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Commit 9173364

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fix fmt
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-1
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workflow/rules/ome_zarr.smk

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@@ -92,7 +92,7 @@ rule ome_zarr_to_nii:
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input:
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zarr=get_input_ome_zarr_to_nii,
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params:
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zarrnii_kwargs={}
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zarrnii_kwargs={},
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output:
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nii=bids(
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root=resampled,

workflow/scripts/generate_volume_qc.py

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@@ -8,6 +8,7 @@
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import zarr
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from lib.cloud_io import get_fsspec, is_remote
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from upath import UPath as Path
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from zarrnii import ZarrNii
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# directory containing the volume rendering files

workflow/scripts/ome_zarr_to_nii.py

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from dask.diagnostics import ProgressBar
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from zarrnii import ZarrNii
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znimg = ZarrNii.from_ome_zarr(

workflow/scripts/zarr_to_ome_zarr.py

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@@ -5,6 +5,7 @@
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from dask.diagnostics import ProgressBar
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from lib.cloud_io import get_fsspec, is_remote
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from upath import UPath as Path
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from zarrnii import ZarrNii
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in_zarr = snakemake.input.zarr

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