Fix CI

Author: manuhuth

.github/workflows/R-CMD-check.yaml

@@ -1,7 +1,5 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
-# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+# Derived from https://github.com/r-lib/actions/tree/v2/examples
+# Help debugging: https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
     branches: [main, master]
@@ -12,80 +10,72 @@ name: R-CMD-check
 
 jobs:
   R-CMD-check:
-    runs-on: ${{ matrix.config.os }}
+    runs-on: ${{ matrix.os }}
 
-    name: ${{ matrix.config.os }} (${{ matrix.config.r }}, Julia ${{ matrix.config.julia }})
+    name: "${{ matrix.os }} (R-${{ matrix.r }}, Julia-${{ matrix.julia }})"
 
     strategy:
       fail-fast: false
       matrix:
-        config:
-          - {os: macos-latest,   r: 'release', julia: '1.9'}
-          - {os: macos-latest,   r: 'devel', julia: '1.9', http-user-agent: 'release'}
-          - {os: macos-latest,   r: 'oldrel-1', julia: '1.9'}
-          - {os: ubuntu-latest,   r: 'devel', julia: '1.9', http-user-agent: 'release'}
-          - {os: ubuntu-latest,   r: 'release', julia: '1.9'}
-          - {os: ubuntu-latest,   r: 'oldrel-1', julia: '1.9'}
-          - {os: windows-latest,   r: 'devel', julia: '1.9', http-user-agent: 'release'}
-          - {os: windows-latest,   r: 'release', julia: '1.9'}
-          - {os: windows-latest,   r: 'oldrel-1', julia: '1.9'}
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        r: ['release', 'devel', 'oldrel-1']
+        julia: ['1.9']
+        include:
+          - os: windows-latest
+            r: 'devel'
+            http-user-agent: 'release'
+          - os: ubuntu-latest
+            r: 'devel'
+            http-user-agent: 'release'
+          - os: macos-latest
+            r: 'devel'
+            http-user-agent: 'release'
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       R_KEEP_PKG_SOURCE: yes
-      R_LIBS_USER: C:\Temp\Library
       RSPM: https://packagemanager.posit.co/cran/latest
       RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest
       TZ: UTC
       _R_CHECK_SYSTEM_CLOCK_: FALSE
       NOT_CRAN: true
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-pandoc@v2
 
       - uses: r-lib/actions/setup-r@v2
         with:
-          r-version: ${{ matrix.config.r }}
-          http-user-agent: ${{ matrix.config.http-user-agent }}
+          r-version: ${{ matrix.r }}
+          http-user-agent: ${{ matrix.http-user-agent }}
           use-public-rspm: true
-          
-      - name: Cache R packages and Julia packages
-        uses: actions/cache@v3
-        with:
-          path: | 
-            ${{ env.R_LIBS_USER }}/*
-            !${{ env.R_LIBS_USER }}/pak
-            ~/.julia/artifacts/
-            ~/.julia/packages/
-          key: ${{ matrix.config.r }}-${{ matrix.config.julia }}-${{ hashFiles('DESCRIPTION') }}
-          
+
       - uses: julia-actions/setup-julia@v1
         with:
-          version: ${{ matrix.config.julia }}
-          
-      - name: Add dsBaseClient repository
+          version: ${{ matrix.julia }}
+
+      - name: Cache R & Julia packages
+        uses: actions/cache@v4
+        with:
+          path: |
+            ~/.local/share/R/*
+            ~/R/*
+            ~/.julia/packages
+            ~/.julia/artifacts
+          key: ${{ runner.os }}-R${{ matrix.r }}-Julia${{ matrix.julia }}-${{ hashFiles('DESCRIPTION') }}
+
+      - name: Install Julia dependencies
         run: |
-          install.packages("JuliaConnectoR")
-          strings1 <- c('"Random"', '"Distributions"', 
-                        '"ForwardDiff"', '"Optim"', '"StatsBase"',
-                        '"LineSearches"', '"LinearAlgebra"')
-          strings2 <- c("Random", "Distributions", 
-                        "ForwardDiff", "Optim", "StatsBase",
-                        "LineSearches", "LinearAlgebra")
-          for (i in 1:length(strings1)){
-            if (!JuliaConnectoR::juliaEval(paste0(strings1[i], ' in keys(Pkg.project().dependencies)'))){
-              JuliaConnectoR::juliaEval("using Pkg")
-              JuliaConnectoR::juliaEval(paste0('Pkg.add("', strings2[i], '")') )
-            }
-          }
-        shell: Rscript {0}
+          julia -e '
+            using Pkg
+            Pkg.add(["Random", "Distributions", "ForwardDiff", "Optim", "StatsBase",
+                     "LineSearches", "LinearAlgebra", "FreqTables", "DataFrames"])
+          '
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           extra-packages: any::rcmdcheck
-          needs: check
 
       - uses: r-lib/actions/check-r-package@v2
         with:

coconots.Rproj

@@ -1,5 +1,4 @@
 Version: 1.0
-ProjectId: 3cbf8a48-e69b-4284-9def-c734aebb6a48
 
 RestoreWorkspace: Default
 SaveWorkspace: Default