diff --git a/R/standardErrorOfMeasurement.R b/R/standardErrorOfMeasurement.R index ec4fe4df..3f371d0c 100644 --- a/R/standardErrorOfMeasurement.R +++ b/R/standardErrorOfMeasurement.R @@ -77,7 +77,7 @@ standardErrorOfMeasurement <- function(jaspResults, dataset, options) { exitAnalysisIfErrors = TRUE) if (options[["lord2"]] && options[["lord2NumberOfSplits"]] == "") { - .quitAnalysis(gettext("For the Lord's compound method, the test could not be split in equally sized parts with more than 1 item per part. Consider adding or removing items.")) + .quitAnalysis(gettext("For the Lord generalized method, the test could not be split in equally sized parts with more than 1 item per part. Consider adding or removing items.")) } } @@ -128,7 +128,7 @@ standardErrorOfMeasurement <- function(jaspResults, dataset, options) { # at least one method is selected for (i in 1:length(selected)) { if (is.na(selected[[i]][["name"]])) { - .quitAnalysis(gettext("The Lord, Keats, and Lord's compound method are only available for binary data.")) + .quitAnalysis(gettext("The Lord, Keats, and Lord generalized method are only available for binary data.")) } if (is.null(jaspResults[["semMainContainer"]][[paste0(method[i], "State")]])) { out <- eval(parse(text = selected[[i]][["funString"]])) @@ -485,7 +485,7 @@ standardErrorOfMeasurement <- function(jaspResults, dataset, options) { pl <- ggplot2::ggplot(dat) + ggplot2::geom_point(ggplot2::aes(x = score, y = tscore), size = 2.5) + ggplot2::geom_errorbar(ggplot2::aes(x = score, ymin = lower, ymax = upper), width = 0.5) + - ggplot2::labs(x = gettext("Sum Score"), y = gettext("True Score")) + ggplot2::labs(x = gettext("Sum Score"), y = gettext("True Score Estimate")) } else { dat <- as.data.frame(ciData) colnames(dat) <- c("score", "lower", "upper") @@ -493,7 +493,7 @@ standardErrorOfMeasurement <- function(jaspResults, dataset, options) { pl <- ggplot2::ggplot(dat) + ggplot2::geom_ribbon(ggplot2::aes(x = score, ymin = lower, ymax = upper), fill = "grey80") + ggplot2::geom_line(ggplot2::aes(x = score, y = tscore)) + - ggplot2::labs(x = gettext("Sum Score"), y = gettext("True Score")) + ggplot2::labs(x = gettext("Sum Score"), y = gettext("True Score Estimate")) } if (!is.na(cutoff)) { @@ -539,8 +539,19 @@ standardErrorOfMeasurement <- function(jaspResults, dataset, options) { out <- .semPrepareOutMatrix(ncol(X), nc, scoresObj) fun <- function(partSUMS, ind, cc) { K <- ncol(partSUMS) - mean_diff <- partSUMS[ind, ] - rowMeans(partSUMS[ind, ]) - matrix(colMeans(partSUMS[ind, ]), length(ind), K, TRUE) + mean(partSUMS[ind, ]) - ret <- sqrt(d * sum(rowSums(mean_diff^2) / (K - 1)) / length(ind)) + # mean_diff <- partSUMS[ind, ] - rowMeans(partSUMS[ind, ]) - matrix(colMeans(partSUMS[ind, ]), length(ind), K, TRUE) + mean(partSUMS[ind, ]) + # ret <- sqrt(d * sum(rowSums(mean_diff^2) / (K - 1)) / length(ind)) + + col_means <- colMeans(partSUMS) # Global marginal means (X_j) + grand_mean <- mean(col_means) # Global grand mean (M) + row_means <- rowMeans(partSUMS[ind, ]) # Person means (X_i) + + # Construct Feldt's deviation term + mean_diff <- partSUMS[ind, ] - + matrix(row_means, length(ind), K, byrow = FALSE) - + matrix(col_means - grand_mean, length(ind), K, byrow = TRUE) + + ret <- sqrt( d * sum(mean_diff^2) / ((K - 1) * length(ind)) ) return(ret) } out <- .semComputeWithCaseMin(out, S, caseMin, partSUMS, fun) @@ -557,9 +568,7 @@ standardErrorOfMeasurement <- function(jaspResults, dataset, options) { out <- .semPrepareOutMatrix(ncol(X), nc, scoresObj) scores <- out[, 1] - rawDiffK <- d * - rowSums((partSUMS - matrix(colMeans(partSUMS), N, K, TRUE) - rowMeans(partSUMS) + mean(partSUMS))^2) / - (K - 1) + rawDiffK <- d * rowSums((partSUMS - matrix(colMeans(partSUMS), N, K, TRUE) - rowMeans(partSUMS) + mean(partSUMS))^2) / (K - 1) betaK <- coef(lm(rawDiffK ~ poly(S, n_poly, raw = TRUE))) scrs <- sqrt(betaK[1] + rowSums(matrix(betaK[-1], length(scores), n_poly, TRUE) * poly(scores, n_poly, raw = TRUE))) out[, 2] <- scrs @@ -882,7 +891,7 @@ standardErrorOfMeasurement <- function(jaspResults, dataset, options) { funString = NA, dependencies = NA)), lord2 = switch(as.character(nc), - "2" = list(name = "Lord's compound", + "2" = list(name = "Lord generalized", funString = ".semLord2(dataset, as.numeric(options$lord2NumberOfSplits), scrs, options$minimumGroupSize)", dependencies = c("lord2", "lord2NumberOfSplits", "minimumGroupSize")), list(name = NA, diff --git a/R/unidimensionalReliabilityBayesian.R b/R/unidimensionalReliabilityBayesian.R index 7a5dd26f..75be04b0 100644 --- a/R/unidimensionalReliabilityBayesian.R +++ b/R/unidimensionalReliabilityBayesian.R @@ -75,13 +75,13 @@ unidimensionalReliabilityBayesian <- function(jaspResults, dataset, options) { itemDroppedSelectedItem = unlist(options[c("itemDeletedOmega", "itemDeletedAlpha", "itemDeletedLambda2", "itemDeletedSplithalf")]), namesEstimators = list( - tables = c("Coefficient \u03C9", "Coefficient \u03B1", "Guttman's \u03BB2", "Split-half coefficient", + tables = c("McDonald's \u03C9", "Cronbach's \u03B1", "Guttman's \u03BB2", "Split-half coefficient", "Average interitem correlation", "Mean", "Variance", "SD"), - tables_item = c("Coefficient \u03C9", "Coefficient \u03B1", "Guttman's \u03BB2", gettext("Split-half coefficient"), + tables_item = c("McDonald's \u03C9", "Cronbach's \u03B1", "Guttman's \u03BB2", gettext("Split-half coefficient"), gettext("Item-rest correlation"), gettext("Mean"), gettext("Variance"), gettext("SD")), - coefficients = c("Coefficient \u03C9", "Coefficient \u03B1", "Guttman's \u03BB2", gettext("Split-half coefficient"), + coefficients = c("McDonald's \u03C9", "Cronbach's \u03B1", "Guttman's \u03BB2", gettext("Split-half coefficient"), gettext("Item-rest correlation")), - plots = list(expression("Coefficient"~omega), expression("Cronbach\'s"~alpha), expression("Guttman's"~lambda[2]), + plots = list(expression("McDonald\'s"~omega), expression("Cronbach\'s"~alpha), expression("Guttman\'s"~lambda[2]), gettext("Split-half coefficient")), plotsNoGreek = c("omega", "alpha", "lambda2", "splithalf") ) diff --git a/R/unidimensionalReliabilityFrequentist.R b/R/unidimensionalReliabilityFrequentist.R index fb731ce4..5727e6cc 100644 --- a/R/unidimensionalReliabilityFrequentist.R +++ b/R/unidimensionalReliabilityFrequentist.R @@ -2,6 +2,7 @@ #' @export unidimensionalReliabilityFrequentist <- function(jaspResults, dataset, options) { + # check for listwise deletion datasetOld <- dataset dataset <- .handleData(datasetOld, options) @@ -54,11 +55,11 @@ unidimensionalReliabilityFrequentist <- function(jaspResults, dataset, options) itemDroppedSelected = unlist(options[c("itemDeletedOmega", "itemDeletedAlpha", "itemDeletedLambda2", "itemDeletedSplithalf", "itemRestCorrelation", "itemMean", "itemVar", "itemSd")]), namesEstimators = list( - tables = c("Coefficient \u03C9", "Coefficient \u03B1", "Guttman's \u03BB2", gettext("Split-half coefficient"), + tables = c("McDonald's \u03C9", "Cronbach's \u03B1", "Guttman's \u03BB2", gettext("Split-half coefficient"), gettext("Average interitem correlation"), gettext("Mean"), gettext("Variance"), gettext("SD")), - tables_item = c("Coefficient \u03C9", "Coefficient \u03B1", "Guttman's \u03BB2", gettext("Split-half coefficient"), + tables_item = c("McDonald's \u03C9", "Cronbach's \u03B1", "Guttman's \u03BB2", gettext("Split-half coefficient"), gettext("Item-rest correlation"), gettext("Mean"), gettext("Variance"), gettext("SD")), - coefficientsDeleted = c("Coefficient \u03C9", "Coefficient \u03B1", "Guttman's \u03BB2", gettext("Split-half coefficient"))) + coefficientsDeleted = c("McDonald's \u03C9", "Cronbach's \u03B1", "Guttman's \u03BB2", gettext("Split-half coefficient"))) ) return(derivedOptions) @@ -952,8 +953,8 @@ unidimensionalReliabilityFrequentist <- function(jaspResults, dataset, options) out[["conf"]][["scaleSplithalf"]] <- quantile(samp, probs = c((1 - ciValue) / 2, 1 - (1 - ciValue) / 2), na.rm = TRUE) out[["se"]][["scaleSplithalf"]] <- sd(samp, na.rm = TRUE) } else { # interval analytic - partSums1 <- rowSums(dtUse[, splits[[1]]]) - partSums2 <- rowSums(dtUse[, splits[[2]]]) + partSums1 <- rowSums(dtUse[, splits[[1]], drop = FALSE]) + partSums2 <- rowSums(dtUse[, splits[[2]], drop = FALSE]) out[["se"]][["scaleSplithalf"]] <- .seSplithalf(partSums1, partSums2, model[["use.cases"]]) out[["conf"]][["scaleSplithalf"]] <- out[["est"]][["scaleSplithalf"]] + c(-1, 1) * out[["se"]][["scaleSplithalf"]] * qnorm(1 - (1 - ciValue) / 2) @@ -1168,31 +1169,33 @@ unidimensionalReliabilityFrequentist <- function(jaspResults, dataset, options) out[["est"]][["itemDeletedSplithalf"]] <- c(NA, NA) out[["lower"]][["itemDeletedSplithalf"]] <- c(NA, NA) out[["upper"]][["itemDeletedSplithalf"]] <- c(NA, NA) - } - - for (i in seq_len(ncol(dtUse))) { - dtCut <- dtUse[, -i, drop = FALSE] - nit <- ncol(dtCut) - splits <- split(seq_len(nit), 1:2) - est <- .splithalfData(dtCut, splits = splits, useCase = model[["use.cases"]]) - out[["est"]][["itemDeletedSplithalf"]][i] <- est + } else { + for (i in seq_len(ncol(dtUse))) { + dtCut <- dtUse[, -i, drop = FALSE] + nit <- ncol(dtCut) + splits <- split(seq_len(nit), 1:2) + est <- .splithalfData(dtCut, splits = splits, useCase = model[["use.cases"]]) + out[["est"]][["itemDeletedSplithalf"]][i] <- est - if (options[["intervalMethod"]] == "analytic") { + if (options[["intervalMethod"]] == "analytic") { - partSums1 <- rowSums(dtCut[, splits[[1]]]) - partSums2 <- rowSums(dtCut[, splits[[2]]]) + partSums1 <- rowSums(dtCut[, splits[[1]]]) + partSums2 <- rowSums(dtCut[, splits[[2]]]) - se <- .seSplithalf(partSums1, partSums2, model[["use.cases"]]) - conf <- est + c(-1, 1) * se * qnorm(1 - (1 - ciValue) / 2) - out[["lower"]][["itemDeletedSplithalf"]][i] <- conf[1] - out[["upper"]][["itemDeletedSplithalf"]][i] <- conf[2] - } else { - itemSamp <- model[["itemDeletedSplithalf"]][["itemSamp"]] - conf <- quantile(itemSamp[, i], probs = c((1 - ciValue) / 2, 1 - (1 - ciValue) / 2), na.rm = TRUE) - out[["lower"]][["itemDeletedSplithalf"]][i] <- conf[1] - out[["upper"]][["itemDeletedSplithalf"]][i] <- conf[2] + se <- .seSplithalf(partSums1, partSums2, model[["use.cases"]]) + conf <- est + c(-1, 1) * se * qnorm(1 - (1 - ciValue) / 2) + out[["lower"]][["itemDeletedSplithalf"]][i] <- conf[1] + out[["upper"]][["itemDeletedSplithalf"]][i] <- conf[2] + } else { + itemSamp <- model[["itemDeletedSplithalf"]][["itemSamp"]] + conf <- quantile(itemSamp[, i], probs = c((1 - ciValue) / 2, 1 - (1 - ciValue) / 2), na.rm = TRUE) + out[["lower"]][["itemDeletedSplithalf"]][i] <- conf[1] + out[["upper"]][["itemDeletedSplithalf"]][i] <- conf[2] + } } } + + } # item-rest correlation diff --git a/inst/Description.qml b/inst/Description.qml index 804feb25..69f8d57d 100644 --- a/inst/Description.qml +++ b/inst/Description.qml @@ -16,7 +16,7 @@ Description Analysis { - title: qsTr("Unidimensional Reliability") + title: qsTr("Reliability") qml: "UnidimensionalReliabilityFrequentist.qml" func: "unidimensionalReliabilityFrequentist" } @@ -57,8 +57,8 @@ Description } Analysis { - menu: qsTr("Unidimensional Reliability") - title: qsTr("Bayesian Unidimensional Reliability") + menu: qsTr("Reliability") + title: qsTr("Bayesian Reliability") qml: "UnidimensionalReliabilityBayesian.qml" func: "unidimensionalReliabilityBayesian" } diff --git a/inst/help/standardErrorOfMeasurement.md b/inst/help/standardErrorOfMeasurement.md index 6267f8c3..d228b380 100644 --- a/inst/help/standardErrorOfMeasurement.md +++ b/inst/help/standardErrorOfMeasurement.md @@ -23,7 +23,7 @@ The Standard Error of Measurement (sem) quantifies the precision of a measuremen - Binomial methods: Based on the idea that the item scores follow a binomial distribution - Lord: Method that only requires number of correct and incorrect items - Keats: Corrects the Lord method for supposed bias and uses a reliability coefficient in the process - - Lord's compound: Essentially the Lord method for multiple test parts + - Lord generalized: Essentially the Lord method for multiple test parts - Number of splits: How many splits to apply, can only be a divisor of the number of items ### Options diff --git a/inst/help/unidimensionalReliabilityBayesian.md b/inst/help/unidimensionalReliabilityBayesian.md index 76cccc33..7d24f921 100644 --- a/inst/help/unidimensionalReliabilityBayesian.md +++ b/inst/help/unidimensionalReliabilityBayesian.md @@ -13,8 +13,8 @@ The Bayesian unidimensional reliability analysis allows the user to test the sca ### Scale Statistics - The CTT-coefficients alpha, lambda 2, and the split-half coefficient are computed from the data covariance matrix. Coefficient omega is computed from the centered data matrix. - Credible interval: default is 95% -- Coefficient omega: The same as McDonald's omega (for unidimensional data, based on the single-factor model). Note the total test variance in the denominator of the reliability equation is the model implied total variance, that is, the summed model implied covariance matrix. -- Coefficient alpha: The same as Cronbach's alpha (for binary items the coefficient equals KR20) +- McDonald's omega (for unidimensional data, based on the single-factor model). Note the total test variance in the denominator of the reliability equation is the model implied total variance, that is, the summed model implied covariance matrix. +- Cronbach's alpha (for binary items the coefficient equals KR20) - Guttman's lambda 2 - Split-half coefficient: Correlates the sum scores of two test-halves. By default the variables are split into odd and even numbered items in order or appearance in the variables window. If another split is desired the variables just need to be reordered. - Average interitem correlation diff --git a/inst/help/unidimensionalReliabilityFrequentist.md b/inst/help/unidimensionalReliabilityFrequentist.md index 94d44a02..98e3e62c 100644 --- a/inst/help/unidimensionalReliabilityFrequentist.md +++ b/inst/help/unidimensionalReliabilityFrequentist.md @@ -12,8 +12,8 @@ The frequentist unidimensional reliability analysis allows the user to test the ### Scale Statistics - Confidence interval: default is 95% -- Coefficient omega: The same as McDonald's omega (for unidimensional data, based on the single-factor model). Note the total test variance in the denominator of the reliability equation is the model implied total variance, that is, the summed model implied covariance matrix. -- Coefficient alpha: The same as Cronbach's alpha (for binary items the coefficient equals KR20) +- McDonald's omega (for unidimensional data, based on the single-factor model). Note the total test variance in the denominator of the reliability equation is the model implied total variance, that is, the summed model implied covariance matrix. +- Cronbach's alpha (for binary items the coefficient equals KR20) - Guttman's lambda 2 - Split-half coefficient: Correlates the sum scores of two test-halves. By default the variables are split into odd and even numbered items in order or appearance in the variables window. If another split is desired the variables just need to be reordered. - Average interitem correlation diff --git a/inst/qml/StandardErrorOfMeasurement.qml b/inst/qml/StandardErrorOfMeasurement.qml index e72d788f..9bae707c 100644 --- a/inst/qml/StandardErrorOfMeasurement.qml +++ b/inst/qml/StandardErrorOfMeasurement.qml @@ -37,7 +37,7 @@ Form maxLevels: 50 minNumericLevels: 2 id: variables - onCountChanged: + onCountChanged: { var newValues = [] for (var i = 2; i <= variables.count; i++) @@ -81,11 +81,11 @@ Form name: "feldt" label: qsTr("Feldt") id: feldt - DropDown + DropDown { name: "feldtNumberOfSplits" label: qsTr("Number of splits") - values: [] + values: [2, 3, 4, 5, 6, 7, 8, 9, 10] id: feldtNumberOfSplits } } @@ -94,11 +94,11 @@ Form name: "mollenkopfFeldt" label: qsTr("Mollenkopf-Feldt") id: mollenkopfFeldt - DropDown + DropDown { name: "mollenkopfFeldtNumberOfSplits" label: qsTr("Number of splits") - values: [] + values: [2, 3, 4, 5, 6, 7, 8, 9, 10] id: mollenkopfFeldtNumberOfSplits } IntegerField @@ -120,7 +120,7 @@ Form name: "anova" label: qsTr("ANOVA") } - + CheckBox { name: "irt" @@ -148,13 +148,13 @@ Form { enabled: !variables.columnsTypes.includes("ordinal") name: "lord2" - label: qsTr("Lord's compound") + label: qsTr("Lord generalized") id: lord2 - DropDown + DropDown { name: "lord2NumberOfSplits" label: qsTr("Number of splits") - values: [] + values: [2, 3, 4, 5, 6, 7, 8, 9, 10] id: lord2NumberOfSplits } } @@ -164,7 +164,7 @@ Form { title: qsTr("Options") - CheckBox + CheckBox { name: "sumScoreCiTable" label: qsTr("Sum score table") @@ -177,7 +177,7 @@ Form } } - CheckBox + CheckBox { name: "userReliability" label: qsTr("User defined reliability") @@ -186,7 +186,7 @@ Form DoubleField { name: "reliabilityValue" - label: "" + label: "" max: 1 defaultValue: .5 } @@ -195,17 +195,17 @@ Form IntegerField { name: "minimumGroupSize" - label: qsTr("Minimum number of observations per score group") + label: qsTr("Minimum number of observations per score group") min: 1 defaultValue: 20 } - CheckBox + CheckBox { name: "hideTable" label: qsTr("Hide SEM table") } - + } Section @@ -216,7 +216,7 @@ Form { name: "histogramCounts" label: qsTr("Histogram of sum score counts") - } + } CheckBox { diff --git a/inst/qml/UnidimensionalReliabilityBayesian.qml b/inst/qml/UnidimensionalReliabilityBayesian.qml index 9e582495..0d6955d0 100644 --- a/inst/qml/UnidimensionalReliabilityBayesian.qml +++ b/inst/qml/UnidimensionalReliabilityBayesian.qml @@ -54,7 +54,7 @@ Form { id: omega name: "scaleOmega" - label: qsTr("Coefficient ω") + label: qsTr("McDonald's ω") checked: true } @@ -62,7 +62,7 @@ Form { id: alpha name: "scaleAlpha"; - label: qsTr("Coefficient α"); + label: qsTr("Cronbach's α"); } CheckBox @@ -113,7 +113,7 @@ Form { id: omegaItem name: "itemDeletedOmega"; - label: qsTr("Coefficient ω (if item dropped)"); + label: qsTr("McDonald's ω (if item dropped)"); enabled: omega.checked } @@ -121,7 +121,7 @@ Form { id: alphaItem name: "itemDeletedAlpha"; - label: qsTr("Coefficient α (if item dropped)"); + label: qsTr("Cronbach's α (if item dropped)"); enabled: alpha.checked } @@ -391,7 +391,7 @@ Form } Group { - title: qsTr("Coefficient ω") + title: qsTr("McDonald's ω") RowLayout { @@ -456,7 +456,7 @@ Form Group { - title: qsTr("Coefficient ω Estimation") + title: qsTr("McDonald's ω Estimation") enabled: omega.checked CheckBox { diff --git a/inst/qml/UnidimensionalReliabilityFrequentist.qml b/inst/qml/UnidimensionalReliabilityFrequentist.qml index a4e14907..f6c70845 100644 --- a/inst/qml/UnidimensionalReliabilityFrequentist.qml +++ b/inst/qml/UnidimensionalReliabilityFrequentist.qml @@ -57,7 +57,7 @@ Form { id: omega name: "scaleOmega" - label: qsTr("Coefficient ω") + label: qsTr("McDonald's ω") checked: true } @@ -65,7 +65,7 @@ Form { id: alpha name: "scaleAlpha"; - label: qsTr("Coefficient α"); + label: qsTr("Cronbach's α"); } CheckBox @@ -116,14 +116,14 @@ Form CheckBox { name: "itemDeletedOmega"; - label: qsTr("Coefficient ω (if item dropped)"); + label: qsTr("McDonald's ω (if item dropped)"); enabled: omega.checked } CheckBox { name: "itemDeletedAlpha"; - label: qsTr("Coefficient α (if item dropped)"); + label: qsTr("Cronbach's α (if item dropped)"); enabled: alpha.checked } @@ -232,7 +232,7 @@ Form RadioButtonGroup { - title: qsTr("Coefficient ω Estimation") + title: qsTr("McDonald's ω Estimation") name: "omegaEstimationMethod" enabled: omega.checked id: omegaEst diff --git a/renv.lock b/renv.lock index defd93d1..d3ab3cfc 100644 --- a/renv.lock +++ b/renv.lock @@ -13,656 +13,2095 @@ "Package": "Bayesrel", "Version": "0.7.8", "Source": "Repository", - "Requirements": [ - "coda", - "graphics", + "Type": "Package", + "Title": "Bayesian Reliability Estimation", + "Date": "2025-03-24", + "Authors@R": "c(person(\"Julius M.\", \"Pfadt\", email = \"julius.pfadt@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0758-5502\")), person(\"Don\", \"van den Bergh\", role = c(\"aut\"), comment = c(ORCID = \"0000-0002-9838-7308\")), person(\"Joris\", \"Goosen\", role = c(\"aut\")) )", + "Description": "Functionality for reliability estimates. For 'unidimensional' tests: Coefficient alpha, 'Guttman's' lambda-2/-4/-6, the Greatest lower bound and coefficient omega_u ('unidimensional') in a Bayesian and a frequentist version. For multidimensional tests: omega_t (total) and omega_h (hierarchical). The results include confidence and credible intervals, the probability of a coefficient being larger than a cutoff, and a check for the factor models, necessary for the omega coefficients. The method for the Bayesian 'unidimensional' estimates, except for omega_u, is sampling from the posterior inverse 'Wishart' for the covariance matrix based measures (see 'Murphy', 2007, . The Bayesian omegas (u, t, and h) are obtained by 'Gibbs' sampling from the conditional posterior distributions of (1) the single factor model, (2) the second-order factor model, (3) the bi-factor model, (4) the correlated factor model ('Lee', 2007, ).", + "URL": "https://github.com/juliuspfadt/Bayesrel", + "BugReports": "https://github.com/juliuspfadt/Bayesrel/issues", + "License": "GPL-3", + "Encoding": "UTF-8", + "LazyData": "true", + "Imports": [ "LaplacesDemon", - "lavaan", "MASS", + "lavaan", + "coda", "methods", - "psych", - "R", - "Rcpp", - "RcppArmadillo", + "stats", + "graphics", "Rdpack", - "stats" - ] + "Rcpp (>= 1.0.4.6)", + "psych" + ], + "LinkingTo": [ + "Rcpp", + "RcppArmadillo" + ], + "RdMacros": "Rdpack", + "RoxygenNote": "7.3.2", + "Depends": [ + "R (>= 2.10)" + ], + "Suggests": [ + "knitr", + "rmarkdown", + "tinytest" + ], + "NeedsCompilation": "yes", + "Author": "Julius M. Pfadt [aut, cre] (), Don van den Bergh [aut] (), Joris Goosen [aut]", + "Maintainer": "Julius M. Pfadt ", + "Repository": "CRAN" }, "Deriv": { "Package": "Deriv", "Version": "4.2.0", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Symbolic Differentiation", + "Date": "2025-06-20", + "Authors@R": "c(person(given=\"Andrew\", family=\"Clausen\", role=\"aut\"), person(given=\"Serguei\", family=\"Sokol\", role=c(\"aut\", \"cre\"), email=\"sokol@insa-toulouse.fr\", comment = c(ORCID = \"0000-0002-5674-3327\")), person(given=\"Andreas\", family=\"Rappold\", role=\"ctb\", email=\"arappold@gmx.at\"))", + "Description": "R-based solution for symbolic differentiation. It admits user-defined function as well as function substitution in arguments of functions to be differentiated. Some symbolic simplification is part of the work.", + "License": "GPL (>= 3)", + "Suggests": [ + "testthat (>= 0.11.0)" + ], + "BugReports": "https://github.com/sgsokol/Deriv/issues", + "RoxygenNote": "7.3.1", + "Imports": [ "methods" - ] + ], + "Encoding": "UTF-8", + "NeedsCompilation": "no", + "Author": "Andrew Clausen [aut], Serguei Sokol [aut, cre] (ORCID: ), Andreas Rappold [ctb]", + "Maintainer": "Serguei Sokol ", + "Repository": "CRAN" }, "GPArotation": { "Package": "GPArotation", "Version": "2025.3-1", "Source": "Repository", - "Requirements": [ - "R", + "Title": "Gradient Projection Factor Rotation", + "Authors@R": "c( person(\"Coen\", \"Bernaards\", email = \"cab.gparotation@gmail.com\", role = c(\"aut\",\"cre\")), person(\"Paul\", \"Gilbert\", email = \"pgilbert.ttv9z@ncf.ca\", role = \"aut\"), person(\"Robert\", \"Jennrich\", role = \"aut\") )", + "Depends": [ + "R (>= 2.0.0)" + ], + "Description": "Gradient Projection Algorithms for Factor Rotation. For details see ?GPArotation. 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Bates [ctb], Kurt Hornik [trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial port ca 1998), David Firth [ctb] (support functions for polr)", + "Maintainer": "Brian Ripley ", + "Repository": "CRAN" }, "Matrix": { "Package": "Matrix", "Version": "1.7-4", "Source": "Repository", - "Requirements": [ - "graphics", + "VersionNote": "do also bump src/version.h, inst/include/Matrix/version.h", + "Date": "2025-08-27", + "Priority": "recommended", + "Title": "Sparse and Dense Matrix Classes and Methods", + "Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries. 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Compared to reference classes, R6 classes are simpler and lighter-weight, and they are not built on S4 classes so they do not require the methods package. 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Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. 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'Eigen' is a C++ template library for linear algebra: matrices, vectors, numerical solvers and related algorithms. It supports dense and sparse matrices on integer, floating point and complex numbers, decompositions of such matrices, and solutions of linear systems. Its performance on many algorithms is comparable with some of the best implementations based on 'Lapack' and level-3 'BLAS'. The 'RcppEigen' package includes the header files from the 'Eigen' C++ template library. Thus users do not need to install 'Eigen' itself in order to use 'RcppEigen'. Since version 3.1.1, 'Eigen' is licensed under the Mozilla Public License (version 2); earlier version were licensed under the GNU LGPL version 3 or later. 'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.", + "License": "GPL (>= 2) | file LICENSE", + "LazyLoad": "yes", + "Depends": [ + "R (>= 3.6.0)" + ], + "LinkingTo": [ + "Rcpp" + ], + "Imports": [ + "Rcpp (>= 0.11.0)", "stats", "utils" - ] + ], + "Suggests": [ + "Matrix", + "inline", + "tinytest", + "pkgKitten", + "microbenchmark" + ], + "URL": "https://github.com/RcppCore/RcppEigen, https://dirk.eddelbuettel.com/code/rcpp.eigen.html", + "BugReports": "https://github.com/RcppCore/RcppEigen/issues", + "NeedsCompilation": "yes", + "Author": "Doug Bates [aut] (), Dirk Eddelbuettel [aut, cre] (), Romain Francois [aut] (), Yixuan Qiu [aut] (), Authors of Eigen [cph] (Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS)", + "Maintainer": "Dirk Eddelbuettel ", + "Repository": "CRAN" }, "Rdpack": { "Package": "Rdpack", "Version": "2.6.4", "Source": "Repository", - "Requirements": [ - "methods", - "R", - "rbibutils", + "Type": "Package", + "Title": "Update and Manipulate Rd Documentation Objects", + "Authors@R": "c( person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"aut\", \"cre\"), email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(ORCID = \"0000-0003-2839-346X\")), person(given = \"Duncan\", family = \"Murdoch\", role = \"ctb\", email = \"murdoch.duncan@gmail.com\") )", + "Description": "Functions for manipulation of R documentation objects, including functions reprompt() and ereprompt() for updating 'Rd' documentation for functions, methods and classes; 'Rd' macros for citations and import of references from 'bibtex' files for use in 'Rd' files and 'roxygen2' comments; 'Rd' macros for evaluating and inserting snippets of 'R' code and the results of its evaluation or creating graphics on the fly; and many functions for manipulation of references and Rd files.", + "URL": "https://geobosh.github.io/Rdpack/ (doc), https://github.com/GeoBosh/Rdpack (devel)", + "BugReports": "https://github.com/GeoBosh/Rdpack/issues", + "Depends": [ + "R (>= 2.15.0)", + "methods" + ], + "Imports": [ "tools", - "utils" - ] + "utils", + "rbibutils (>= 1.3)" + ], + "Suggests": [ + "grDevices", + "testthat", + "rstudioapi", + "rprojroot", + "gbRd" + ], + "License": "GPL (>= 2)", + "LazyLoad": "yes", + "RoxygenNote": "7.1.1", + "NeedsCompilation": "no", + "Author": "Georgi N. Boshnakov [aut, cre] (), Duncan Murdoch [ctb]", + "Maintainer": "Georgi N. 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Compared to other approaches 'cpp11' strives to be safe against long jumps from the C API as well as C++ exceptions, conform to normal R function semantics and supports interaction with 'ALTREP' vectors.", + "License": "MIT + file LICENSE", + "URL": "https://cpp11.r-lib.org, https://github.com/r-lib/cpp11", + "BugReports": "https://github.com/r-lib/cpp11/issues", + "Depends": [ + "R (>= 4.0.0)" + ], + "Suggests": [ + "bench", + "brio", + "callr", + "cli", + "covr", + "decor", + "desc", + "ggplot2", + "glue", + "knitr", + "lobstr", + "mockery", + "progress", + "rmarkdown", + "scales", + "Rcpp", + "testthat (>= 3.2.0)", + "tibble", + "utils", + "vctrs", + "withr" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/Needs/cpp11/cpp_register": "brio, cli, decor, desc, glue, tibble, vctrs", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Davis Vaughan [aut, cre] (), Jim Hester [aut] (), Romain François [aut] (), Benjamin Kietzman [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Davis Vaughan ", + "Repository": "CRAN" }, "crayon": { "Package": "crayon", "Version": "1.5.3", "Source": "Repository", - "Requirements": [ + "Title": "Colored Terminal Output", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Brodie\", \"Gaslam\", , \"brodie.gaslam@yahoo.com\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "The crayon package is now superseded. Please use the 'cli' package for new projects. Colored terminal output on terminals that support 'ANSI' color and highlight codes. It also works in 'Emacs' 'ESS'. 'ANSI' color support is automatically detected. Colors and highlighting can be combined and nested. New styles can also be created easily. This package was inspired by the 'chalk' 'JavaScript' project.", + "License": "MIT + file LICENSE", + "URL": "https://r-lib.github.io/crayon/, https://github.com/r-lib/crayon", + "BugReports": "https://github.com/r-lib/crayon/issues", + "Imports": [ "grDevices", "methods", "utils" - ] + ], + "Suggests": [ + "mockery", + "rstudioapi", + "testthat", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1", + "Collate": "'aaa-rstudio-detect.R' 'aaaa-rematch2.R' 'aab-num-ansi-colors.R' 'aac-num-ansi-colors.R' 'ansi-256.R' 'ansi-palette.R' 'combine.R' 'string.R' 'utils.R' 'crayon-package.R' 'disposable.R' 'enc-utils.R' 'has_ansi.R' 'has_color.R' 'link.R' 'styles.R' 'machinery.R' 'parts.R' 'print.R' 'style-var.R' 'show.R' 'string_operations.R'", + "NeedsCompilation": "no", + "Author": "Gábor Csárdi [aut, cre], Brodie Gaslam [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" + }, + "curl": { + "Package": "curl", + "Version": "7.0.0", + "Source": "Repository", + "Type": "Package", + "Title": "A Modern and Flexible Web Client for R", + "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Posit Software, PBC\", role = \"cph\"))", + "Description": "Bindings to 'libcurl' for performing fully configurable HTTP/FTP requests where responses can be processed in memory, on disk, or streaming via the callback or connection interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the 'httr2' package which builds on this package with http specific tools and logic.", + "License": "MIT + file LICENSE", + "SystemRequirements": "libcurl (>= 7.73): libcurl-devel (rpm) or libcurl4-openssl-dev (deb)", + "URL": "https://jeroen.r-universe.dev/curl", + "BugReports": "https://github.com/jeroen/curl/issues", + "Suggests": [ + "spelling", + "testthat (>= 1.0.0)", + "knitr", + "jsonlite", + "later", + "rmarkdown", + "httpuv (>= 1.4.4)", + "webutils" + ], + "VignetteBuilder": "knitr", + "Depends": [ + "R (>= 3.0.0)" + ], + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "Language": "en-US", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Hadley Wickham [ctb], Posit Software, PBC [cph]", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" + }, + "data.table": { + "Package": "data.table", + "Version": "1.17.8", + "Source": "Repository", + "Title": "Extension of `data.frame`", + "Depends": [ + "R (>= 3.3.0)" + ], + "Imports": [ + "methods" + ], + "Suggests": [ + "bit64 (>= 4.0.0)", + "bit (>= 4.0.4)", + "R.utils", + "xts", + "zoo (>= 1.8-1)", + "yaml", + "knitr", + "markdown" + ], + "Description": "Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.", + "License": "MPL-2.0 | file LICENSE", + "URL": "https://r-datatable.com, https://Rdatatable.gitlab.io/data.table, https://github.com/Rdatatable/data.table", + "BugReports": "https://github.com/Rdatatable/data.table/issues", + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "ByteCompile": "TRUE", + "Authors@R": "c( person(\"Tyson\",\"Barrett\", role=c(\"aut\",\"cre\"), email=\"t.barrett88@gmail.com\", comment = c(ORCID=\"0000-0002-2137-1391\")), person(\"Matt\",\"Dowle\", role=\"aut\", email=\"mattjdowle@gmail.com\"), person(\"Arun\",\"Srinivasan\", role=\"aut\", email=\"asrini@pm.me\"), person(\"Jan\",\"Gorecki\", role=\"aut\"), person(\"Michael\",\"Chirico\", role=\"aut\", comment = c(ORCID=\"0000-0003-0787-087X\")), person(\"Toby\",\"Hocking\", role=\"aut\", comment = c(ORCID=\"0000-0002-3146-0865\")), person(\"Benjamin\",\"Schwendinger\",role=\"aut\", comment = c(ORCID=\"0000-0003-3315-8114\")), person(\"Ivan\", 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[aut] (ORCID: ), Toby Hocking [aut] (ORCID: ), Benjamin Schwendinger [aut] (ORCID: ), Ivan Krylov [aut] (ORCID: ), Pasha Stetsenko [ctb], Tom Short [ctb], Steve Lianoglou [ctb], Eduard Antonyan [ctb], Markus Bonsch [ctb], Hugh Parsonage [ctb], Scott Ritchie [ctb], Kun Ren [ctb], Xianying Tan [ctb], Rick Saporta [ctb], Otto Seiskari [ctb], Xianghui Dong [ctb], Michel Lang [ctb], Watal Iwasaki [ctb], Seth Wenchel [ctb], Karl Broman [ctb], Tobias Schmidt [ctb], David Arenburg [ctb], Ethan Smith [ctb], Francois Cocquemas [ctb], Matthieu Gomez [ctb], Philippe Chataignon [ctb], Nello Blaser [ctb], Dmitry Selivanov [ctb], Andrey Riabushenko [ctb], Cheng Lee [ctb], Declan Groves [ctb], Daniel Possenriede [ctb], Felipe Parages [ctb], Denes Toth [ctb], Mus Yaramaz-David [ctb], Ayappan Perumal [ctb], James Sams [ctb], Martin Morgan [ctb], Michael Quinn [ctb], @javrucebo [ctb], @marc-outins [ctb], Roy Storey [ctb], Manish Saraswat [ctb], Morgan Jacob [ctb], Michael Schubmehl [ctb], Davis Vaughan [ctb], Leonardo Silvestri [ctb], Jim Hester [ctb], Anthony Damico [ctb], Sebastian Freundt [ctb], David Simons [ctb], Elliott Sales de Andrade [ctb], Cole Miller [ctb], Jens Peder Meldgaard [ctb], Vaclav Tlapak [ctb], Kevin Ushey [ctb], Dirk Eddelbuettel [ctb], Tony Fischetti [ctb], Ofek Shilon [ctb], Vadim Khotilovich [ctb], Hadley Wickham [ctb], Bennet Becker [ctb], Kyle Haynes [ctb], Boniface Christian Kamgang [ctb], Olivier Delmarcell [ctb], Josh O'Brien [ctb], Dereck de Mezquita [ctb], Michael Czekanski [ctb], Dmitry Shemetov [ctb], Nitish Jha [ctb], Joshua Wu [ctb], Iago Giné-Vázquez [ctb], Anirban Chetia [ctb], Doris Amoakohene [ctb], Angel Feliz [ctb], Michael Young [ctb], Mark Seeto [ctb], Philippe Grosjean [ctb], Vincent Runge [ctb], Christian Wia [ctb], Elise Maigné [ctb], Vincent Rocher [ctb], Vijay Lulla [ctb], Aljaž Sluga [ctb], Bill Evans [ctb]", + "Maintainer": "Tyson Barrett ", + "Repository": "CRAN" }, "dcurver": { "Package": "dcurver", "Version": "0.9.3", "Source": "Repository", - "Requirements": [ + "Date": "2025-10-24", + "Title": "Utility Functions for Davidian Curves", + "Authors@R": "person(given = \"Ozan\", family = \"Öğreden\", role = c(\"aut\", \"cre\"), email = \"oguzhanogreden@protonmail.com\")", + "Description": "A Davidian curve defines a seminonparametric density, whose shape and flexibility can be tuned by easy to estimate parameters. Since a special case of a Davidian curve is the standard normal density, Davidian curves can be used for relaxing normality assumption in statistical applications (Zhang & Davidian, 2001) . This package provides the density function, the gradient of the loglikelihood and a random generator for Davidian curves.", + "License": "GPL-3", + "URL": "https://github.com/oguzhanogreden/dcurver", + "BugReports": "https://github.com/oguzhanogreden/dcurver/issues", + "Imports": [ + "Rcpp (>= 0.12.14)" + ], + "LinkingTo": [ "Rcpp", "RcppArmadillo" - ] + ], + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "Suggests": [ + "testthat" + ], + "Language": "en-US", + "NeedsCompilation": "yes", + "Author": "Ozan Öğreden [aut, cre]", + "Maintainer": "Ozan Öğreden ", + "Repository": "CRAN" }, "desc": { "Package": "desc", "Version": "1.4.3", "Source": "Repository", - "Requirements": [ + "Title": "Manipulate DESCRIPTION Files", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kirill\", \"Müller\", role = \"aut\"), person(\"Jim\", \"Hester\", , \"james.f.hester@gmail.com\", role = \"aut\"), person(\"Maëlle\", \"Salmon\", role = \"ctb\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Maintainer": "Gábor Csárdi ", + "Description": "Tools to read, write, create, and manipulate DESCRIPTION files. 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Allen [ctb, cph] (Original C implementation of Myers Diff Algorithm)", + "Maintainer": "Brodie Gaslam ", + "Repository": "CRAN" }, "digest": { "Package": "digest", "Version": "0.6.39", "Source": "Repository", - "Requirements": [ - "R", + "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Antoine\", \"Lucas\", role=\"ctb\", comment = c(ORCID = \"0000-0002-8059-9767\")), person(\"Jarek\", \"Tuszynski\", role=\"ctb\"), person(\"Henrik\", \"Bengtsson\", role=\"ctb\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Simon\", \"Urbanek\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2297-1732\")), person(\"Mario\", \"Frasca\", role=\"ctb\"), person(\"Bryan\", \"Lewis\", role=\"ctb\"), person(\"Murray\", \"Stokely\", role=\"ctb\"), person(\"Hannes\", \"Muehleisen\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8552-0029\")), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Jim\", \"Hester\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Wush\", \"Wu\", role=\"ctb\", comment = c(ORCID = \"0000-0001-5180-0567\")), person(\"Qiang\", \"Kou\", role=\"ctb\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Thierry\", \"Onkelinx\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")), person(\"Michel\", \"Lang\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Viliam\", \"Simko\", role=\"ctb\"), person(\"Kurt\", \"Hornik\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Radford\", \"Neal\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2473-3407\")), person(\"Kendon\", \"Bell\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9093-8312\")), person(\"Matthew\", \"de Queljoe\", role=\"ctb\"), person(\"Dmitry\", \"Selivanov\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0492-6647\")), person(\"Ion\", \"Suruceanu\", role=\"ctb\", comment = c(ORCID = \"0009-0005-6446-4909\")), person(\"Bill\", \"Denney\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5759-428X\")), person(\"Dirk\", \"Schumacher\", role=\"ctb\"), person(\"András\", \"Svraka\", role=\"ctb\", comment = c(ORCID = \"0009-0008-8480-1329\")), person(\"Sergey\", \"Fedorov\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5970-7233\")), person(\"Will\", \"Landau\", role=\"ctb\", comment = c(ORCID = \"0000-0003-1878-3253\")), person(\"Floris\", \"Vanderhaeghe\", role=\"ctb\", comment = c(ORCID = \"0000-0002-6378-6229\")), person(\"Kevin\", \"Tappe\", role=\"ctb\"), person(\"Harris\", \"McGehee\", role=\"ctb\"), person(\"Tim\", \"Mastny\", role=\"ctb\"), person(\"Aaron\", \"Peikert\", role=\"ctb\", comment = c(ORCID = \"0000-0001-7813-818X\")), person(\"Mark\", \"van der Loo\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9807-4686\")), person(\"Chris\", \"Muir\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2555-3878\")), person(\"Moritz\", \"Beller\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4852-0526\")), person(\"Sebastian\", \"Campbell\", role=\"ctb\", comment = c(ORCID = \"0009-0000-5948-4503\")), person(\"Winston\", \"Chang\", role=\"ctb\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Dean\", \"Attali\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5645-3493\")), person(\"Michael\", \"Chirico\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Kevin\", \"Ushey\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Carl\", \"Pearson\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0701-7860\")))", + "Date": "2025-11-19", + "Title": "Create Compact Hash Digests of R Objects", + "Description": "Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as 'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.", + "URL": "https://github.com/eddelbuettel/digest, https://eddelbuettel.github.io/digest/, https://dirk.eddelbuettel.com/code/digest.html", + "BugReports": "https://github.com/eddelbuettel/digest/issues", + "Depends": [ + "R (>= 3.3.0)" + ], + "Imports": [ "utils" - ] + ], + "License": "GPL (>= 2)", + "Suggests": [ + "tinytest", + "simplermarkdown", + "rbenchmark" + ], + "VignetteBuilder": "simplermarkdown", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Antoine Lucas [ctb] (ORCID: ), Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] (ORCID: ), Simon Urbanek [ctb] (ORCID: ), Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb] (ORCID: ), Duncan Murdoch [ctb], Jim Hester [ctb] (ORCID: ), Wush Wu [ctb] (ORCID: ), Qiang Kou [ctb] (ORCID: ), Thierry Onkelinx [ctb] (ORCID: ), Michel Lang [ctb] (ORCID: ), Viliam Simko [ctb], Kurt Hornik [ctb] (ORCID: ), Radford Neal [ctb] (ORCID: ), Kendon Bell [ctb] (ORCID: ), Matthew de Queljoe [ctb], Dmitry Selivanov [ctb] (ORCID: ), Ion Suruceanu [ctb] (ORCID: ), Bill Denney [ctb] (ORCID: ), Dirk Schumacher [ctb], András Svraka [ctb] (ORCID: ), Sergey Fedorov [ctb] (ORCID: ), Will Landau [ctb] (ORCID: ), Floris Vanderhaeghe [ctb] (ORCID: ), Kevin Tappe [ctb], Harris McGehee [ctb], Tim Mastny [ctb], Aaron Peikert [ctb] (ORCID: ), Mark van der Loo [ctb] (ORCID: ), Chris Muir [ctb] (ORCID: ), Moritz Beller [ctb] (ORCID: ), Sebastian Campbell [ctb] (ORCID: ), Winston Chang [ctb] (ORCID: ), Dean Attali [ctb] (ORCID: ), Michael Chirico [ctb] (ORCID: ), Kevin Ushey [ctb] (ORCID: ), Carl Pearson [ctb] (ORCID: )", + "Maintainer": "Dirk Eddelbuettel ", + "Repository": "CRAN" }, "dplyr": { "Package": "dplyr", "Version": "1.1.4", "Source": "Repository", - 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As different colour spaces have different uses, efficient conversion between these representations are important. The 'farver' package provides a set of functions that gives access to very fast colour space conversion and comparisons implemented in C++, and offers speed improvements over the 'convertColor' function in the 'grDevices' package.", + "License": "MIT + file LICENSE", + "URL": "https://farver.data-imaginist.com, https://github.com/thomasp85/farver", + "BugReports": "https://github.com/thomasp85/farver/issues", + "Suggests": [ + "covr", + "testthat (>= 3.0.0)" + ], + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1", + "NeedsCompilation": "yes", + "Author": "Thomas Lin Pedersen [cre, aut] (), Berendea Nicolae [aut] (Author of the ColorSpace C++ library), Romain François [aut] (), Posit, PBC [cph, fnd]", + "Maintainer": "Thomas Lin Pedersen ", + "Repository": "CRAN" }, "fastmap": { "Package": "fastmap", "Version": "1.2.0", "Source": "Repository", - "Requirements": [] + "Title": "Fast Data Structures", + "Authors@R": "c( person(\"Winston\", \"Chang\", email = \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(given = \"Tessil\", role = \"cph\", comment = \"hopscotch_map library\") )", + "Description": "Fast implementation of data structures, including a key-value store, stack, and queue. Environments are commonly used as key-value stores in R, but every time a new key is used, it is added to R's global symbol table, causing a small amount of memory leakage. This can be problematic in cases where many different keys are used. 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For instance, the elements of a list environment are ordered and can be accessed and iterated over using index subsetting, e.g. 'x <- listenv(a = 1, b = 2); for (i in seq_along(x)) x[[i]] <- x[[i]] ^ 2; y <- as.list(x)'.", + "License": "LGPL (>= 2.1)", + "LazyLoad": "TRUE", + "URL": "https://listenv.futureverse.org, https://github.com/futureverse/listenv", + "BugReports": "https://github.com/futureverse/listenv/issues", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "no", + "Author": "Henrik Bengtsson [aut, cre, cph]", + "Maintainer": "Henrik Bengtsson ", + "Repository": "CRAN" }, "lme4": { "Package": "lme4", "Version": "1.1-38", "Source": "Repository", - "Requirements": [ - "boot", - "graphics", - "grid", - "lattice", - "MASS", + "Title": "Linear Mixed-Effects Models using 'Eigen' and S4", + "Authors@R": "c( person(\"Douglas\",\"Bates\", role=\"aut\", comment=c(ORCID=\"0000-0001-8316-9503\")), person(\"Martin\",\"Maechler\", role=\"aut\", comment=c(ORCID=\"0000-0002-8685-9910\")), person(\"Ben\",\"Bolker\",email=\"bbolker+lme4@gmail.com\", role=c(\"aut\",\"cre\"), comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"Steven\",\"Walker\",role=\"aut\", comment=c(ORCID=\"0000-0002-4394-9078\")), person(\"Rune Haubo Bojesen\",\"Christensen\", role=\"ctb\", comment=c(ORCID=\"0000-0002-4494-3399\")), person(\"Henrik\",\"Singmann\", role=\"ctb\", comment=c(ORCID=\"0000-0002-4842-3657\")), person(\"Bin\", \"Dai\", role=\"ctb\"), person(\"Fabian\", \"Scheipl\", role=\"ctb\", comment=c(ORCID=\"0000-0001-8172-3603\")), person(\"Gabor\", \"Grothendieck\", role=\"ctb\"), person(\"Peter\", \"Green\", role=\"ctb\", comment=c(ORCID=\"0000-0002-0238-9852\")), person(\"John\", \"Fox\", role=\"ctb\"), person(\"Alexander\", \"Bauer\", role=\"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role=c(\"ctb\",\"cph\"), comment=c(ORCID=\"0000-0002-9101-3362\", \"shared copyright on simulate.formula\")), person(\"Emi\", \"Tanaka\", role = \"ctb\", comment = c(ORCID=\"0000-0002-1455-259X\")), person(\"Mikael\", \"Jagan\", role = \"ctb\", comment = c(ORCID=\"0000-0002-3542-2938\")), person(\"Ross D.\", \"Boylan\", email=\"ross.boylan@ucsf.edu\", role=(\"ctb\"), comment = c(ORCID=\"0009-0003-4123-8090\")), person(\"Anna\", \"Ly\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0210-0342\")) )", + "Description": "Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' \"glue\".", + "Depends": [ + "R (>= 3.6.0)", "Matrix", "methods", - "minqa", - "nlme", - "nloptr", + "stats" + ], + "LinkingTo": [ + "Rcpp (>= 0.10.5)", + "RcppEigen (>= 0.3.3.9.4)", + "Matrix (>= 1.5-0)" + ], + "Imports": [ + "graphics", + "grid", + "splines", + "utils", "parallel", - "R", - "Rcpp", - "RcppEigen", - "Rdpack", - "reformulas", + "MASS", + "lattice", + "boot", + "nlme (>= 3.1-123)", + "minqa (>= 1.1.15)", + "nloptr (>= 1.0.4)", + "reformulas (>= 0.3.0)", "rlang", - "splines", - "stats", - "utils" - ] + "Rdpack" + ], + "RdMacros": "Rdpack", + "Suggests": [ + "knitr", + "rmarkdown", + "MEMSS", + "testthat (>= 0.8.1)", + "ggplot2", + "mlmRev", + "optimx (>= 2013.8.6)", + "gamm4", + "pbkrtest", + "HSAUR3", + "numDeriv", + "car", + "dfoptim", + "mgcv", + "statmod", + "rr2", + "semEff", + "tibble", + "merDeriv" + ], + "Enhances": [ + "DHARMa", + "performance" + ], + "VignetteBuilder": "knitr", + "LazyData": "yes", + "License": "GPL (>= 2)", + "URL": "https://github.com/lme4/lme4/", + "BugReports": "https://github.com/lme4/lme4/issues", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Douglas Bates [aut] (ORCID: ), Martin Maechler [aut] (ORCID: ), Ben Bolker [aut, cre] (ORCID: ), Steven Walker [aut] (ORCID: ), Rune Haubo Bojesen Christensen [ctb] (ORCID: ), Henrik Singmann [ctb] (ORCID: ), Bin Dai [ctb], Fabian Scheipl [ctb] (ORCID: ), Gabor Grothendieck [ctb], Peter Green [ctb] (ORCID: ), John Fox [ctb], Alexander Bauer [ctb], Pavel N. Krivitsky [ctb, cph] (ORCID: , shared copyright on simulate.formula), Emi Tanaka [ctb] (ORCID: ), Mikael Jagan [ctb] (ORCID: ), Ross D. Boylan [ctb] (ORCID: ), Anna Ly [ctb] (ORCID: )", + "Maintainer": "Ben Bolker ", + "Repository": "CRAN" }, "lpSolve": { "Package": "lpSolve", "Version": "5.6.23", "Source": "Repository", - "Requirements": [] + "Title": "Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"cre\"), person(\"Michel\", \"Berkelaar\", role = \"aut\") )", + "Description": "Lp_solve is freely available (under LGPL 2) software for solving linear, integer and mixed integer programs. In this implementation we supply a \"wrapper\" function in C and some R functions that solve general linear/integer problems, assignment problems, and transportation problems. This version calls lp_solve version 5.5.", + "License": "LGPL-2", + "URL": "https://github.com/gaborcsardi/lpSolve", + "BugReports": "https://github.com/gaborcsardi/lpSolve/issues", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Gábor Csárdi [cre], Michel Berkelaar [aut]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" }, "magrittr": { "Package": "magrittr", "Version": "2.0.4", "Source": "Repository", - "Requirements": [ - "R" - ] + "Type": "Package", + "Title": "A Forward-Pipe Operator for R", + "Authors@R": "c( person(\"Stefan Milton\", \"Bache\", , \"stefan@stefanbache.dk\", role = c(\"aut\", \"cph\"), comment = \"Original author and creator of magrittr\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"cre\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Description": "Provides a mechanism for chaining commands with a new forward-pipe operator, %>%. This operator will forward a value, or the result of an expression, into the next function call/expression. There is flexible support for the type of right-hand side expressions. For more information, see package vignette. To quote Rene Magritte, \"Ceci n'est pas un pipe.\"", + "License": "MIT + file LICENSE", + "URL": "https://magrittr.tidyverse.org, https://github.com/tidyverse/magrittr", + "BugReports": "https://github.com/tidyverse/magrittr/issues", + "Depends": [ + "R (>= 3.4.0)" + ], + "Suggests": [ + "covr", + "knitr", + "rlang", + "rmarkdown", + "testthat" + ], + "VignetteBuilder": "knitr", + "ByteCompile": "Yes", + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "yes", + "Author": "Stefan Milton Bache [aut, cph] (Original author and creator of magrittr), Hadley Wickham [aut], Lionel Henry [cre], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Lionel Henry ", + "Repository": "CRAN" }, "mgcv": { "Package": "mgcv", - "Version": "1.9-4", + "Version": "1.9-3", "Source": "Repository", - "Requirements": [ + "Authors@R": "person(given = \"Simon\", family = \"Wood\", role = c(\"aut\", \"cre\"), email = \"simon.wood@r-project.org\")", + "Title": "Mixed GAM Computation Vehicle with Automatic Smoothness Estimation", + "Description": "Generalized additive (mixed) models, some of their extensions and other generalized ridge regression with multiple smoothing parameter estimation by (Restricted) Marginal Likelihood, Generalized Cross Validation and similar, or using iterated nested Laplace approximation for fully Bayesian inference. See Wood (2017) for an overview. Includes a gam() function, a wide variety of smoothers, 'JAGS' support and distributions beyond the exponential family.", + "Priority": "recommended", + "Depends": [ + "R (>= 3.6.0)", + "nlme (>= 3.1-64)" + ], + "Imports": [ + "methods", + "stats", "graphics", "Matrix", - "methods", - "nlme", - "R", "splines", - "stats", "utils" - ] + ], + "Suggests": [ + "parallel", + "survival", + "MASS" + ], + "LazyLoad": "yes", + "ByteCompile": "yes", + "License": "GPL (>= 2)", + "NeedsCompilation": "yes", + "Author": "Simon Wood [aut, cre]", + "Maintainer": "Simon Wood ", + "Repository": "CRAN" + }, + "mime": { + "Package": "mime", + "Version": "0.13", + "Source": "Repository", + "Type": "Package", + "Title": "Map Filenames to MIME Types", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Jeffrey\", \"Horner\", role = \"ctb\"), person(\"Beilei\", \"Bian\", role = \"ctb\") )", + "Description": "Guesses the MIME type from a filename extension using the data derived from /etc/mime.types in UNIX-type systems.", + "Imports": [ + "tools" + ], + "License": "GPL", + "URL": "https://github.com/yihui/mime", + "BugReports": "https://github.com/yihui/mime/issues", + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Yihui Xie [aut, cre] (, https://yihui.org), Jeffrey Horner [ctb], Beilei Bian [ctb]", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" }, "minqa": { "Package": "minqa", "Version": "1.2.8", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Derivative-Free Optimization Algorithms by Quadratic Approximation", + "Authors@R": "c(person(given = \"Douglas\", family = \"Bates\", role = \"aut\"), person(given = c(\"Katharine\", \"M.\"), family = \"Mullen\", role = c(\"aut\", \"cre\"), email = \"katharine.mullen@stat.ucla.edu\"), person(given = c(\"John\", \"C.\"), family = \"Nash\", role = \"aut\"), person(given = \"Ravi\", family = \"Varadhan\", role = \"aut\"))", + "Maintainer": "Katharine M. Mullen ", + "Description": "Derivative-free optimization by quadratic approximation based on an interface to Fortran implementations by M. J. D. Powell.", + "License": "GPL-2", + "URL": "http://optimizer.r-forge.r-project.org", + "Imports": [ + "Rcpp (>= 0.9.10)" + ], + "LinkingTo": [ "Rcpp" - ] + ], + "SystemRequirements": "GNU make", + "NeedsCompilation": "yes", + "Repository": "CRAN", + "Author": "Douglas Bates [aut], Katharine M. Mullen [aut, cre], John C. Nash [aut], Ravi Varadhan [aut]" }, "mirt": { "Package": "mirt", "Version": "1.45.1", "Source": "Repository", - "Requirements": [ - "dcurver", - "Deriv", + "Type": "Package", + "Title": "Multidimensional Item Response Theory", + "Authors@R": "c( person(\"Phil\", family=\"Chalmers\", email = \"rphilip.chalmers@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID=\"0000-0001-5332-2810\")), person(\"Joshua\", family=\"Pritikin\", role=c('ctb')), person(\"Alexander\", family=\"Robitzsch\", role=c('ctb')), person(\"Mateusz\", family=\"Zoltak\", role=c('ctb')), person(\"KwonHyun\", family=\"Kim\", role=c('ctb')), person(\"Carl F.\", family=\"Falk\", role=c('ctb')), person(\"Adam\", family=\"Meade\", role=c('ctb')), person(\"Lennart\", family=\"Schneider\", role=c('ctb')), person(\"David\", family=\"King\", role=c('ctb')), person(\"Chen-Wei\", family=\"Liu\", role=c('ctb')), person(\"Ogreden\", family=\"Oguzhan\", role=c('ctb')))", + "Description": "Analysis of discrete response data using unidimensional and multidimensional item analysis models under the Item Response Theory paradigm (Chalmers (2012) ). Exploratory and confirmatory item factor analysis models are estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory bi-factor and two-tier models are available for modeling item testlets using dimension reduction EM algorithms, while multiple group analyses and mixed effects designs are included for detecting differential item, bundle, and test functioning, and for modeling item and person covariates. Finally, latent class models such as the DINA, DINO, multidimensional latent class, mixture IRT models, and zero-inflated response models are supported, as well as a wide family of probabilistic unfolding models.", + "VignetteBuilder": "knitr", + "Depends": [ + "stats", + "R (>= 4.1.0)", + "stats4", + "lattice", + "methods" + ], + "Imports": [ "GPArotation", "gridExtra", - "lattice", - "Matrix", - "methods", - "mgcv", - "pbapply", - "R", + "Matrix (>= 1.5-0)", "Rcpp", - "RcppArmadillo", - "SimDesign", + "mgcv", + "vegan", + "Deriv", "splines", - "stats", - "stats4", - "vegan" - ] + "pbapply (>= 1.3-0)", + "dcurver", + "SimDesign" + ], + "Suggests": [ + "boot", + "latticeExtra", + "directlabels", + "shiny", + "knitr", + "markdown", + "Rsolnp", + "nloptr", + "sirt", + "plink", + "mirtCAT", + "testthat (>= 3.0.0)" + ], + "ByteCompile": "yes", + "LazyLoad": "yes", + "LazyData": "yes", + "LinkingTo": [ + "Rcpp", + "RcppArmadillo" + ], + "License": "GPL (>= 3)", + "Encoding": "UTF-8", + "Repository": "CRAN", + "Maintainer": "Phil Chalmers ", + "URL": "https://philchalmers.github.io/mirt/, https://github.com/philchalmers/mirt/wiki, https://groups.google.com/forum/#!forum/mirt-package", + "BugReports": "https://github.com/philchalmers/mirt/issues?state=open", + "RoxygenNote": "7.3.2", + "Config/testthat/edition": "3", + "NeedsCompilation": "yes", + "Author": "Phil Chalmers [aut, cre] (ORCID: ), Joshua Pritikin [ctb], Alexander Robitzsch [ctb], Mateusz Zoltak [ctb], KwonHyun Kim [ctb], Carl F. Falk [ctb], Adam Meade [ctb], Lennart Schneider [ctb], David King [ctb], Chen-Wei Liu [ctb], Ogreden Oguzhan [ctb]" }, "mnormt": { "Package": "mnormt", "Version": "2.1.1", "Source": "Repository", - "Requirements": [ - "R" - ] + "Date": "2022-09-26", + "Title": "The Multivariate Normal and t Distributions, and Their Truncated Versions", + "Author": "Adelchi Azzalini [aut, cre], Alan Genz [aut] (most Fortran code), Alan Miller [ctb] (Fortran routine PHI), Michael J. Wichura [ctb] (Fortran routine PHINV), G. W. Hill [ctb] (Fortran routine STDINV), Yihong Ge [ctb] (Fortran routines BNVU and MVBVU).", + "Maintainer": "Adelchi Azzalini ", + "Depends": [ + "R (>= 2.2.0)" + ], + "Description": "Functions are provided for computing the density and the distribution function of d-dimensional normal and \"t\" random variables, possibly truncated (on one side or two sides), and for generating random vectors sampled from these distributions, except sampling from the truncated \"t\". Moments of arbitrary order of a multivariate truncated normal are computed, and converted to cumulants up to order 4. Probabilities are computed via non-Monte Carlo methods; different routines are used in the case d=1, d=2, d=3, d>3, if d denotes the dimensionality.", + "License": "GPL-2 | GPL-3", + "URL": "http://azzalini.stat.unipd.it/SW/Pkg-mnormt/", + "NeedsCompilation": "yes", + "Encoding": "UTF-8", + "Repository": "CRAN" }, "nlme": { "Package": "nlme", "Version": "3.1-168", "Source": "Repository", - "Requirements": [ + "Date": "2025-03-31", + "Priority": "recommended", + "Title": "Linear and Nonlinear Mixed Effects Models", + "Authors@R": "c(person(\"José\", \"Pinheiro\", role = \"aut\", comment = \"S version\"), person(\"Douglas\", \"Bates\", role = \"aut\", comment = \"up to 2007\"), person(\"Saikat\", \"DebRoy\", role = \"ctb\", comment = \"up to 2002\"), person(\"Deepayan\", \"Sarkar\", role = \"ctb\", comment = \"up to 2005\"), person(\"EISPACK authors\", role = \"ctb\", comment = \"src/rs.f\"), person(\"Siem\", \"Heisterkamp\", role = \"ctb\", comment = \"Author fixed sigma\"), person(\"Bert\", \"Van Willigen\",role = \"ctb\", comment = \"Programmer fixed sigma\"), person(\"Johannes\", \"Ranke\", role = \"ctb\", comment = \"varConstProp()\"), person(\"R Core Team\", email = \"R-core@R-project.org\", role = c(\"aut\", \"cre\"), comment = c(ROR = \"02zz1nj61\")))", + "Contact": "see 'MailingList'", + "Description": "Fit and compare Gaussian linear and nonlinear mixed-effects models.", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ "graphics", - "lattice", - "R", "stats", - "utils" - ] + "utils", + "lattice" + ], + "Suggests": [ + "MASS", + "SASmixed" + ], + "LazyData": "yes", + "Encoding": "UTF-8", + "License": "GPL (>= 2)", + "BugReports": "https://bugs.r-project.org", + "MailingList": "R-help@r-project.org", + "URL": "https://svn.r-project.org/R-packages/trunk/nlme/", + "NeedsCompilation": "yes", + "Author": "José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre] (02zz1nj61)", + "Maintainer": "R Core Team ", + "Repository": "CRAN" }, "nloptr": { "Package": "nloptr", "Version": "2.2.1", "Source": "Repository", - "Requirements": [] + "Type": "Package", + "Title": "R Interface to NLopt", + "Authors@R": "c(person(\"Jelmer\", \"Ypma\", role = \"aut\", email = \"uctpjyy@ucl.ac.uk\"), person(c(\"Steven\", \"G.\"), \"Johnson\", role = \"aut\", comment = \"author of the NLopt C library\"), person(\"Aymeric\", \"Stamm\", role = c(\"ctb\", \"cre\"), email = \"aymeric.stamm@cnrs.fr\", comment = c(ORCID = \"0000-0002-8725-3654\")), person(c(\"Hans\", \"W.\"), \"Borchers\", role = \"ctb\", email = \"hwborchers@googlemail.com\"), person(\"Dirk\", \"Eddelbuettel\", role = \"ctb\", email = \"edd@debian.org\"), person(\"Brian\", \"Ripley\", role = \"ctb\", comment = \"build process on multiple OS\"), person(\"Kurt\", \"Hornik\", role = \"ctb\", comment = \"build process on multiple OS\"), person(\"Julien\", \"Chiquet\", role = \"ctb\"), person(\"Avraham\", \"Adler\", role = \"ctb\", email = \"Avraham.Adler@gmail.com\", comment = c(ORCID = \"0000-0002-3039-0703\")), person(\"Xiongtao\", \"Dai\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\", email = \"jeroen@berkeley.edu\"), person(\"Tomas\", \"Kalibera\", role = \"ctb\"), person(\"Mikael\", \"Jagan\", role = \"ctb\"))", + "Description": "Solve optimization problems using an R interface to NLopt. NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. See for more information on the available algorithms. Building from included sources requires 'CMake'. On Linux and 'macOS', if a suitable system build of NLopt (2.7.0 or later) is found, it is used; otherwise, it is built from included sources via 'CMake'. On Windows, NLopt is obtained through 'rwinlib' for 'R <= 4.1.x' or grabbed from the appropriate toolchain for 'R >= 4.2.0'.", + "License": "LGPL (>= 3)", + "SystemRequirements": "cmake (>= 3.2.0) which is used only on Linux or macOS systems when no system build of nlopt (>= 2.7.0) can be found.", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "Suggests": [ + "knitr", + "rmarkdown", + "covr", + "tinytest" + ], + "VignetteBuilder": "knitr", + "URL": "https://github.com/astamm/nloptr, https://astamm.github.io/nloptr/", + "BugReports": "https://github.com/astamm/nloptr/issues", + "NeedsCompilation": "yes", + "UseLTO": "yes", + "Author": "Jelmer Ypma [aut], Steven G. Johnson [aut] (author of the NLopt C library), Aymeric Stamm [ctb, cre] (), Hans W. Borchers [ctb], Dirk Eddelbuettel [ctb], Brian Ripley [ctb] (build process on multiple OS), Kurt Hornik [ctb] (build process on multiple OS), Julien Chiquet [ctb], Avraham Adler [ctb] (), Xiongtao Dai [ctb], Jeroen Ooms [ctb], Tomas Kalibera [ctb], Mikael Jagan [ctb]", + "Maintainer": "Aymeric Stamm ", + "Repository": "CRAN" }, "numDeriv": { "Package": "numDeriv", "Version": "2016.8-1.1", "Source": "Repository", - "Requirements": [ - "R" - ] + "Title": "Accurate Numerical Derivatives", + "Description": "Methods for calculating (usually) accurate numerical first and second order derivatives. Accurate calculations are done using 'Richardson''s' extrapolation or, when applicable, a complex step derivative is available. A simple difference method is also provided. Simple difference is (usually) less accurate but is much quicker than 'Richardson''s' extrapolation and provides a useful cross-check. Methods are provided for real scalar and vector valued functions.", + "Depends": [ + "R (>= 2.11.1)" + ], + "LazyLoad": "yes", + "ByteCompile": "yes", + "License": "GPL-2", + "Copyright": "2006-2011, Bank of Canada. 2012-2016, Paul Gilbert", + "Author": "Paul Gilbert and Ravi Varadhan", + "Maintainer": "Paul Gilbert ", + "URL": "http://optimizer.r-forge.r-project.org/", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "officer": { "Package": "officer", "Version": "0.7.2", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Manipulation of Microsoft Word and PowerPoint Documents", + "Authors@R": "c( person(\"David\", \"Gohel\", , \"david.gohel@ardata.fr\", role = c(\"aut\", \"cre\")), person(\"Stefan\", \"Moog\", , \"moogs@gmx.de\", role = \"aut\"), person(\"Mark\", \"Heckmann\", , \"heckmann.mark@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-0736-7417\")), person(\"ArData\", role = \"cph\"), person(\"Frank\", \"Hangler\", , \"frank@plotandscatter.com\", role = \"ctb\", comment = \"function body_replace_all_text\"), person(\"Liz\", \"Sander\", , \"lsander@civisanalytics.com\", role = \"ctb\", comment = \"several documentation fixes\"), person(\"Anton\", \"Victorson\", , \"anton@victorson.se\", role = \"ctb\", comment = \"fixes xml structures\"), person(\"Jon\", \"Calder\", , \"jonmcalder@gmail.com\", role = \"ctb\", comment = \"update vignettes\"), person(\"John\", \"Harrold\", , \"john.m.harrold@gmail.com\", role = \"ctb\", comment = \"function annotate_base\"), person(\"John\", \"Muschelli\", , \"muschellij2@gmail.com\", role = \"ctb\", comment = \"google doc compatibility\"), person(\"Bill\", \"Denney\", , \"wdenney@humanpredictions.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5759-428X\", \"function as.matrix.rpptx\")), person(\"Nikolai\", \"Beck\", , \"beck.nikolai@gmail.com\", role = \"ctb\", comment = \"set speaker notes for .pptx documents\"), person(\"Greg\", \"Leleu\", , \"gregoire.leleu@gmail.com\", role = \"ctb\", comment = \"fields functionality in ppt\"), person(\"Majid\", \"Eismann\", role = \"ctb\"), person(\"Hongyuan\", \"Jia\", , \"hongyuanjia@cqust.edu.cn\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0075-8183\")), person(\"Michael\", \"Stackhouse\", , \"mike.stackhouse@atorusresearch.com\", role = \"ctb\") )", + "Description": "Access and manipulate 'Microsoft Word', 'RTF' and 'Microsoft PowerPoint' documents from R. The package focuses on tabular and graphical reporting from R; it also provides two functions that let users get document content into data objects. A set of functions lets add and remove images, tables and paragraphs of text in new or existing documents. The package does not require any installation of Microsoft products to be able to write Microsoft files.", + "License": "MIT + file LICENSE", + "URL": "https://ardata-fr.github.io/officeverse/, https://davidgohel.github.io/officer/", + "BugReports": "https://github.com/davidgohel/officer/issues", + "Imports": [ "cli", "dplyr", "graphics", @@ -882,93 +2717,303 @@ "tidyr", "utils", "uuid", - "xml2", - "zip" - ] + "xml2 (>= 1.1.0)", + "zip (>= 2.1.0)" + ], + "Suggests": [ + "devEMF", + "doconv (>= 0.3.0)", + "gdtools", + "ggplot2", + "knitr", + "magick", + "rmarkdown", + "rsvg", + "testthat", + "withr" + ], + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "Collate": "'core_properties.R' 'custom_properties.R' 'defunct.R' 'dev-utils.R' 'docx_add.R' 'docx_comments.R' 'docx_cursor.R' 'docx_part.R' 'docx_replace.R' 'docx_section.R' 'docx_settings.R' 'docx_styles.R' 'docx_utils_funs.R' 'empty_content.R' 'formatting_properties.R' 'fortify_docx.R' 'fortify_pptx.R' 'knitr_utils.R' 'officer.R' 'ooxml.R' 'ooxml_block_objects.R' 'ooxml_run_objects.R' 'openxml_content_type.R' 'openxml_document.R' 'pack_folder.R' 'ph_location.R' 'post-proc.R' 'ppt_class_dir_collection.R' 'ppt_classes.R' 'ppt_notes.R' 'ppt_ph_dedupe_layout.R' 'ppt_ph_manipulate.R' 'ppt_ph_rename_layout.R' 'ppt_ph_with_methods.R' 'pptx_informations.R' 'pptx_layout_helper.R' 'pptx_matrix.R' 'utils.R' 'pptx_slide_manip.R' 'read_docx.R' 'docx_write.R' 'read_docx_styles.R' 'read_pptx.R' 'read_xlsx.R' 'relationship.R' 'rtf.R' 'shape_properties.R' 'shorcuts.R' 'docx_append_context.R' 'utils-xml.R' 'deprecated.R' 'zzz.R'", + "NeedsCompilation": "no", + "Author": "David Gohel [aut, cre], Stefan Moog [aut], Mark Heckmann [aut] (ORCID: ), ArData [cph], Frank Hangler [ctb] (function body_replace_all_text), Liz Sander [ctb] (several documentation fixes), Anton Victorson [ctb] (fixes xml structures), Jon Calder [ctb] (update vignettes), John Harrold [ctb] (function annotate_base), John Muschelli [ctb] (google doc compatibility), Bill Denney [ctb] (ORCID: , function as.matrix.rpptx), Nikolai Beck [ctb] (set speaker notes for .pptx documents), Greg Leleu [ctb] (fields functionality in ppt), Majid Eismann [ctb], Hongyuan Jia [ctb] (ORCID: ), Michael Stackhouse [ctb]", + "Maintainer": "David Gohel ", + "Repository": "CRAN" }, "openssl": { "Package": "openssl", "Version": "2.3.4", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Toolkit for Encryption, Signatures and Certificates Based on OpenSSL", + "Authors@R": "c(person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Oliver\", \"Keyes\", role = \"ctb\"))", + "Description": "Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers. Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic signatures can either be created and verified manually or via x509 certificates. AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric (public key) encryption or EC for Diffie Hellman. High-level envelope functions combine RSA and AES for encrypting arbitrary sized data. Other utilities include key generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random number generator, and 'bignum' math methods for manually performing crypto calculations on large multibyte integers.", + "License": "MIT + file LICENSE", + "URL": "https://jeroen.r-universe.dev/openssl", + "BugReports": "https://github.com/jeroen/openssl/issues", + "SystemRequirements": "OpenSSL >= 1.0.2", + "VignetteBuilder": "knitr", + "Imports": [ "askpass" - ] + ], + "Suggests": [ + "curl", + "testthat (>= 2.1.0)", + "digest", + "knitr", + "rmarkdown", + "jsonlite", + "jose", + "sodium" + ], + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Oliver Keyes [ctb]", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" }, "parallelly": { "Package": "parallelly", "Version": "1.45.1", "Source": "Repository", - "Requirements": [ + "Title": "Enhancing the 'parallel' Package", + "Imports": [ "parallel", "tools", "utils" - ] + ], + "Suggests": [ + "commonmark", + "base64enc" + ], + "VignetteBuilder": "parallelly", + "Authors@R": "c( person(\"Henrik\", \"Bengtsson\", role = c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Mike\", \"Cheng\", role = c(\"ctb\"), email = \"mikefc@coolbutuseless.com\") )", + "Description": "Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.", + "License": "LGPL (>= 2.1)", + "LazyLoad": "TRUE", + "ByteCompile": "TRUE", + "URL": "https://parallelly.futureverse.org, https://github.com/futureverse/parallelly", + "BugReports": "https://github.com/futureverse/parallelly/issues", + "Language": "en-US", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "yes", + "Author": "Henrik Bengtsson [aut, cre, cph] (ORCID: ), Mike Cheng [ctb]", + "Maintainer": "Henrik Bengtsson ", + "Repository": "CRAN" }, "pbapply": { "Package": "pbapply", "Version": "1.7-4", "Source": "Repository", - "Requirements": [ - "parallel", - "R" - ] + "Type": "Package", + "Title": "Adding Progress Bar to '*apply' Functions", + "Date": "2025-07-19", + "Authors@R": "c(person(given = \"Peter\", family = \"Solymos\", comment = c(ORCID = \"0000-0001-7337-1740\"), role = c(\"aut\", \"cre\"), email = \"psolymos@gmail.com\"), person(given = \"Zygmunt\", family = \"Zawadzki\", role = \"aut\", email = \"zygmunt@zstat.pl\"), person(given = \"Henrik\", family = \"Bengtsson\", role = \"ctb\", email = \"henrikb@braju.com\"), person(\"R Core Team\", role = c(\"cph\", \"ctb\")))", + "Maintainer": "Peter Solymos ", + "Description": "A lightweight package that adds progress bar to vectorized R functions ('*apply'). The implementation can easily be added to functions where showing the progress is useful (e.g. bootstrap). The type and style of the progress bar (with percentages or remaining time) can be set through options. Supports several parallel processing backends including mirai and future.", + "Depends": [ + "R (>= 3.2.0)" + ], + "Imports": [ + "parallel" + ], + "Suggests": [ + "shiny", + "future", + "future.apply" + ], + "License": "GPL (>= 2)", + "URL": "https://github.com/psolymos/pbapply, https://peter.solymos.org/pbapply/", + "BugReports": "https://github.com/psolymos/pbapply/issues", + "NeedsCompilation": "no", + "Author": "Peter Solymos [aut, cre] (ORCID: ), Zygmunt Zawadzki [aut], Henrik Bengtsson [ctb], R Core Team [cph, ctb]", + "Repository": "CRAN" }, "pbivnorm": { "Package": "pbivnorm", "Version": "0.6.0", "Source": "Repository", - "Requirements": [] + "Title": "Vectorized Bivariate Normal CDF", + "Date": "2015-01-23", + "Author": "Fortran code by Alan Genz. R code by Brenton Kenkel, based on Adelchi Azzalini's 'mnormt' package.", + "Maintainer": "Brenton Kenkel ", + "Description": "Provides a vectorized R function for calculating probabilities from a standard bivariate normal CDF.", + "License": "GPL (>= 2)", + "URL": "https://github.com/brentonk/pbivnorm", + "NeedsCompilation": "yes", + "Repository": "CRAN" }, "permute": { "Package": "permute", "Version": "0.9-8", "Source": "Repository", - "Requirements": [ - "R", + "Title": "Functions for Generating Restricted Permutations of Data", + "Date": "2025-06-25", + "Authors@R": "c(person(given = \"Gavin L.\", family = \"Simpson\", email = \"ucfagls@gmail.com\", role = c(\"aut\", \"cph\", \"cre\"), comment = c(ORCID = \"0000-0002-9084-8413\")), person(given = \"R Core Team\", role = \"cph\"), person(given = \"Douglas M.\", family = \"Bates\", role = \"ctb\"), person(given = \"Jari\", family = \"Oksanen\", role = \"ctb\"))", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ "stats" - ] + ], + "Suggests": [ + "vegan (>= 2.0-0)", + "testthat (>= 0.5)", + "parallel", + "knitr", + "rmarkdown", + "bookdown", + "sessioninfo" + ], + "Description": "A set of restricted permutation designs for freely exchangeable, line transects (time series), and spatial grid designs plus permutation of blocks (groups of samples) is provided. 'permute' also allows split-plot designs, in which the whole-plots or split-plots or both can be freely-exchangeable or one of the restricted designs. The 'permute' package is modelled after the permutation schemes of 'Canoco 3.1' (and later) by Cajo ter Braak.", + "License": "GPL-2", + "ByteCompile": "true", + "URL": "https://github.com/gavinsimpson/permute", + "BugReports": "https://github.com/gavinsimpson/permute/issues", + "Copyright": "see file COPYRIGHTS", + "VignetteBuilder": "knitr", + "NeedsCompilation": "no", + "Author": "Gavin L. Simpson [aut, cph, cre] (ORCID: ), R Core Team [cph], Douglas M. Bates [ctb], Jari Oksanen [ctb]", + "Maintainer": "Gavin L. Simpson ", + "Repository": "CRAN" }, "pillar": { "Package": "pillar", "Version": "1.11.1", "Source": "Repository", - "Requirements": [ - "cli", + "Title": "Coloured Formatting for Columns", + "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Hadley\", family = \"Wickham\", role = \"aut\"), person(given = \"RStudio\", role = \"cph\"))", + "Description": "Provides 'pillar' and 'colonnade' generics designed for formatting columns of data using the full range of colours provided by modern terminals.", + "License": "MIT + file LICENSE", + "URL": "https://pillar.r-lib.org/, https://github.com/r-lib/pillar", + "BugReports": "https://github.com/r-lib/pillar/issues", + "Imports": [ + "cli (>= 2.3.0)", "glue", "lifecycle", - "rlang", - "utf8", + "rlang (>= 1.0.2)", + "utf8 (>= 1.1.0)", "utils", - "vctrs" - ] + "vctrs (>= 0.5.0)" + ], + "Suggests": [ + "bit64", + "DBI", + "debugme", + "DiagrammeR", + "dplyr", + "formattable", + "ggplot2", + "knitr", + "lubridate", + "nanotime", + "nycflights13", + "palmerpenguins", + "rmarkdown", + "scales", + "stringi", + "survival", + "testthat (>= 3.1.1)", + "tibble", + "units (>= 0.7.2)", + "vdiffr", + "withr" + ], + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3.9000", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", + "Config/testthat/start-first": "format_multi_fuzz, format_multi_fuzz_2, format_multi, ctl_colonnade, ctl_colonnade_1, ctl_colonnade_2", + "Config/autostyle/scope": "line_breaks", + "Config/autostyle/strict": "true", + "Config/gha/extra-packages": "units=?ignore-before-r=4.3.0", + "Config/Needs/website": "tidyverse/tidytemplate", + "NeedsCompilation": "no", + "Author": "Kirill Müller [aut, cre] (ORCID: ), Hadley Wickham [aut], RStudio [cph]", + "Maintainer": "Kirill Müller ", + "Repository": "CRAN" }, "pkgbuild": { "Package": "pkgbuild", "Version": "1.4.8", "Source": "Repository", - "Requirements": [ - "callr", - "cli", + "Title": "Find Tools Needed to Build R Packages", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Description": "Provides functions used to build R packages. Locates compilers needed to build R packages on various platforms and ensures the PATH is configured appropriately so R can use them.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/pkgbuild, https://pkgbuild.r-lib.org", + "BugReports": "https://github.com/r-lib/pkgbuild/issues", + "Depends": [ + "R (>= 3.5)" + ], + "Imports": [ + "callr (>= 3.2.0)", + "cli (>= 3.4.0)", "desc", "processx", - "R", "R6" - ] + ], + "Suggests": [ + "covr", + "cpp11", + "knitr", + "Rcpp", + "rmarkdown", + "testthat (>= 3.2.0)", + "withr (>= 2.3.0)" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-30", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut], Jim Hester [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" }, "pkgconfig": { "Package": "pkgconfig", "Version": "2.0.3", "Source": "Repository", - "Requirements": [ + "Title": "Private Configuration for 'R' Packages", + "Author": "Gábor Csárdi", + "Maintainer": "Gábor Csárdi ", + "Description": "Set configuration options on a per-package basis. Options set by a given package only apply to that package, other packages are unaffected.", + "License": "MIT + file LICENSE", + "LazyData": "true", + "Imports": [ "utils" - ] + ], + "Suggests": [ + "covr", + "testthat", + "disposables (>= 1.0.3)" + ], + "URL": "https://github.com/r-lib/pkgconfig#readme", + "BugReports": "https://github.com/r-lib/pkgconfig/issues", + "Encoding": "UTF-8", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "pkgload": { "Package": "pkgload", "Version": "1.4.1", "Source": "Repository", - "Requirements": [ - "cli", + "Title": "Simulate Package Installation and Attach", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Core team\", role = \"ctb\", comment = \"Some namespace and vignette code extracted from base R\") )", + "Description": "Simulates the process of installing a package and then attaching it. 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For example, you might want to fit a model to each spatial location or time point in your study, summarise data by panels or collapse high-dimensional arrays to simpler summary statistics. The development of 'plyr' has been generously supported by 'Becton Dickinson'.", + "License": "MIT + file LICENSE", + "URL": "http://had.co.nz/plyr, https://github.com/hadley/plyr", + "BugReports": "https://github.com/hadley/plyr/issues", + "Depends": [ + "R (>= 3.1.0)" + ], + "Imports": [ + "Rcpp (>= 0.11.0)" + ], + "Suggests": [ + "abind", + "covr", + "doParallel", + "foreach", + "iterators", + "itertools", + "tcltk", + "testthat" + ], + "LinkingTo": [ "Rcpp" - ] + ], + "Encoding": "UTF-8", + "LazyData": "true", + "RoxygenNote": "7.2.3", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [aut, cre]", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" }, "praise": { "Package": "praise", "Version": "1.0.0", "Source": "Repository", - "Requirements": [] + "Title": "Praise Users", + "Author": "Gabor Csardi, Sindre Sorhus", + "Maintainer": "Gabor Csardi ", + "Description": "Build friendly R packages that praise their users if they have done something good, or they just need it to feel better.", + "License": "MIT + file LICENSE", + "LazyData": "true", + "URL": "https://github.com/gaborcsardi/praise", + "BugReports": "https://github.com/gaborcsardi/praise/issues", + "Suggests": [ + "testthat" + ], + "Collate": "'adjective.R' 'adverb.R' 'exclamation.R' 'verb.R' 'rpackage.R' 'package.R'", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "processx": { "Package": "processx", "Version": "3.8.6", "Source": "Repository", - "Requirements": [ - "ps", - "R", + "Title": "Execute and Control System Processes", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )", + "Description": "Tools to run system processes in the background. It can check if a background process is running; wait on a background process to finish; get the exit status of finished processes; kill background processes. It can read the standard output and error of the processes, using non-blocking connections. 'processx' can poll a process for standard output or error, with a timeout. It can also poll several processes at once.", + "License": "MIT + file LICENSE", + "URL": "https://processx.r-lib.org, https://github.com/r-lib/processx", + "BugReports": "https://github.com/r-lib/processx/issues", + "Depends": [ + "R (>= 3.4.0)" + ], + "Imports": [ + "ps (>= 1.2.0)", "R6", "utils" - ] + ], + "Suggests": [ + "callr (>= 3.7.3)", + "cli (>= 3.3.0)", + "codetools", + "covr", + "curl", + "debugme", + "parallel", + "rlang (>= 1.0.2)", + "testthat (>= 3.0.0)", + "webfakes", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1.9000", + "NeedsCompilation": "yes", + "Author": "Gábor Csárdi [aut, cre, cph] (), Winston Chang [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph, fnd]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" }, "progressr": { "Package": "progressr", "Version": "0.18.0", "Source": "Repository", - "Requirements": [ + "Title": "An Inclusive, Unifying API for Progress Updates", + "Description": "A minimal, unifying API for scripts and packages to report progress updates from anywhere including when using parallel processing. The package is designed such that the developer can to focus on what progress should be reported on without having to worry about how to present it. The end user has full control of how, where, and when to render these progress updates, e.g. in the terminal using utils::txtProgressBar(), cli::cli_progress_bar(), in a graphical user interface using utils::winProgressBar(), tcltk::tkProgressBar() or shiny::withProgress(), via the speakers using beepr::beep(), or on a file system via the size of a file. Anyone can add additional, customized, progression handlers. The 'progressr' package uses R's condition framework for signaling progress updated. Because of this, progress can be reported from almost anywhere in R, e.g. from classical for and while loops, from map-reduce API:s like the lapply() family of functions, 'purrr', 'plyr', and 'foreach'. It will also work with parallel processing via the 'future' framework, e.g. future.apply::future_lapply(), furrr::future_map(), and 'foreach' with 'doFuture'. The package is compatible with Shiny applications.", + "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role = c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\", comment = c(ORCID = \"0000-0002-7579-5165\")))", + "License": "GPL (>= 3)", + "Depends": [ + "R (>= 3.5.0)" + ], + "Imports": [ "digest", - "R", "utils" - ] + ], + "Suggests": [ + "graphics", + "tcltk", + "beepr", + "cli", + "crayon", + "pbmcapply", + "progress", + "purrr", + "foreach", + "plyr", + "doFuture", + "future", + "future.apply", + "furrr", + "ntfy", + "RPushbullet", + "rstudioapi", + "shiny", + "commonmark", + "base64enc", + "tools" + ], + "VignetteBuilder": "progressr", + "Language": "en-US", + "Encoding": "UTF-8", + "URL": "https://progressr.futureverse.org, https://github.com/futureverse/progressr", + "BugReports": "https://github.com/futureverse/progressr/issues", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "no", + "Author": "Henrik Bengtsson [aut, cre, cph] (ORCID: )", + "Maintainer": "Henrik Bengtsson ", + "Repository": "CRAN" }, "ps": { "Package": "ps", "Version": "1.9.1", "Source": "Repository", - "Requirements": [ - "R", + "Title": "List, Query, Manipulate System Processes", + "Authors@R": "c( person(\"Jay\", \"Loden\", role = \"aut\"), person(\"Dave\", \"Daeschler\", role = \"aut\"), person(\"Giampaolo\", \"Rodola'\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "List, query and manipulate all system processes, on 'Windows', 'Linux' and 'macOS'.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/ps, https://ps.r-lib.org/", + "BugReports": "https://github.com/r-lib/ps/issues", + "Depends": [ + "R (>= 3.4)" + ], + "Imports": [ "utils" - ] + ], + "Suggests": [ + "callr", + "covr", + "curl", + "pillar", + "pingr", + "processx (>= 3.1.0)", + "R6", + "rlang", + "testthat (>= 3.0.0)", + "webfakes", + "withr" + ], + "Biarch": "true", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "yes", + "Author": "Jay Loden [aut], Dave Daeschler [aut], Giampaolo Rodola' [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" }, "psych": { "Package": "psych", "Version": "2.5.6", "Source": "Repository", - "Requirements": [ - "GPArotation", + "Date": "2025-06-20", + "Title": "Procedures for Psychological, Psychometric, and Personality Research", + "Authors@R": "person(\"William\", \"Revelle\", role =c(\"aut\",\"cre\"), email=\"revelle@northwestern.edu\", comment=c(ORCID = \"0000-0003-4880-9610\") )", + "Description": "A general purpose toolbox developed originally for personality, psychometric theory and experimental psychology. 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The 'ragg' package provides a set of graphic devices based on AGG to use as alternative to the raster devices provided through the 'grDevices' package.", + "License": "MIT + file LICENSE", + "URL": "https://ragg.r-lib.org, https://github.com/r-lib/ragg", + "BugReports": "https://github.com/r-lib/ragg/issues", + "Imports": [ + "systemfonts (>= 1.0.3)", + "textshaping (>= 0.3.0)" + ], + "Suggests": [ + "covr", + "graphics", + "grid", + "testthat (>= 3.0.0)" + ], + "LinkingTo": [ "systemfonts", "textshaping" - ] + ], + "Config/build/compilation-database": "true", + "Config/Needs/website": "ggplot2, devoid, magick, bench, tidyr, ggridges, hexbin, sessioninfo, pkgdown, tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-25", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "SystemRequirements": "freetype2, libpng, libtiff, libjpeg, libwebp, libwebpmux", + "NeedsCompilation": "yes", + "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: ), Maxim Shemanarev [aut, cph] (Author of AGG), Tony Juricic [ctb, cph] (Contributor to AGG), Milan Marusinec [ctb, cph] (Contributor to AGG), Spencer Garrett [ctb] (Contributor to AGG), Posit Software, PBC [cph, fnd] (ROR: )", + "Repository": "CRAN" }, "rbibutils": { "Package": "rbibutils", "Version": "2.4", "Source": "Repository", - "Requirements": [ - "R", - "tools", - "utils" - ] + "Type": "Package", + "Title": "Read 'Bibtex' Files and Convert Between Bibliography Formats", + "Authors@R": "c( person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"aut\", \"cre\"), \t email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(\"R port, R code, new C code and modifications to bibutils' C code, conversion to Bibentry (R and C code)\", comment = c(ORCID = \"0000-0003-2839-346X\")) ), person(given = \"Chris\", family = \"Putman\", role = \"aut\", comment = \"src/*, author of the bibutils libraries, https://sourceforge.net/projects/bibutils/\"), person(given = \"Richard\", family = \"Mathar\", role = \"ctb\", comment = \"src/addsout.c\"), person(given = \"Johannes\", family = \"Wilm\", role = \"ctb\", comment = \"src/biblatexin.c, src/bltypes.c\"), person(\"R Core Team\", role = \"ctb\", comment = \"base R's bibentry and bibstyle implementation\") )", + "Description": "Read and write 'Bibtex' files. Convert between bibliography formats, including 'Bibtex', 'Biblatex', 'PubMed', 'Endnote', and 'Bibentry'. Includes a port of the 'bibutils' utilities by Chris Putnam . Supports all bibliography formats and character encodings implemented in 'bibutils'.", + "License": "GPL-2", + "URL": "https://geobosh.github.io/rbibutils/ (doc), https://github.com/GeoBosh/rbibutils (devel)", + "BugReports": "https://github.com/GeoBosh/rbibutils/issues", + "Depends": [ + "R (>= 2.10)" + ], + "Imports": [ + "utils", + "tools" + ], + "Suggests": [ + "testthat" + ], + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Config/Needs/memcheck": "devtools, rcmdcheck", + "Author": "Georgi N. 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This package provides the 'install_*' functions in 'devtools'. 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'tidyr' contains tools for changing the shape (pivoting) and hierarchy (nesting and 'unnesting') of a dataset, turning deeply nested lists into rectangular data frames ('rectangling'), and extracting values out of string columns. 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Simpson [aut], F. Guillaume Blanchet [aut], Roeland Kindt [aut], Pierre Legendre [aut], Peter R. Minchin [aut], R.B. O'Hara [aut], Peter Solymos [aut], M. Henry H. Stevens [aut], Eduard Szoecs [aut], Helene Wagner [aut], Matt Barbour [aut], Michael Bedward [aut], Ben Bolker [aut], Daniel Borcard [aut], Tuomas Borman [aut], Gustavo Carvalho [aut], Michael Chirico [aut], Miquel De Caceres [aut], Sebastien Durand [aut], Heloisa Beatriz Antoniazi Evangelista [aut], Rich FitzJohn [aut], Michael Friendly [aut], Brendan Furneaux [aut], Geoffrey Hannigan [aut], Mark O. Hill [aut], Leo Lahti [aut], Cameron Martino [aut], Dan McGlinn [aut], Marie-Helene Ouellette [aut], Eduardo Ribeiro Cunha [aut], Tyler Smith [aut], Adrian Stier [aut], Cajo J.F. Ter Braak [aut], James Weedon [aut]", + "Maintainer": "Jari Oksanen ", + "Repository": "CRAN" }, "viridisLite": { "Package": "viridisLite", "Version": "0.4.2", "Source": "Repository", - "Requirements": [ - "R" - ] + "Type": "Package", + "Title": "Colorblind-Friendly Color Maps (Lite Version)", + "Date": "2023-05-02", + "Authors@R": "c( person(\"Simon\", \"Garnier\", email = \"garnier@njit.edu\", role = c(\"aut\", \"cre\")), person(\"Noam\", \"Ross\", email = \"noam.ross@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Bob\", \"Rudis\", email = \"bob@rud.is\", role = c(\"ctb\", \"cph\")), person(\"Marco\", \"Sciaini\", email = \"sciaini.marco@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Antônio Pedro\", \"Camargo\", role = c(\"ctb\", \"cph\")), person(\"Cédric\", \"Scherer\", email = \"scherer@izw-berlin.de\", role = c(\"ctb\", \"cph\")) )", + "Maintainer": "Simon Garnier ", + "Description": "Color maps designed to improve graph readability for readers with common forms of color blindness and/or color vision deficiency. The color maps are also perceptually-uniform, both in regular form and also when converted to black-and-white for printing. This is the 'lite' version of the 'viridis' package that also contains 'ggplot2' bindings for discrete and continuous color and fill scales and can be found at .", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "Depends": [ + "R (>= 2.10)" + ], + "Suggests": [ + "hexbin (>= 1.27.0)", + "ggplot2 (>= 1.0.1)", + "testthat", + "covr" + ], + "URL": "https://sjmgarnier.github.io/viridisLite/, https://github.com/sjmgarnier/viridisLite/", + "BugReports": "https://github.com/sjmgarnier/viridisLite/issues/", + "RoxygenNote": "7.2.3", + "NeedsCompilation": "no", + "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Antônio Pedro Camargo [ctb, cph], Cédric Scherer [ctb, cph]", + "Repository": "CRAN" }, "waldo": { "Package": "waldo", "Version": "0.6.2", "Source": "Repository", - "Requirements": [ + "Title": "Find Differences Between R Objects", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Compare complex R objects and reveal the key differences. Designed particularly for use in testing packages where being able to quickly isolate key differences makes understanding test failures much easier.", + "License": "MIT + file LICENSE", + "URL": "https://waldo.r-lib.org, https://github.com/r-lib/waldo", + "BugReports": "https://github.com/r-lib/waldo/issues", + "Depends": [ + "R (>= 4.0)" + ], + "Imports": [ "cli", - "diffobj", + "diffobj (>= 0.3.4)", "glue", "methods", - "R", - "rlang" - ] + "rlang (>= 1.1.0)" + ], + "Suggests": [ + "bit64", + "R6", + "S7", + "testthat (>= 3.0.0)", + "withr", + "xml2" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd]", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" }, "withr": { "Package": "withr", "Version": "3.0.2", "Source": "Repository", - "Requirements": [ + "Title": "Run Code 'With' Temporarily Modified Global State", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Kirill\", \"Müller\", , \"krlmlr+r@mailbox.org\", role = \"aut\"), person(\"Kevin\", \"Ushey\", , \"kevinushey@gmail.com\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jennifer\", \"Bryan\", role = \"ctb\"), person(\"Richard\", \"Cotton\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "A set of functions to run code 'with' safely and temporarily modified global state. Many of these functions were originally a part of the 'devtools' package, this provides a simple package with limited dependencies to provide access to these functions.", + "License": "MIT + file LICENSE", + "URL": "https://withr.r-lib.org, https://github.com/r-lib/withr#readme", + "BugReports": "https://github.com/r-lib/withr/issues", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ "graphics", - "grDevices", - "R" - ] + "grDevices" + ], + "Suggests": [ + "callr", + "DBI", + "knitr", + "methods", + "rlang", + "rmarkdown (>= 2.12)", + "RSQLite", + "testthat (>= 3.0.0)" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "Collate": "'aaa.R' 'collate.R' 'connection.R' 'db.R' 'defer-exit.R' 'standalone-defer.R' 'defer.R' 'devices.R' 'local_.R' 'with_.R' 'dir.R' 'env.R' 'file.R' 'language.R' 'libpaths.R' 'locale.R' 'makevars.R' 'namespace.R' 'options.R' 'par.R' 'path.R' 'rng.R' 'seed.R' 'wrap.R' 'sink.R' 'tempfile.R' 'timezone.R' 'torture.R' 'utils.R' 'with.R'", + "NeedsCompilation": "no", + "Author": "Jim Hester [aut], Lionel Henry [aut, cre], Kirill Müller [aut], Kevin Ushey [aut], Hadley Wickham [aut], Winston Chang [aut], Jennifer Bryan [ctb], Richard Cotton [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Lionel Henry ", + "Repository": "CRAN" }, "xml2": { "Package": "xml2", "Version": "1.5.1", "Source": "Repository", - "Requirements": [ + "Title": "Parse XML", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", email = \"jeroenooms@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Foundation\", role = \"ctb\", comment = \"Copy of R-project homepage cached as example\") )", + "Description": "Bindings to 'libxml2' for working with XML data using a simple, consistent interface based on 'XPath' expressions. Also supports XML schema validation; for 'XSLT' transformations see the 'xslt' package.", + "License": "MIT + file LICENSE", + "URL": "https://xml2.r-lib.org, https://r-lib.r-universe.dev/xml2", + "BugReports": "https://github.com/r-lib/xml2/issues", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ "cli", "methods", - "R", - "rlang" - ] + "rlang (>= 1.1.0)" + ], + "Suggests": [ + "covr", + "curl", + "httr", + "knitr", + "mockery", + "rmarkdown", + "testthat (>= 3.2.0)", + "xslt" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "SystemRequirements": "libxml2: libxml2-dev (deb), libxml2-devel (rpm)", + "Collate": "'S4.R' 'as_list.R' 'xml_parse.R' 'as_xml_document.R' 'classes.R' 'format.R' 'import-standalone-obj-type.R' 'import-standalone-purrr.R' 'import-standalone-types-check.R' 'init.R' 'nodeset_apply.R' 'paths.R' 'utils.R' 'xml2-package.R' 'xml_attr.R' 'xml_children.R' 'xml_document.R' 'xml_find.R' 'xml_missing.R' 'xml_modify.R' 'xml_name.R' 'xml_namespaces.R' 'xml_node.R' 'xml_nodeset.R' 'xml_path.R' 'xml_schema.R' 'xml_serialize.R' 'xml_structure.R' 'xml_text.R' 'xml_type.R' 'xml_url.R' 'xml_write.R' 'zzz.R'", + "Config/testthat/edition": "3", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [aut], Jim Hester [aut], Jeroen Ooms [aut, cre], Posit Software, PBC [cph, fnd], R Foundation [ctb] (Copy of R-project homepage cached as example)", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" }, "zip": { "Package": "zip", "Version": "2.3.3", "Source": "Repository", - "Requirements": [] + "Title": "Cross-Platform 'zip' Compression", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kuba\", \"Podgórski\", role = \"ctb\"), person(\"Rich\", \"Geldreich\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Description": "Cross-Platform 'zip' Compression Library. A replacement for the 'zip' function, that does not require any additional external tools on any platform.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/zip, https://r-lib.github.io/zip/", + "BugReports": "https://github.com/r-lib/zip/issues", + "Suggests": [ + "covr", + "pillar", + "processx", + "R6", + "testthat", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-05-07", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2.9000", + "NeedsCompilation": "yes", + "Author": "Gábor Csárdi [aut, cre], Kuba Podgórski [ctb], Rich Geldreich [ctb], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" } } } diff --git a/tests/testthat/_snaps/standardErrorOfMeasurement/anova-ci-plot.svg b/tests/testthat/_snaps/standardErrorOfMeasurement/anova-ci-plot.svg index ead11e03..7538ca9d 100644 --- a/tests/testthat/_snaps/standardErrorOfMeasurement/anova-ci-plot.svg +++ b/tests/testthat/_snaps/standardErrorOfMeasurement/anova-ci-plot.svg @@ -72,7 +72,7 @@ 2 4 Sum Score -True Score +True Score Estimate anova-ci-plot diff --git a/tests/testthat/_snaps/standardErrorOfMeasurement/feldt-ci-plot.svg b/tests/testthat/_snaps/standardErrorOfMeasurement/feldt-ci-plot.svg index 29a83a3c..61a15115 100644 --- a/tests/testthat/_snaps/standardErrorOfMeasurement/feldt-ci-plot.svg +++ b/tests/testthat/_snaps/standardErrorOfMeasurement/feldt-ci-plot.svg @@ -18,63 +18,61 @@ - + - - + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - -0 -2 -4 -6 - - - - - - - - -0 -2 -4 -Sum Score -True Score -feldt-ci-plot + +0.0 +2.5 +5.0 + + + + + + + +0 +2 +4 +Sum Score +True Score Estimate +feldt-ci-plot diff --git a/tests/testthat/_snaps/standardErrorOfMeasurement/keats-ci-plot.svg b/tests/testthat/_snaps/standardErrorOfMeasurement/keats-ci-plot.svg index feb40681..6d94fd35 100644 --- a/tests/testthat/_snaps/standardErrorOfMeasurement/keats-ci-plot.svg +++ b/tests/testthat/_snaps/standardErrorOfMeasurement/keats-ci-plot.svg @@ -74,7 +74,7 @@ 2 4 Sum Score -True Score +True Score Estimate keats-ci-plot diff --git a/tests/testthat/_snaps/unidimensionalReliabilityBayesian/coefficient-omega-item.svg b/tests/testthat/_snaps/unidimensionalReliabilityBayesian/coefficient-omega-item.svg index b32d200e..7a2fba96 100644 --- a/tests/testthat/_snaps/unidimensionalReliabilityBayesian/coefficient-omega-item.svg +++ b/tests/testthat/_snaps/unidimensionalReliabilityBayesian/coefficient-omega-item.svg @@ -84,9 +84,9 @@ 0.2 0.4 0.6 -Coefficient - -ω +McDonald's + +ω Item Dropped coefficient-omega-item diff --git a/tests/testthat/_snaps/unidimensionalReliabilityBayesian/coefficient-omega-scale.svg b/tests/testthat/_snaps/unidimensionalReliabilityBayesian/coefficient-omega-scale.svg index c7673416..72a7863e 100644 --- a/tests/testthat/_snaps/unidimensionalReliabilityBayesian/coefficient-omega-scale.svg +++ b/tests/testthat/_snaps/unidimensionalReliabilityBayesian/coefficient-omega-scale.svg @@ -69,9 +69,9 @@ 0.6 0.8 1.0 -Coefficient - -ω +McDonald's + +ω Density coefficient-omega-scale diff --git a/tests/testthat/_snaps/unidimensionalReliabilityBayesian/coefficient-omega-std.svg b/tests/testthat/_snaps/unidimensionalReliabilityBayesian/coefficient-omega-std.svg index 32182ab3..83c8ae7d 100644 --- a/tests/testthat/_snaps/unidimensionalReliabilityBayesian/coefficient-omega-std.svg +++ b/tests/testthat/_snaps/unidimensionalReliabilityBayesian/coefficient-omega-std.svg @@ -67,9 +67,9 @@ 0.6 0.7 0.8 -Coefficient - -ω +McDonald's + +ω Density coefficient-omega-std diff --git a/tests/testthat/_snaps/unidimensionalReliabilityBayesian/coefficient-omega-tp.svg b/tests/testthat/_snaps/unidimensionalReliabilityBayesian/coefficient-omega-tp.svg index 9c54608c..fecd440c 100644 --- a/tests/testthat/_snaps/unidimensionalReliabilityBayesian/coefficient-omega-tp.svg +++ b/tests/testthat/_snaps/unidimensionalReliabilityBayesian/coefficient-omega-tp.svg @@ -58,9 +58,9 @@ 100 150 Iterations -Coefficient - -ω +McDonald's + +ω coefficient-omega-tp diff --git a/tests/testthat/_snaps/unidimensionalReliabilityBayesian/omega-prior-adjusted.svg b/tests/testthat/_snaps/unidimensionalReliabilityBayesian/omega-prior-adjusted.svg index b0a74ed8..eb114057 100644 --- a/tests/testthat/_snaps/unidimensionalReliabilityBayesian/omega-prior-adjusted.svg +++ b/tests/testthat/_snaps/unidimensionalReliabilityBayesian/omega-prior-adjusted.svg @@ -67,9 +67,9 @@ 0.6 0.8 1.0 -Coefficient - -ω +McDonald's + +ω Density omega-prior-adjusted diff --git a/tests/testthat/test-standardErrorOfMeasurement.R b/tests/testthat/test-standardErrorOfMeasurement.R index e5d21aca..f3d30dec 100644 --- a/tests/testthat/test-standardErrorOfMeasurement.R +++ b/tests/testthat/test-standardErrorOfMeasurement.R @@ -38,35 +38,35 @@ options <- list( results <- runAnalysis("standardErrorOfMeasurement", dataset = testthat::test_path("asrm.csv"), options = options, makeTests = FALSE) -test_that("Standard error of measurement table results match", { - -table <- results[["results"]][["semMainContainer"]][["collection"]][["semMainContainer_coefficientTable"]][["data"]] -jaspTools::expect_equal_tables(table, - list(1.50791562224467, 3, 1.25166555703457, 1.4287178895478, - 0.810972506211266, 5, 0.925820099772551, 1.50791562224467, 0, - 1.25166555703457, 1.49703106451365, 1.07055114141815, 6, 0.925820099772551, - 1.50791562224467, 2, 1.25166555703457, 1.54510894064586, 1.23298708781764, - 7, 0.925820099772551, 1.50791562224467, 4, 1.25166555703457, - 1.53986972817318, 1.34041735804632, 8, 0.925820099772551, 1.50791562224467, - 6, 1.25166555703457, 1.51867216206786, 1.41137323284577, 9, 0.925820099772551, - 1.1878488323372, 7, 1.11024271620619, 1.52424619129076, 1.45689201232324, - 10, 0.866025403784439, 1.1878488323372, 5, 1.11024271620619, - 1.5235523748015, 1.48489344540488, 11, 0.866025403784439, 1.72451684054791, - 7, 1.65123060170286, 1.48885399722157, 1.50186786343546, 12, - 1.64189930669738, 1.72451684054791, 9, 1.65123060170286, 1.44988865277158, +test_that("Standard Error of Measurement table results match", { + table <- results[["results"]][["semMainContainer"]][["collection"]][["semMainContainer_coefficientTable"]][["data"]] + jaspTools::expect_equal_tables(table, + list(1.50791562224467, 3, 1.33767168953407, 1.42871788954944, 0.810972506211266, + 5, 0.925820099772551, 1.50791562224467, 0, 1.33767168953407, + 1.49703106451467, 1.07055114141815, 6, 0.925820099772551, 1.50791562224467, + 2, 1.33767168953407, 1.54510894064619, 1.23298708781764, 7, + 0.925820099772551, 1.50791562224467, 4, 1.33767168953407, 1.53986972817388, + 1.34041735804632, 8, 0.925820099772551, 1.50791562224467, 6, + 1.33767168953407, 1.51867216206909, 1.41137323284577, 9, 0.925820099772551, + 1.1878488323372, 7, 1.13338336703573, 1.52424619129158, 1.45689201232324, + 10, 0.866025403784439, 1.1878488323372, 5, 1.13338336703573, + 1.52355237480235, 1.48489344540488, 11, 0.866025403784439, 1.72451684054791, + 7, 1.70918401391582, 1.48885399722353, 1.50186786343546, 12, + 1.64189930669738, 1.72451684054791, 9, 1.70918401391582, 1.44988865277463, 1.51365121198181, 13, 1.64189930669738, 1.62117399689396, 13, - 1.55757359471666, 1.46250310836144, 1.52578416955645, 14, 1.53589529557661, - 1.43811745632331, 11, 1.37119119354531, 1.47211242437243, 1.54361561010075, - 15, 1.57249078621379, 1.91287503750007, 6, 1.58244501686629, - 1.40088808515813, 1.57221038715823, 16, 1.84390889145858, 1.91287503750007, - 1, 1.58244501686629, 1.22842056164903, 1.61611151602076, 17, - 1.84390889145858, 1.91287503750007, 2, 1.58244501686629, 0.961775139235799, - 1.67903900932887, 18, 1.84390889145858, 1.91287503750007, 1, - 1.58244501686629, 0.22985441247086, 1.76363892004825, 19, 1.84390889145858, - 1.91287503750007, 0, 1.58244501686629, 0.22985441247086, 1.87138377130906, - 20, 1.84390889145858, 1.91287503750007, 0, 1.58244501686629, - 0.22985441247086, 2.00265997698042, 21, 1.84390889145858, 1.91287503750007, - 1, 1.58244501686629, 0.22985441247086, 2.1569982806834, 22, 1.84390889145858)) + 1.60299994073407, 1.46250310836316, 1.52578416955645, 14, 1.53589529557661, + 1.43811745632331, 11, 1.41939979368434, 1.47211242437288, 1.54361561010075, + 15, 1.57249078621379, 1.91287503750007, 6, 1.62928079660054, + 1.40088808515865, 1.57221038715823, 16, 1.84390889145858, 1.91287503750007, + 1, 1.62928079660054, 1.22842056165, 1.61611151602076, 17, 1.84390889145858, + 1.91287503750007, 2, 1.62928079660054, 0.961775139235806, 1.67903900932887, + 18, 1.84390889145858, 1.91287503750007, 1, 1.62928079660054, + 0.229854412468377, 1.76363892004825, 19, 1.84390889145858, 1.91287503750007, + 0, 1.62928079660054, 0.229854412468377, 1.87138377130906, 20, + 1.84390889145858, 1.91287503750007, 0, 1.62928079660054, 0.229854412468377, + 2.00265997698042, 21, 1.84390889145858, 1.91287503750007, 1, + 1.62928079660054, 0.229854412468377, 2.1569982806834, 22, 1.84390889145858 + )) }) @@ -84,7 +84,7 @@ options <- list(.meta = list(variables = list(hasTypes = TRUE, variables = c("V1", "V2", "V3", "V4"), variables.types = c("nominal", "nominal", "nominal", "nominal")) -results <- runAnalysis("standardErrorOfMeasurement", dataset = "binaryTestDt.csv", options = options) +results <- runAnalysis("standardErrorOfMeasurement", dataset = testthat::test_path("binaryTestDt.csv"), options = options, makeTests = FALSE) test_that("Standard error of measurement table results match", { table <- results[["results"]][["semMainContainer"]][["collection"]][["semMainContainer_coefficientTable"]][["data"]] @@ -119,17 +119,18 @@ options <- list(.meta = list(variables = list(hasTypes = TRUE, results <- runAnalysis("standardErrorOfMeasurement", data = testthat::test_path("binaryTestDt.csv"), options = options, makeTests = F) -test_that("Sum score CI table results match", { +test_that("Sum Score CI Table results match", { table <- results[["results"]][["semMainContainer"]][["collection"]][["semMainContainer_ciTable"]][["data"]] jaspTools::expect_equal_tables(table, - list(-0.0853758863090898, -0.0771097189955713, 0, 0, 0.0853758863090898, - 0.0771097189955713, 0, 0.91462411369091, 0.922890281004429, 0.888491541244813, - 1, 1.08537588630909, 1.07710971899557, 1.11150845875519, 1.87104202115792, - 1.87226439925586, 1.8634305870228, 2, 2.12895797884208, 2.12773560074414, - 2.1365694129772, 2.87297101344401, 2.87413111981302, 2.8634305870228, - 3, 3.12702898655599, 3.12586888018698, 3.1365694129772, 3.88445146704636, - 3.88566143267109, 3.88849154124481, 4, 4.11554853295364, 4.11433856732891, - 4.11150845875519, 5, 5, 5, 5, 5, 5, 5)) + list(-0.0853758863090898, -0.0854278968697352, 0, 0, 0.0853758863090898, + 0.0854278968697352, 0, 0.91462411369091, 0.914572103130265, + 0.888491541244813, 1, 1.08537588630909, 1.08542789686974, 1.11150845875519, + 1.87104202115792, 1.86828037011968, 1.8634305870228, 2, 2.12895797884208, + 2.13171962988032, 2.1365694129772, 2.87297101344401, 2.87024411426061, + 2.8634305870228, 3, 3.12702898655599, 3.12975588573939, 3.1365694129772, + 3.88445146704636, 3.88331172201698, 3.88849154124481, 4, 4.11554853295364, + 4.11668827798302, 4.11150845875519, 5, 4.93833944832921, 5, + 5, 5, 5.06166055167079, 5)) }) test_that("Sum score CI plots matches for ", { diff --git a/tests/testthat/test-unidimensionalReliabilityFrequentist.R b/tests/testthat/test-unidimensionalReliabilityFrequentist.R index 253bc047..60859c52 100644 --- a/tests/testthat/test-unidimensionalReliabilityFrequentist.R +++ b/tests/testthat/test-unidimensionalReliabilityFrequentist.R @@ -173,8 +173,8 @@ test_that("Frequentist Scale Reliability Statistics table results match", { options("jaspRoundToPrecision" = NULL) # reset default } else if (jaspBase::getOS() == "osx") { jaspTools::expect_equal_tables(table, - list("Coefficient ", 0.791710063361508, 0.694692772995628, - 0.0405022504460226, 0.852159859484347)) + list("McDonald's ", 0.791710063361508, 0.67994307197584, 0.0454087394703138, + 0.848430313668237)) } })