DESCRIPTION

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Package: thu12feb05
Type: Package
Title: Making sense of transcriptomics data
Version: 0.1.2
Date: 11 April 2015
Author: Raffaele Calogero
Maintainer: Raffaele A Calogero <raffaele.calogero@unito.it>
Depends:  Biobase, TxDb.Mmusculus.UCSC.mm9.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, Mus.musculus, TxDb.Hsapiens.UCSC.hg19.knownGene, Homo.sapiens, EBSeq, goseq, DEGraph, ToPASeq, Rgraphviz, geecc, GOexpress, GSVA, SeqGSEA, CoCiteStats, Gviz, GOstats, TxDb.Hsapiens.UCSC.hg38.knownGene, annotate
Description: EMBL Course Analysis and integration of transcriptome and proteome data. Practical session on making sense of transcriptomics data 
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Package: chimera
Type: Package
Title: A package for secondary analysis of fusion products
Version: 1.19.0
Date: 31 March 2015
Author: Raffaele A Calogero, Matteo Carrara, Marco Beccuti, Francesca Cordero 
Maintainer: Raffaele A Calogero <raffaele.calogero@unito.it>
Depends:  Biobase, GenomicRanges (>= 1.13.3), Rsamtools (>= 1.13.1), GenomicAlignments, methods, AnnotationDbi, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, Homo.sapiens
Suggests: BiocParallel, geneplotter
Enhances: Rsubread, BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene, BSgenome.Mmusculus.UCSC.mm10, TxDb.Mmusculus.UCSC.mm10.knownGene, Mus.musculus, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene
Description: This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders:  chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.
biocViews: Infrastructure
SystemRequirements: STAR, TopHat, bowtie and samtools are required for some functionalities 
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License: Artistic-2.0