diff --git a/workflow/scripts/imaris_channel_to_zarr.py b/workflow/scripts/imaris_channel_to_zarr.py index 32b6718..45ad555 100644 --- a/workflow/scripts/imaris_channel_to_zarr.py +++ b/workflow/scripts/imaris_channel_to_zarr.py @@ -44,14 +44,14 @@ def print_tree_item(name, obj): ].shape ) -# zarr.copy( -# source[ -# "DataSet/ResolutionLevel 0/TimePoint 0/Channel {chan}/Data".format( -# chan=snakemake.params.channel -# ) -# ], -# dest, -# log=stdout, -# compressor=None, -# ) +zarr.copy( + source[ + "DataSet/ResolutionLevel 0/TimePoint 0/Channel {chan}/Data".format( + chan=snakemake.params.channel + ) + ], + dest, + log=stdout, + compressor=None, +) source.close()