Workflow (folder) structure #6
Description
What is the optimal/idiomatic way to separate process specific content(scripts/environments.yml/container.def) into a good folder structure?
Is it better to type the scripts within the process, then the script files don't need to be provided as inputs.
Or should we use template scripts and put them in the template folder? Or should the template scripts be part of the process specific folder? This requires us to specify absolute paths for the template scripts, which is not recommended by nextflow documentation.