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‎README.md

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# Second Annual Data Science Bowl
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Code for Second Annual Data Science Bowl.
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Code for [Second Annual Data Science Bowl](). 16th place.
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# Sumamry
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A Hybrid Deep CNN/MLP based approach.
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It is used only 3 sax slices to predict real volume, is not used segmentation technique, is not needed hand-labeling.
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A Hybrid Deep CNN/MLP.
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It is used only 3 sax slices to predict the actual volume, is not used segmentation techniques, is not needed hand-labelings.
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![neural network](./figure.png)
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Detail: [simple locatlization](TODO), [neural network definition](TODO), [cumulative distribution function](TODO), [model ensemble and bagging](TODO).
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## Developer Environment
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- Ubuntu 14.04
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- 16GB RAM
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- 12GB RAM
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- GPU & CUDA (I used EC2 g2.2xlarge instance)
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- [Torch7](http://torch.ch/)
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- Ruby
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## Installation
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Install CUDA, Torch7 first.
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Install CUDA and Torch7 first. See [NVIDIA CUDA Getting Started Guide for Linux](http://docs.nvidia.com/cuda/cuda-getting-started-guide-for-linux/#abstract) and [Getting started with Torch](http://torch.ch/docs/getting-started.html).
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```
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sudo apt-get install libgraphicsmagick-dev ruby rubygems
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sudo gem install dicom
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luarocks install graphicsmagick
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```
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## Data
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Place the [data files](https://www.kaggle.com/c/second-annual-data-science-bowl/data) into a subfolder ./data.
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```
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% ls ./data
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test train train.csv validate validate.csv
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```
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## For validation set
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./run_all.sh
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./run_all_test.sh
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NOTICE: I used 8 g2.xlarge instances to execute this script. See comments in `./run_all_test.sh`
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NOTICE: I used 8 g2.xlarge instances to execute this script. See comments in `./run_all_test.sh`.

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