I'm going through the BED output of minigraph --call and came across the following line:
CHM13#1#chr1 24146 25181 >s6 >s14 >s7>s8>s170090>s10>s11<s179323:753:+:Th_009#1#ptg000058l:26516:29584
What this line means is that the path >s7>s8>s170090>s10>s11<s179323 has a length of 753 nucleotides. However, when you look at the coordinates on the contig, it seems that this path has a much longer length of ~3Kbp.
I noticed that these contig coordinates are approximate, but is such a deviation (753 vs 3,000 bp) expected? Could it mean that this path is repeated over and over again across this region on the contig?
I'm going through the BED output of
minigraph --calland came across the following line:What this line means is that the path
>s7>s8>s170090>s10>s11<s179323has a length of 753 nucleotides. However, when you look at the coordinates on the contig, it seems that this path has a much longer length of ~3Kbp.I noticed that these contig coordinates are approximate, but is such a deviation (753 vs 3,000 bp) expected? Could it mean that this path is repeated over and over again across this region on the contig?