Skip to content

Does the official checkpoint "epoch=399-step=23200.ckpt" of the virtual stainng model VSCyto2D supported for fine-tune? #346

@chooooock

Description

@chooooock

Thanks for the outstanding works!
On the quick_start.py we can see that this checkpoint realted to the model of FcmaeUNet(from viscy\translation\engine.py). When I try to fine-tune this checkpoint with the GPUTransformDataModule and CombinedDataModule( the data requirements described in the sourcecode in FcmaeUNet), I have to modify the sourcecode of the HCSDataModule(form viscy\data\hcs.py).
I still comes with some error about data matching even though I have changed the HCSDataModule strucutre.
Does this checkpoint was supported for fine-tune? Are there any script for this task?

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions