scripts

Author: myhome98304

MCL.sh

@@ -12,7 +12,7 @@ help()
 	echo "rand_seed			: random seed number"
 }
 
-QUERY="java -jar bin/PS-MCL.jar -mcl $1 $2 -hem 0 0 -basic 1 $3 0"
+QUERY="java -jar bin/PS-MCL.jar -mcl $1 $2 -hem 0 0 -basic 1 $3 $4"
 
 echo $QUERY
 echo =====================

MLR-MCL.sh

@@ -8,15 +8,14 @@ help()
     echo "B-MCL : Balanced Regularized Markov Clustering"
     echo " "
     echo "Usage: $0 [INPUT (Graph File)] [OutputPath] [Coarse Level] [Balance Factor] [epsilon] [rand_seed]"
-    echo "CoarseMode        : -sc or -hem"
     echo "Coarse Level      : non-negative Integer"
     echo "Balance Factor    : non-negative Double"
 	echo "epsilon			: run until the error is under epsilon"
 	echo "rand_seed			: random seed number"
 }
 
 
-QUERY="java -jar bin/PS-MCL.jar -mcl $1 $2 -hem $3 $4 -reg 1 $5 0"
+QUERY="java -jar bin/PS-MCL.jar -mcl $1 $2 -hem $3 $4 -reg 1 $5 $6"
 
 
 

src/mcl/MCL.java

@@ -1020,6 +1020,7 @@ else if (args[6].equals("-basic"))
 				numThread = Integer.parseInt(args[7]);
 			} catch (Exception e) {
 				System.out.println("Please set the number of thread");
+				return;
 			}
 			if (numThread < 1) {
 				System.out.println("# of Threads should be non-negative");
@@ -1030,7 +1031,8 @@ else if (args[6].equals("-basic"))
 			try {
 				elipson = Double.parseDouble(args[8]);
 			} catch (Exception e) {
-				System.out.println("Please set the threshlod for stop MCL");
+				System.out.println("Please set threshlod to stop MCL");
+				return;
 			}
 			if (numThread < 0) {
 				System.out.println("Please set positive threshold");
@@ -1041,7 +1043,7 @@ else if (args[6].equals("-basic"))
 			try {
 				seed = Integer.parseInt(args[9]);
 			} catch (Exception e) {
-				System.out.println("Please set the random seed number");
+				System.out.println("Using random seed");
 			}
 
 			double skiprate=0.5;
@@ -1050,7 +1052,8 @@ else if (args[6].equals("-basic"))
 				try {
 					skiprate = Double.parseDouble(args[10]);
 				} catch (Exception e) {
-					System.out.println("Please set the threshlod for stop MCL");
+					System.out.println("Using default skip rate = 0.5");
+					
 				}
 				if( skiprate <= 0 || skiprate >=1) {
 					System.out.println("Please set skip rate between 0 to 1 ");
@@ -1097,7 +1100,8 @@ else if(args[4].equals("-col"))
 				}
 
 				ClusterMeasure cm;
-				cm = new ClusterMeasure(args[1], args[2], args[3], type, max, min);									
+				cm = new ClusterMeasure(args[1], args[2], args[3], type, max, min);
+				System.out.println();
 				System.out.println("Accuracy : " + cm.Accuracy());
 			}	
 		}