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README.md

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# Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation
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<div>
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<img src="images/figure2.png" width="600" alt="figure2"></img>
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</div>
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## Results
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DS, NSD, HD, and CD represents Dice score, normalised surface Dice, 95%
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Hausdorff Distance, and centroid distance. The mean and standard deviations
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values are reported.
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:tada: This work has been accepted at
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[Deep Generative Models workshop at MICCAI 2023](https://dgm4miccai.github.io/).
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### Prostate MR Data Set
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:bookmark_tabs: An updated manuscript has also been uploaded at
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[arXiv](https://arxiv.org/abs/2303.06040).
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| Model | Diffusion Model | DS | NSD | HD | CD |
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| :---- | :-------------- | :------------ | :------------ | :------------ | :------------ |
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| 2D | No | 0.831 (0.098) | 0.638 (0.113) | 6.044 (1.031) | 2.824 (1.239) |
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| 2D | Yes | 0.818 (0.102) | 0.615 (0.118) | 6.658 (0.839) | 3.012 (1.174) |
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| 3D | No | 0.838 (0.088) | 0.648 (0.110) | 5.197 (1.184) | 2.675 (0.927) |
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| 3D | Yes | 0.830 (0.094) | 0.626 (0.112) | 5.424 (1.176) | 3.009 (1.165) |
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:mag_right: We are working on a follow-up work, stay tuned.
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### Abdominal CT Data Set
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<div>
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<img src="images/method_x0.png" width="600" alt="figure2"></img>
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</div>
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| Model | Diffusion Model | DS | NSD | HD | CD |
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| :---- | :-------------- | :------------ | :------------ | :------------- | :------------ |
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| 3D | Yes | 0.801 (0.109) | 0.540 (0.095) | 9.125 (2.564) | 4.836 (2.273) |
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| 2D | Yes | 0.769 (0.127) | 0.520 (0.091) | 12.039 (2.932) | 5.121 (2.102) |
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| 3D | No | 0.816 (0.100) | 0.596 (0.084) | 9.091 (2.475) | 4.275 (1.870) |
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| 2D | No | 0.804 (0.109) | 0.577 (0.082) | 9.885 (2.587) | 4.416 (1.914) |
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<div>
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<img src="images/figure2.png" width="600" alt="figure2"></img>
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</div>
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### Reproduction
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## Reproduction
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Install the environment and build the dataset following the documentation. Then
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run one of the following sets of commands.
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## Acknowledgement
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This work was supported by the Wellcome/EPSRC Centre for Interventional and
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Surgical Sciences (203145Z/16/Z), the EPSRC funded Centre for Doctoral Training
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in Intelligent, Integrated Imaging in Healthcare (i4Health) (EP/S021930/1), the
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EPSRC grant EP/T029404/1), the International Alliance for Cancer Early
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Detection, an alliance between Cancer Research UK [C28070/A30912;
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C73666/A31378], Canary Center at Stanford University, the University of
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Cambridge, OHSU Knight Cancer Institute, University College London and the
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University of Manchester, and Cloud TPUs from Google's TPU Research Cloud (TRC).
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This work was supported by the EPSRC grant (EP/T029404/1), the Wellcome/EPSRC
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Centre for Interventional and Surgical Sciences (203145Z/16/Z), the
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International Alliance for Cancer Early Detection, an alliance between Cancer
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Research UK (C28070/A30912, C73666/A31378), Canary Center at Stanford
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University, the University of Cambridge, OHSU Knight Cancer Institute,
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University College London and the University of Manchester, and Cloud TPUs from
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Google’s TPU Research Cloud (TRC).

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