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general/schedule.html

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@@ -40,7 +40,7 @@ <h1 dir="auto" id="schedule">Schedule</h1>
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<td>8-10</td>
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<td>FD5</td>
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<td><oth>L1</oth></td>
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<td><oth>Introduction to course;</oth> <sf>Genome features [SV 1, 2]</sf></td>
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<td><oth>Introduction to course;</oth> <sf>Genome features</sf></td>
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<td>AA, OE, LK; OE</td>
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</tr>
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<tr dir="auto">
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<td>15-17</td>
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<td>FD5</td>
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<td><sf>L9</sf></td>
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<td><sf>Sequence motifs and logos, PSSMs [17.1, 17.2, 18.3]</sf></td>
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<td><sf>Sequence motifs and logos, PSSMs [MK 17.1, 17.2, 18.3]</sf></td>
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<td>OE</td>
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</tr>
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<tr dir="auto">
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<td>09-19</td>
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<td>13-15</td>
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<td>FD5</td>
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<td><sf>L10</sf></td>
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<td><sf>Eukaryotic gene prediction, protein sequence features [MK 7.1-7.4, 7.6, 9.2-9.5]</sf></td>
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<td><sf>Hidden Markov models, Key applications of HMMs [K 13, MK 7.1-7.4, 7.6, 9.2-9.4, 16.2, web resource]</sf></td>
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<td>OE</td>
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</tr>
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<tr dir="auto">
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<td>8-10</td>
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<td>FD5</td>
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<td><sf>L11</sf></td>
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<td><sf>Profile HMMs [K 13, MK 16.2], Predictive discriminative models [web resource]</sf></td>
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<td><sf>Protein features, Predictive discriminative models [K 13; MK 7.1-7.4, 7.6, 9.2-9.4, web resource]</sf></td>
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<td>OE</td>
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</tr>
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<tr dir="auto">
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<td>10-12</td>
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<td>FD5</td>
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<td><phyl>L13</phyl></td>
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<td><phyl>Phylogenetic distance [SV 6, 7]</phyl></td>
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<td><phyl>Phylogenetic distance</phyl></td>
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<td>AA</td>
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</tr>
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<tr dir="auto">
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<td>10-12</td>
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<td>K2</td>
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<td><phyl>L14</phyl></td>
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<td><phyl>Phylogenetic tree algorithms I [SV 6, 7, X p150-165]</phyl></td>
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<td><phyl>Phylogenetic tree algorithms I [X p150-165]</phyl></td>
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<td>AA</td>
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</tr>
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<tr dir="auto">
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<td>10-03</td>
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<td>10-12</td>
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<td>FD5</td>
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<td><phyl>L15</phyl></td>
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<td><phyl>Phylogenetic tree algorithms II [SV 6, 7, X p150-165]</phyl></td>
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<td><phyl>Phylogenetic tree algorithms II [X p150-165]</phyl></td>
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<td>AA</td>
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</tr>
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<tr dir="auto">

general/schedule.md

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@@ -10,7 +10,7 @@ phyl { background:#C9DAF8; color: black;}
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| Date | Time | Place | Activity | Content | Responsible |
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|--------|--------------|--------------------------------------|-------------------------------------------------------------|-----------------------------------------------------------------------------------------------------------------------------|------------------|
13-
| 08-26 | 8-10 | FD5 | <oth>L1</oth> | <oth>Introduction to course;</oth> <sf>Genome features [SV 1, 2]</sf> | AA, OE, LK; OE |
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| 08-26 | 8-10 | FD5 | <oth>L1</oth> | <oth>Introduction to course;</oth> <sf>Genome features</sf> | AA, OE, LK; OE |
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| 08-28 | 8-10 | FD5 | <ali>L2</ali> | <ali>Introduction to alignments [K 1,2]</ali> | LK |
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| 08-29 | 8-12 | Sporthallen, Grå, Karmosin, Magenta | <oth>LAB_P1</oth> | <oth>Python programming intro</oth> | TAs |
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| 08-29 | 15-17 | FD5 | <ali>L3</ali> | <ali>Algorithms for pairwise alignments [K 3,5,7]</ali> | LK |
@@ -28,19 +28,19 @@ phyl { background:#C9DAF8; color: black;}
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| 09-12 | 8-10 | FD5 | <cncl></cncl> | <cncl>Reserve, TBA if needed</cncl> | |
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| | | | | | |
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| 09-16 | 8-12 | Spelhallen, Vit, xxx | <cncl></cncl> | <cncl>Reserve, TBA if needed</cncl> | |
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| 09-16 | 15-17 | FD5 | <sf>L9</sf> | <sf>Sequence motifs and logos, PSSMs [17.1, 17.2, 18.3]</sf> | OE |
32-
| 09-19 | 13-15 | FD5 | <sf>L10</sf> | <sf>Eukaryotic gene prediction, protein sequence features [MK 7.1-7.4, 7.6, 9.2-9.5]</sf> | OE |
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| 09-16 | 15-17 | FD5 | <sf>L9</sf> | <sf>Sequence motifs and logos, PSSMs [MK 17.1, 17.2, 18.3]</sf> | OE |
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| 09-19 | 13-15 | FD5 | <sf>L10</sf> | <sf>Hidden Markov models, Key applications of HMMs [K 13, MK 7.1-7.4, 7.6, 9.2-9.4, 16.2, web resource]</sf> | OE |
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| | | | | | |
34-
| 09-22 | 8-10 | FD5 | <sf>L11</sf> | <sf>Profile HMMs [K 13, MK 16.2], Predictive discriminative models [web resource]</sf> | OE |
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| 09-22 | 8-10 | FD5 | <sf>L11</sf> | <sf>Protein features, Predictive discriminative models [K 13; MK 7.1-7.4, 7.6, 9.2-9.4, web resource]</sf> | OE |
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| 09-22 | 13-15 | FD5 | <cncl></cncl> | <cncl>Reserve, TBA if needed</cncl> | |
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| 09-24 | 13-15 | FD5 | <sf>L12</sf> | <sf>Clustering [MK 15.13, Sherlock]</sf> | OE |
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| 09-25 | 15-17 | FD5 | <cncl></cncl> | <cncl>Reserve, TBA if needed</cncl> | |
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| | | | | | |
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| 09-29 | 10-12 | FD5 | <phyl>L13</phyl> | <phyl>Phylogenetic distance [SV 6, 7]</phyl> | AA |
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| 09-29 | 10-12 | FD5 | <phyl>L13</phyl> | <phyl>Phylogenetic distance</phyl> | AA |
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| 09-29 | 8-12 | Brun, Spelhallen, Karmosin | <oth>LAB_B3</oth> | <oth>Protein sequence feature prediction, MSA and phylogenetics</oth> | TAs |
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| 09-30 | 8-10 | FD5 | <cncl></cncl> | <cncl>Reserve, TBA if needed</cncl> | |
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| 10-01 | 10-12 | K2 | <phyl>L14</phyl> | <phyl>Phylogenetic tree algorithms I [SV 6, 7, X p150-165]</phyl> | AA |
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| 10-03 | 10-12 | FD5 | <phyl>L15</phyl> | <phyl>Phylogenetic tree algorithms II [SV 6, 7, X p150-165]</phyl> | AA |
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| 10-01 | 10-12 | K2 | <phyl>L14</phyl> | <phyl>Phylogenetic tree algorithms I [X p150-165]</phyl> | AA |
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| 10-03 | 10-12 | FD5 | <phyl>L15</phyl> | <phyl>Phylogenetic tree algorithms II [X p150-165]</phyl> | AA |
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| | | | | | |
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| 10-07 | 8-12 | Gul, Grå, Karmosin, Magenta | <oth>LAB_P4</oth> | <oth>Programming phylogenetics</oth> | TAs |
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| 10-08 | 8-10 | B2 | <oth>L16</oth> | <oth>Questions &amp; Answers session</oth> | AA, OE, LK |

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