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Documentation/changelog.md

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# BioGenie changelog
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## Releases:
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### 1.1.0 (March Xth, 2026)
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### 1.1.0 (March 6th, 2026)
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- Genome Coverage(x) added.
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- Genome Coverage(x) added in "-asmbl" pipeline.
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- FASTQ support added.

README.md

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> [!NOTE]
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> _If you have any suggestions for new features or a bug encountered, create an Issue or send me a message at: mikeph526@outlook.com. I'm happy to help._
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## Examples
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## Testing
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Various tests have been performed to ensure scientific accuracy and the optimal computing performance. Everything involving unit testing can be found in this [repository](https://github.com/mikeph52/biogenie-test).
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### Examples
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In order to test BioGenie functions, example files are provided in the [sample fasta](sample_fasta) folder. In the table bellow, are all the necessary information about the said files.
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|Name|Description|NCBI Acc. Number|
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|pwa.fasta| A test file for PGSA testing|_Fictional_|
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|pwa2.fasta| A test file for PLSA testing|_Fictional_|
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## Testing
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Various tests have been performed to ensure scientific accuracy and the optimal computing performance. Everything involving unit testing can be found in this [repository](https://github.com/mikeph52/biogenie-test).
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## Installation
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### GNU Linux
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- Download BioGenie from Releases, or with wget:
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> This is an Alpha testing version. It is not functional. Not for scientific use. I don't think it is possible to make and maintain a gui version for windows. The code is complicated already. It's time to move on.
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## Changelog:
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### 1.1.0 (March Xth, 2026)
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### 1.1.0 (March 6th, 2026)
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- Genome Coverage(x) added.
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- Genome Coverage(x) added in "-asmbl" pipeline.
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- FASTQ support added.

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