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_pkgdown.yml
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reference:
- title: "Fit LDA models to data for specified K's"
- contents:
- run_lda_models
- title: "Alignment function"
- contents:
- align_topics
- title: "Visualization and diagnostics functions"
- contents:
- plot_alignment
- plot_beta
- compute_number_of_paths
- plot_number_of_paths
- title: "Alignment class and related functions"
- contents:
- alignment-class
- show,alignment-method
- plot,alignment,missing-method
- models,alignment-method
- weights,alignment-method
- topics,alignment-method
- n_models,alignment-method
- n_topics,alignment-method
- title: "Helper functions"
- contents:
- align_graph
- setup_edges
- product_weights
- transport_weights
- trim_betas
- title: "Demo data"
- contents:
- vm_data
articles:
- title: Demos
navbar: Demos
contents:
- basic-alignment
- microbiome-demo
- title: Simulations
navbar: Simulations
contents:
- lda
- background-noise
- strain-switching
- title: Profiling
navbar: Profiling
contents:
- timing