, 3 insertions(+) diff --git a/tests/db/weather/test_utils.py b/tests/db/weather/test_utils.py index 5e0f11a..0ebf55d 100644 --- a/tests/db/weather/test_utils.py +++ b/tests/db/weather/test_utils.py @@ -1,6 +1,9 @@ +import pytest + from pypsdm.db.weather.models import Coordinate from pypsdm.db.weather.utils import weighted_interpolation_coordinates + @pytest.mark.docker_required def test_weighted_interpolation_coordinates(): target = (0, 0) From 5a0e5d6ba5b8f6a32ddbfe4aebc5b565d5568b12 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Fri, 21 Mar 2025 09:20:03 +0100 Subject: [PATCH 32/41] fix container and database naming --- tests/db/weather/conftest.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/tests/db/weather/conftest.py b/tests/db/weather/conftest.py index 5406947..de37ec5 100644 --- a/tests/db/weather/conftest.py +++ b/tests/db/weather/conftest.py @@ -11,7 +11,7 @@ @pytest.mark.docker_required def docker_postgres(): """Start a PostgreSQL container for testing.""" - container_name = "test_postgres_container" + container_name = "test_weather" # Check if the container already exists check_cmd = [ @@ -40,7 +40,7 @@ def docker_postgres(): "-e", "POSTGRES_PASSWORD=postgres", "-e", - "POSTGRES_DB=test_db", + "POSTGRES_DB=test_weather", "-p", "5433:5432", "-d", @@ -51,7 +51,7 @@ def docker_postgres(): # Wait for the database to be ready time.sleep(5) - yield "postgresql://postgres:postgres@localhost:5433/test_db" + yield "postgresql://postgres:postgres@localhost:5433/test_weather" # Cleanup subprocess.run(["docker", "rm", "-f", container_name], check=True) From 2ad1c3f101076316c8c5253616f3506ceb201284 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Fri, 21 Mar 2025 16:22:06 +0100 Subject: [PATCH 33/41] rollback some changes, use Coordinate.from_hex --- tests/db/weather/test_proxy.py | 104 ++++++++++++++++----------------- tests/db/weather/test_utils.py | 3 - 2 files changed, 51 insertions(+), 56 deletions(-) diff --git a/tests/db/weather/test_proxy.py b/tests/db/weather/test_proxy.py index 2086a74..3062d1c 100644 --- a/tests/db/weather/test_proxy.py +++ b/tests/db/weather/test_proxy.py @@ -1,73 +1,71 @@ import math -import pytest - from pypsdm.db.weather.models import Coordinate from pypsdm.db.weather.utils import weighted_interpolation_coordinates -@pytest.mark.docker_required -def test_weighted_interpolation_coordinates(db_session): - """Test weighted interpolation of coordinates.""" - coordinates = [ - Coordinate.from_wkb_hex( - id=13890, - coordinate="0101000020E610000000000000008026400000000000E04A40", +def test_weighted_interpolation_coordinates(): + nearest_coordinates = [ + ( + Coordinate.from_hex( + id=13890, + wkb_hex="0101000020E610000000000000008026400000000000E04A40", + ), + 15336.967985536437, ), - Coordinate.from_wkb_hex( - id=13891, - coordinate="0101000020E610000000000000000027400000000000E04A40", + ( + Coordinate.from_hex( + id=13891, + wkb_hex="0101000020E610000000000000000027400000000000E04A40", + ), + 15741.508288878984, ), - Coordinate.from_wkb_hex( - id=14079, - coordinate="0101000020E610000000000000008026400000000000C04A40", + ( + Coordinate.from_hex( + id=14079, + wkb_hex="0101000020E610000000000000008026400000000000C04A40", + ), + 16606.405396805483, ), - Coordinate.from_wkb_hex( - id=14080, - coordinate="0101000020E610000000000000000027400000000000C04A40", + ( + Coordinate.from_hex( + id=14080, + wkb_hex="0101000020E610000000000000000027400000000000C04A40", + ), + 16982.92952636213, ), - Coordinate.from_wkb_hex( - id=13889, - coordinate="0101000020E610000000000000000026400000000000E04A40", + ( + Coordinate.from_hex( + id=13889, + wkb_hex="0101000020E610000000000000000026400000000000E04A40", + ), + 27650.80452994915, ), - Coordinate.from_wkb_hex( - id=13892, - coordinate="0101000020E610000000000000008027400000000000E04A40", + ( + Coordinate.from_hex( + id=13892, + wkb_hex="0101000020E610000000000000008027400000000000E04A40", + ), + 28324.62399357631, ), - Coordinate.from_wkb_hex( - id=14078, - coordinate="0101000020E610000000000000000026400000000000C04A40", + ( + Coordinate.from_hex( + id=14078, + wkb_hex="0101000020E610000000000000000026400000000000C04A40", + ), + 28429.952194089583, ), - Coordinate.from_wkb_hex( - id=14081, - coordinate="0101000020E610000000000000008027400000000000C04A40", + ( + Coordinate.from_hex( + id=14081, + wkb_hex="0101000020E610000000000000008027400000000000C04A40", + ), + 29089.579082292785, ), ] - db_session.add_all(coordinates) - db_session.commit() long, lat = 11.3692, 53.6315 - - nearest_coordinates = [ - (db_session.get(Coordinate, coord.id), weight) - for coord, weight in zip( - coordinates, - [ - 15336.967985536437, - 15741.508288878984, - 16606.405396805483, - 16982.92952636213, - 27650.80452994915, - 28324.62399357631, - 28429.952194089583, - 29089.579082292785, - ], - ) - ] - closest = weighted_interpolation_coordinates((long, lat), nearest_coordinates) - closest_ids = [c[0].id for c in closest] - - assert set(closest_ids) == {13890, 13891, 14079, 14080} + assert closest_ids == [13890, 13891, 14079, 14080] assert math.isclose(sum([c[1] for c in closest]), 1) diff --git a/tests/db/weather/test_utils.py b/tests/db/weather/test_utils.py index 0ebf55d..e874245 100644 --- a/tests/db/weather/test_utils.py +++ b/tests/db/weather/test_utils.py @@ -1,10 +1,7 @@ -import pytest - from pypsdm.db.weather.models import Coordinate from pypsdm.db.weather.utils import weighted_interpolation_coordinates -@pytest.mark.docker_required def test_weighted_interpolation_coordinates(): target = (0, 0) From 0e4f3eade47a6fb3e84b89a9bf02e1df450746b5 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Fri, 21 Mar 2025 16:25:33 +0100 Subject: [PATCH 34/41] update coordinates model --- pypsdm/db/weather/models.py | 104 +++++++++++++----------------------- 1 file changed, 36 insertions(+), 68 deletions(-) diff --git a/pypsdm/db/weather/models.py b/pypsdm/db/weather/models.py index 78eda84..2ad9678 100644 --- a/pypsdm/db/weather/models.py +++ b/pypsdm/db/weather/models.py @@ -1,13 +1,13 @@ +import binascii from datetime import datetime from typing import Optional -from geoalchemy2 import Geography -from geoalchemy2.elements import WKBElement -from pydantic import ConfigDict -from shapely.geometry import Point +from geoalchemy2 import Geometry, WKBElement +from shapely import Point +from shapely.geometry.base import BaseGeometry from shapely.wkb import loads -from sqlalchemy import Column, func -from sqlalchemy.orm import object_session +from shapely.wkb import dumps +from sqlalchemy import Column from sqlmodel import Field, SQLModel @@ -62,88 +62,56 @@ def name_mapping(): class Coordinate(SQLModel, table=True): """Represents a geographical coordinate.""" - - # Allow arbitrary types in model configuration - model_config = ConfigDict(arbitrary_types_allowed=True) - id: int = Field(default=None, primary_key=True) - # Use WKBElement type with the Geography column - coordinate: WKBElement = Field( - sa_column=Column( - Geography(geometry_type="POINT", srid=4326, spatial_index=False) - ) + # Use Geometry for storing WKB data (binary format) + coordinate: bytes = Field( + sa_column=Column(Geometry(geometry_type="POINT", srid=4326)) ) + def __init__(self, id: int, coordinate: bytes): + self.id = id + self.coordinate = coordinate + def __eq__(self, other): - if isinstance(other, Coordinate): - return self.coordinate == other.coordinate - return NotImplemented + return self.id == other.id if isinstance(other, Coordinate) else NotImplemented def __hash__(self): return hash(self.id) - def _is_valid_wkb_hex(self, hex_str): - """Check if the string is a valid WKB hex representation.""" - try: - # Check if it's valid hex first - if not all(c in "0123456789ABCDEFabcdef" for c in hex_str): - return False - - # Try to convert hex to bytes and validate as geometry using Shapely - wkb_bytes = bytes.fromhex(hex_str) - geom = loads(wkb_bytes) - return geom.is_valid - - except Exception as e: - print(f"Invalid WKB: {hex_str}, Error: {e}") - return False - @property - def longitude(self) -> Optional[float]: - """Extract longitude (x) from the coordinate.""" - if self.coordinate is None: - return None - if isinstance(self.coordinate, str) and self.coordinate.startswith("POINT"): - parts = self.coordinate.replace("POINT(", "").replace(")", "").split() - return float(parts[0]) - session = object_session(self) - if session is not None: - return session.scalar(func.ST_X(self.coordinate)) + def point(self) -> BaseGeometry: + if isinstance(self.coordinate, WKBElement): + wkb_str = str(self.coordinate) + coordinate = bytes.fromhex(wkb_str) + else: + coordinate = self.coordinate + return loads(coordinate) + @property - def latitude(self) -> Optional[float]: - """Extract latitude (y) from the coordinate.""" - if self.coordinate is None: - return None - if isinstance(self.coordinate, str) and self.coordinate.startswith("POINT"): - parts = self.coordinate.replace("POINT(", "").replace(")", "").split() - return float(parts[1]) - session = object_session(self) - if session is not None: - return session.scalar(func.ST_Y(self.coordinate)) + def latitude(self) -> float: + return self.point.y @property def y(self) -> float: - return self.latitude + return self.point.y @property - def x(self) -> float: - return self.longitude + def longitude(self) -> float: + return self.point.x @property - def point(self) -> Point: - """Return Shapely Point object.""" - return Point(self.longitude, self.latitude) + def x(self) -> float: + return self.point.x @staticmethod - def from_xy(id: int, x: float, y: float) -> "Coordinate": - """Create a Coordinate object from x (longitude) and y (latitude) values.""" - wkt = f"POINT({x} {y})" - return Coordinate(id=id, coordinate=wkt) + def from_xy(id: int, x: float, y: float) -> 'Coordinate': + point = Point(x, y) + wkb_data = dumps(point) + return Coordinate(id=id, coordinate=wkb_data) @staticmethod - def from_wkb_hex(id: int, coordinate: str) -> "Coordinate": - wkb_bytes = bytes.fromhex(coordinate) - geom = loads(wkb_bytes) - return Coordinate.from_xy(id=id, x=geom.x, y=geom.y) + def from_hex(id: int, wkb_hex: str) -> 'Coordinate': + bytes = binascii.unhexlify(wkb_hex) + return Coordinate(id=id, coordinate=bytes) \ No newline at end of file From 710f642d0550d6e038d9f71d01929710d7b9e977 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Fri, 21 Mar 2025 16:25:50 +0100 Subject: [PATCH 35/41] poetry --- poetry.lock | 30 +++++++++++++++--------------- 1 file changed, 15 insertions(+), 15 deletions(-) diff --git a/poetry.lock b/poetry.lock index bfcfa1c..2c90bef 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1045,13 +1045,13 @@ all = ["flake8 (>=7.1.1)", "mypy (>=1.11.2)", "pytest (>=8.3.2)", "ruff (>=0.6.2 [[package]] name = "iniconfig" -version = "2.0.0" +version = "2.1.0" description = "brain-dead simple config-ini parsing" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" files = [ - {file = "iniconfig-2.0.0-py3-none-any.whl", hash = "sha256:b6a85871a79d2e3b22d2d1b94ac2824226a63c6b741c88f7ae975f18b6778374"}, - {file = "iniconfig-2.0.0.tar.gz", hash = "sha256:2d91e135bf72d31a410b17c16da610a82cb55f6b0477d1a902134b24a455b8b3"}, + {file = "iniconfig-2.1.0-py3-none-any.whl", hash = "sha256:9deba5723312380e77435581c6bf4935c94cbfab9b1ed33ef8d238ea168eb760"}, + {file = "iniconfig-2.1.0.tar.gz", hash = "sha256:3abbd2e30b36733fee78f9c7f7308f2d0050e88f0087fd25c2645f63c773e1c7"}, ] [[package]] @@ -2407,19 +2407,19 @@ xmp = ["defusedxml"] [[package]] name = "platformdirs" -version = "4.3.6" +version = "4.3.7" description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`." optional = false -python-versions = ">=3.8" +python-versions = ">=3.9" files = [ - {file = "platformdirs-4.3.6-py3-none-any.whl", hash = "sha256:73e575e1408ab8103900836b97580d5307456908a03e92031bab39e4554cc3fb"}, - {file = "platformdirs-4.3.6.tar.gz", hash = "sha256:357fb2acbc885b0419afd3ce3ed34564c13c9b95c89360cd9563f73aa5e2b907"}, + {file = "platformdirs-4.3.7-py3-none-any.whl", hash = "sha256:a03875334331946f13c549dbd8f4bac7a13a50a895a0eb1e8c6a8ace80d40a94"}, + {file = "platformdirs-4.3.7.tar.gz", hash = "sha256:eb437d586b6a0986388f0d6f74aa0cde27b48d0e3d66843640bfb6bdcdb6e351"}, ] [package.extras] -docs = ["furo (>=2024.8.6)", "proselint (>=0.14)", "sphinx (>=8.0.2)", "sphinx-autodoc-typehints (>=2.4)"] -test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=8.3.2)", "pytest-cov (>=5)", "pytest-mock (>=3.14)"] -type = ["mypy (>=1.11.2)"] +docs = ["furo (>=2024.8.6)", "proselint (>=0.14)", "sphinx (>=8.1.3)", "sphinx-autodoc-typehints (>=3)"] +test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=8.3.4)", "pytest-cov (>=6)", "pytest-mock (>=3.14)"] +type = ["mypy (>=1.14.1)"] [[package]] name = "plotly" @@ -3386,18 +3386,18 @@ win32 = ["pywin32"] [[package]] name = "setuptools" -version = "76.1.0" +version = "77.0.3" description = "Easily download, build, install, upgrade, and uninstall Python packages" optional = false python-versions = ">=3.9" files = [ - {file = "setuptools-76.1.0-py3-none-any.whl", hash = "sha256:34750dcb17d046929f545dec9b8349fe42bf4ba13ddffee78428aec422dbfb73"}, - {file = "setuptools-76.1.0.tar.gz", hash = "sha256:4959b9ad482ada2ba2320c8f1a8d8481d4d8d668908a7a1b84d987375cd7f5bd"}, + {file = "setuptools-77.0.3-py3-none-any.whl", hash = "sha256:67122e78221da5cf550ddd04cf8742c8fe12094483749a792d56cd669d6cf58c"}, + {file = "setuptools-77.0.3.tar.gz", hash = "sha256:583b361c8da8de57403743e756609670de6fb2345920e36dc5c2d914c319c945"}, ] [package.extras] check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)", "ruff (>=0.8.0)"] -core = ["importlib_metadata (>=6)", "jaraco.collections", "jaraco.functools (>=4)", "jaraco.text (>=3.7)", "more_itertools", "more_itertools (>=8.8)", "packaging", "packaging (>=24.2)", "platformdirs (>=4.2.2)", "tomli (>=2.0.1)", "wheel (>=0.43.0)"] +core = ["importlib_metadata (>=6)", "jaraco.functools (>=4)", "jaraco.text (>=3.7)", "more_itertools", "more_itertools (>=8.8)", "packaging (>=24.2)", "platformdirs (>=4.2.2)", "tomli (>=2.0.1)", "wheel (>=0.43.0)"] cover = ["pytest-cov"] doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "pyproject-hooks (!=1.1)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier", "towncrier (<24.7)"] enabler = ["pytest-enabler (>=2.2)"] From b800f6521951174104a9292fd201afbc87124169 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Fri, 21 Mar 2025 16:26:02 +0100 Subject: [PATCH 36/41] adapt test for coordinates --- tests/db/weather/test_weather_models.py | 35 +++++++++++++++++-------- 1 file changed, 24 insertions(+), 11 deletions(-) diff --git a/tests/db/weather/test_weather_models.py b/tests/db/weather/test_weather_models.py index 803b57d..d6b9574 100644 --- a/tests/db/weather/test_weather_models.py +++ b/tests/db/weather/test_weather_models.py @@ -1,42 +1,56 @@ from datetime import datetime import pytest -from sqlmodel import select +from sqlalchemy import text, select -from pypsdm.db.weather.models import Coordinate, WeatherValue +from pypsdm.db.weather.models import WeatherValue, Coordinate @pytest.mark.docker_required def test_create_coordinate(db_session): """Test creating a coordinate.""" coordinates = [] - coord_from_str = Coordinate(id=1, coordinate="POINT(8.645 50.123)") - coord_from_xy = Coordinate.from_xy(2, 7.46, 51.5) - coordinates: list[Coordinate] = coordinates + [coord_from_str, coord_from_xy] - db_session.add_all(coordinates) + coord_1 = Coordinate.from_xy(1, 8.645, 50.123) + coord_2 = Coordinate.from_xy(2, 7.46, 51.5) + coordinates: list[Coordinate] = coordinates + [coord_1, coord_2] + + query = text(""" + INSERT INTO coordinate (id, coordinate) + VALUES (:id, ST_SetSRID(ST_GeomFromWKB(:geom), 4326)); + """) + + for coord in coordinates: + db_session.execute(query, {'id': coord.id, 'geom': coord.coordinate}) db_session.commit() - first_coordinate = db_session.get(Coordinate, 1) + first_coordinate: Coordinate = db_session.get(Coordinate, 1) second_coordinate = db_session.get(Coordinate, 2) missing_coordinate = db_session.get(Coordinate, 3) + assert first_coordinate is not None assert first_coordinate.longitude == 8.645 assert first_coordinate.latitude == 50.123 + assert second_coordinate is not None assert second_coordinate.x == 7.46 assert second_coordinate.y == 51.5 + assert missing_coordinate is None @pytest.mark.docker_required def test_create_weather_value(db_session): """Test creating a weather value.""" - # First create a coordinate berlin = Coordinate.from_xy(id=1, x=13.405, y=52.52) - db_session.add(berlin) + + query = text(""" + INSERT INTO coordinate (id, coordinate) + VALUES (:id, ST_SetSRID(ST_GeomFromWKB(:geom), 4326)); + """) + + db_session.execute(query, {'id': berlin.id, 'geom': berlin.coordinate}) db_session.commit() - # Create a weather value now = datetime.now() weather = WeatherValue( time=now, @@ -50,7 +64,6 @@ def test_create_weather_value(db_session): db_session.add(weather) db_session.commit() - # Retrieve it retrieved = db_session.exec( select(WeatherValue).where( WeatherValue.time == now, WeatherValue.coordinate_id == berlin.id From 8dec2bcb2f6308cf0901a4a63b121bf94b6e8858 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Fri, 21 Mar 2025 16:26:48 +0100 Subject: [PATCH 37/41] fmt --- pypsdm/db/weather/models.py | 11 +++++------ tests/db/weather/test_weather_models.py | 20 ++++++++++++-------- 2 files changed, 17 insertions(+), 14 deletions(-) diff --git a/pypsdm/db/weather/models.py b/pypsdm/db/weather/models.py index 2ad9678..ac9c83e 100644 --- a/pypsdm/db/weather/models.py +++ b/pypsdm/db/weather/models.py @@ -5,8 +5,7 @@ from geoalchemy2 import Geometry, WKBElement from shapely import Point from shapely.geometry.base import BaseGeometry -from shapely.wkb import loads -from shapely.wkb import dumps +from shapely.wkb import dumps, loads from sqlalchemy import Column from sqlmodel import Field, SQLModel @@ -62,6 +61,7 @@ def name_mapping(): class Coordinate(SQLModel, table=True): """Represents a geographical coordinate.""" + id: int = Field(default=None, primary_key=True) # Use Geometry for storing WKB data (binary format) @@ -88,7 +88,6 @@ def point(self) -> BaseGeometry: coordinate = self.coordinate return loads(coordinate) - @property def latitude(self) -> float: return self.point.y @@ -106,12 +105,12 @@ def x(self) -> float: return self.point.x @staticmethod - def from_xy(id: int, x: float, y: float) -> 'Coordinate': + def from_xy(id: int, x: float, y: float) -> "Coordinate": point = Point(x, y) wkb_data = dumps(point) return Coordinate(id=id, coordinate=wkb_data) @staticmethod - def from_hex(id: int, wkb_hex: str) -> 'Coordinate': + def from_hex(id: int, wkb_hex: str) -> "Coordinate": bytes = binascii.unhexlify(wkb_hex) - return Coordinate(id=id, coordinate=bytes) \ No newline at end of file + return Coordinate(id=id, coordinate=bytes) diff --git a/tests/db/weather/test_weather_models.py b/tests/db/weather/test_weather_models.py index d6b9574..79b27cf 100644 --- a/tests/db/weather/test_weather_models.py +++ b/tests/db/weather/test_weather_models.py @@ -1,9 +1,9 @@ from datetime import datetime import pytest -from sqlalchemy import text, select +from sqlalchemy import select, text -from pypsdm.db.weather.models import WeatherValue, Coordinate +from pypsdm.db.weather.models import Coordinate, WeatherValue @pytest.mark.docker_required @@ -14,13 +14,15 @@ def test_create_coordinate(db_session): coord_2 = Coordinate.from_xy(2, 7.46, 51.5) coordinates: list[Coordinate] = coordinates + [coord_1, coord_2] - query = text(""" + query = text( + """ INSERT INTO coordinate (id, coordinate) VALUES (:id, ST_SetSRID(ST_GeomFromWKB(:geom), 4326)); - """) + """ + ) for coord in coordinates: - db_session.execute(query, {'id': coord.id, 'geom': coord.coordinate}) + db_session.execute(query, {"id": coord.id, "geom": coord.coordinate}) db_session.commit() first_coordinate: Coordinate = db_session.get(Coordinate, 1) @@ -43,12 +45,14 @@ def test_create_weather_value(db_session): """Test creating a weather value.""" berlin = Coordinate.from_xy(id=1, x=13.405, y=52.52) - query = text(""" + query = text( + """ INSERT INTO coordinate (id, coordinate) VALUES (:id, ST_SetSRID(ST_GeomFromWKB(:geom), 4326)); - """) + """ + ) - db_session.execute(query, {'id': berlin.id, 'geom': berlin.coordinate}) + db_session.execute(query, {"id": berlin.id, "geom": berlin.coordinate}) db_session.commit() now = datetime.now() From 9de5a8f499d1c60ea893bc5ed1ea5c8b59aa9200 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Mon, 24 Mar 2025 12:26:37 +0100 Subject: [PATCH 38/41] fix sql database creation --- pypsdm/db/weather/models.py | 16 +++++----- tests/db/weather/conftest.py | 6 ++-- tests/db/weather/test_weather_models.py | 39 +++++++------------------ 3 files changed, 21 insertions(+), 40 deletions(-) diff --git a/pypsdm/db/weather/models.py b/pypsdm/db/weather/models.py index ac9c83e..2b2d69f 100644 --- a/pypsdm/db/weather/models.py +++ b/pypsdm/db/weather/models.py @@ -1,6 +1,6 @@ import binascii from datetime import datetime -from typing import Optional +from typing import Any, ClassVar, Dict from geoalchemy2 import Geometry, WKBElement from shapely import Point @@ -16,9 +16,7 @@ class WeatherValue(SQLModel, table=True): """ time: datetime = Field(primary_key=True) - coordinate_id: Optional[int] = Field( - primary_key=True, default=None, foreign_key="coordinate.id" - ) + coordinate_id: int = Field(primary_key=True, foreign_key="coordinate.id") aswdifd_s: float = Field() aswdir_s: float = Field() t2m: float = Field() @@ -62,14 +60,18 @@ def name_mapping(): class Coordinate(SQLModel, table=True): """Represents a geographical coordinate.""" + model_config: ClassVar[Dict[str, Any]] = {"arbitrary_types_allowed": True} + id: int = Field(default=None, primary_key=True) # Use Geometry for storing WKB data (binary format) - coordinate: bytes = Field( - sa_column=Column(Geometry(geometry_type="POINT", srid=4326)) + coordinate: WKBElement = Field( + sa_column=Column( + Geometry(geometry_type="POINT", srid=4326, from_text="ST_GeomFromWKB") + ) ) - def __init__(self, id: int, coordinate: bytes): + def __init__(self, id: int, coordinate: Geometry): self.id = id self.coordinate = coordinate diff --git a/tests/db/weather/conftest.py b/tests/db/weather/conftest.py index de37ec5..92e33b0 100644 --- a/tests/db/weather/conftest.py +++ b/tests/db/weather/conftest.py @@ -74,7 +74,7 @@ def db_engine(docker_postgres): conn.execute(text("CREATE EXTENSION IF NOT EXISTS postgis;")) conn.commit() - # If we get here, connection was successful + SQLModel.metadata.create_all(engine) break except sqlalchemy.exc.OperationalError as e: @@ -89,9 +89,6 @@ def db_engine(docker_postgres): f"Failed to connect after {max_retries} attempts" ) from e - # Create tables - SQLModel.metadata.create_all(engine) - return engine @@ -107,5 +104,6 @@ def db_session(db_engine): @pytest.fixture(scope="function", autouse=True) @pytest.mark.docker_required def reset_db(db_engine): + """Drop and recreate all tables before each test.""" SQLModel.metadata.drop_all(db_engine) SQLModel.metadata.create_all(db_engine) diff --git a/tests/db/weather/test_weather_models.py b/tests/db/weather/test_weather_models.py index 79b27cf..2cbadcb 100644 --- a/tests/db/weather/test_weather_models.py +++ b/tests/db/weather/test_weather_models.py @@ -1,7 +1,6 @@ from datetime import datetime import pytest -from sqlalchemy import select, text from pypsdm.db.weather.models import Coordinate, WeatherValue @@ -14,15 +13,8 @@ def test_create_coordinate(db_session): coord_2 = Coordinate.from_xy(2, 7.46, 51.5) coordinates: list[Coordinate] = coordinates + [coord_1, coord_2] - query = text( - """ - INSERT INTO coordinate (id, coordinate) - VALUES (:id, ST_SetSRID(ST_GeomFromWKB(:geom), 4326)); - """ - ) - for coord in coordinates: - db_session.execute(query, {"id": coord.id, "geom": coord.coordinate}) + db_session.add(coord) db_session.commit() first_coordinate: Coordinate = db_session.get(Coordinate, 1) @@ -43,16 +35,9 @@ def test_create_coordinate(db_session): @pytest.mark.docker_required def test_create_weather_value(db_session): """Test creating a weather value.""" - berlin = Coordinate.from_xy(id=1, x=13.405, y=52.52) - - query = text( - """ - INSERT INTO coordinate (id, coordinate) - VALUES (:id, ST_SetSRID(ST_GeomFromWKB(:geom), 4326)); - """ - ) + berlin = Coordinate.from_xy(id=4, x=13.405, y=52.52) - db_session.execute(query, {"id": berlin.id, "geom": berlin.coordinate}) + db_session.add(berlin) db_session.commit() now = datetime.now() @@ -61,21 +46,17 @@ def test_create_weather_value(db_session): coordinate_id=berlin.id, aswdifd_s=210.5, aswdir_s=620.3, - t2m=293.15, # 20°C in Kelvin + t2m=293.15, u131m=5.5, v131m=2.2, ) db_session.add(weather) db_session.commit() - retrieved = db_session.exec( - select(WeatherValue).where( - WeatherValue.time == now, WeatherValue.coordinate_id == berlin.id - ) - ).first() + weather_value = db_session.get(WeatherValue, (weather.time, weather.coordinate_id)) - assert retrieved is not None - assert retrieved.coordinate_id == berlin.id - assert abs(retrieved.temperature - 20.0) < 0.1 # t2m - 273.15 - assert retrieved.diffuse_irradiance == 210.5 - assert retrieved.direct_irradiance == 620.3 + assert weather_value is not None + assert weather_value.coordinate_id == berlin.id + assert abs(weather_value.temperature - 20.0) < 0.1 + assert weather_value.diffuse_irradiance == 210.5 + assert weather_value.direct_irradiance == 620.3 From ddbae39b2b9eb8b4b4d9eac94062cf1a14ec93f3 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Mon, 24 Mar 2025 12:34:12 +0100 Subject: [PATCH 39/41] add pytest.mark --- tests/db/weather/test_proxy.py | 3 +++ 1 file changed, 3 insertions(+) diff --git a/tests/db/weather/test_proxy.py b/tests/db/weather/test_proxy.py index 3062d1c..17364f3 100644 --- a/tests/db/weather/test_proxy.py +++ b/tests/db/weather/test_proxy.py @@ -1,9 +1,12 @@ import math +import pytest + from pypsdm.db.weather.models import Coordinate from pypsdm.db.weather.utils import weighted_interpolation_coordinates +@pytest.mark.docker_required def test_weighted_interpolation_coordinates(): nearest_coordinates = [ ( From c4226dc6706afd5768449259dd2a47e2afaa4efa Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Mon, 24 Mar 2025 12:39:15 +0100 Subject: [PATCH 40/41] the other one of test_weighted_interpolation_coordinates --- tests/db/weather/test_proxy.py | 3 --- tests/db/weather/test_utils.py | 3 +++ 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/tests/db/weather/test_proxy.py b/tests/db/weather/test_proxy.py index 17364f3..3062d1c 100644 --- a/tests/db/weather/test_proxy.py +++ b/tests/db/weather/test_proxy.py @@ -1,12 +1,9 @@ import math -import pytest - from pypsdm.db.weather.models import Coordinate from pypsdm.db.weather.utils import weighted_interpolation_coordinates -@pytest.mark.docker_required def test_weighted_interpolation_coordinates(): nearest_coordinates = [ ( diff --git a/tests/db/weather/test_utils.py b/tests/db/weather/test_utils.py index e874245..0ebf55d 100644 --- a/tests/db/weather/test_utils.py +++ b/tests/db/weather/test_utils.py @@ -1,7 +1,10 @@ +import pytest + from pypsdm.db.weather.models import Coordinate from pypsdm.db.weather.utils import weighted_interpolation_coordinates +@pytest.mark.docker_required def test_weighted_interpolation_coordinates(): target = (0, 0) From b25b1dc279286798d7eb8234b7f36ad0b692b7f1 Mon Sep 17 00:00:00 2001 From: danielfeismann Date: Mon, 24 Mar 2025 12:43:51 +0100 Subject: [PATCH 41/41] pytest.mark necessary for both tests --- tests/db/weather/test_proxy.py | 3 +++ 1 file changed, 3 insertions(+) diff --git a/tests/db/weather/test_proxy.py b/tests/db/weather/test_proxy.py index 3062d1c..17364f3 100644 --- a/tests/db/weather/test_proxy.py +++ b/tests/db/weather/test_proxy.py @@ -1,9 +1,12 @@ import math +import pytest + from pypsdm.db.weather.models import Coordinate from pypsdm.db.weather.utils import weighted_interpolation_coordinates +@pytest.mark.docker_required def test_weighted_interpolation_coordinates(): nearest_coordinates = [ (