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BioGenie changelog

Releases:

1.4.0 (April 23th, 2026)

  • Print number of sequence headers function added.

1.3.0 (April 20th, 2026)

  • Conda support for multiple platforms.
  • K-mer Frequency Analysis function added.
  • Small formating bugs fixed.

1.2.2 (March 24th, 2026)

  • Issue (#50) fixed.

1.2.0 (March 24th, 2026)

  • Quality control for FASTQ files added.
  • Conda support added.
  • Minor bugs fixed.

1.1.0 (March 6th, 2026)

  • Genome Coverage(x) added.
  • Genome Coverage(x) added in "-asmbl" pipeline.
  • FASTQ support added.
  • FASTQ to FASTA function added.
  • Major file-handling improvements made.
  • Documentation enhanced.

1.0.0 (March 3rd, 2026)

  • Issue (#42) fixed.
  • Documentation enhanced.
  • Minor bugs and formatting issues fixed.

Pre-release:

0.31.0 (February 22nd, 2026):

  • Pipeline Assemblystats added.
  • AT% added in GCCalc function.
  • Smith-Waterman PSA added.
  • Menu formatting fixed.
  • Minor bugs fixed.

0.30.2 (February 21st, 2026):

  • Fix minor formatting issues.

0.30.0 (February 19th, 2026):

  • Add custom threads selection.
  • Refactor pip2.
  • Rename pip2 to Nucleostats.
  • Rename pip3 to Proteostats.
  • Remove pip1.
  • Minor bugs fixed.

0.29.0 (February 18th, 2026):

  • Add the number of headers in a FASTA file in "-sh" function.
  • Issue (#37) fixed.
  • Minor bugs fixed.

0.28.0 (January 28th, 2026):

  • Pairwise Sequence Alignment with Needleman-Wunsch added.
  • Issue (#34) fixed.
  • Minor bugs fixed.

0.27.0 (January 25th, 2026):

  • Multi core support added for pip1, pip2 and pip3(#30), (#31).
  • Ambiguous bases statistics added.
  • Execution timer added.
  • Minor bugs fixed.

Older releases:

  • 0.26.0: Hydrogen bonds calculator and protein chain with color added.
  • 0.25.0: Protein mollecular weight, isoelectric point, extinction coeficient and pipeline 3 added. Issues #25, #27 fixed. Major performance improvements made. Minor bugs fixed.
  • 0.24.0: Motif search added. Issues #19, #21, #23, #24 fixed. Minor formatting issues fixed.
  • 0.23.0: DNA sequence with color added.
  • 0.22.0: Base Pair calculation added to Pipeline 2. Minor bugs fixed.
  • 0.21.0: Base Pair calculation added. Minor bugs fixed.
  • 0.20.0: Codon Usage Bias(CUB) calculation and export to csv function added.
  • 0.19.0: (#15) Minor bugs fixed.
  • 0.18.0: Generate mRNA FASTA added. Minor format bugs fixed.
  • 0.17.3: (#13) Issue Fixed.
  • 0.17.2: (#12) Issue Fixed.
  • 0.17.0: Generate cDNA FASTA and reverse compliment FASTA function added.
  • 0.16.0: Open Reading Frames finder function added. Minor bugs fixed.
  • 0.15.0: (#9) Fixed Melting Temperature Calculator functiion. SantaLucia 1998 nearest-neighbor method added as "-mt2". Pipeline 2 function also fixed. Now uses SantaLucia 1998 nearest-neighbor method for more accurate calculations. Minor bugs fixed.
  • 0.14.0: Coloured cDNA sequence. Minor adjustments made and bugs fixed.
  • 0.13.0: Purine/pyrimidine ratio and Melting temperature(Tm) calculator functions added. Preset Pipeline 2 added. Minor format fixes.
  • 0.12.2: Minor format fixes.
  • 0.12.0: (#7) Protein function output fixed, "Pipeline 1" added and minor bugs fixed.
  • 0.11.0: FASTA file verification and integrity checker added.
  • 0.10.0: (#6) FASTA sequence header print function added. DNA trimmer function added. Windows support added. Minor bugs fixed and quality of life improvements.
  • 0.9.0: Linux support added. FASTA sequencies separator added and minor bugs fixed.
  • 0.8.0: Protein chain option added and minor bugs fixed.
  • 0.7.0: (#4) Documentation fixed.
  • 0.6.0: (#3) Documentation added
  • 0.5.0: (#2) Function operator added.
  • 0.4.0: (#1) Reverse complement DNA function added.
  • 0.3.0: Number of codone calculator added.
  • 0.2.3: GC calculator, complimentary DNA and transcripted RNA functions added.
  • 0.1.0: First Version.