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error: command 'x86_64-linux-gnu-gcc' failed with exit status 1 #19

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error: command 'x86_64-linux-gnu-gcc' failed with exit status 1#19
@mzeidhassan

Description

@mzeidhassan
mzeidhassan
opened on Jan 16, 2018

Hi DataCollection team,

I am trying to install DataCollection on a virtual machine with Ubuntu 16.04 LTS and I am getting this error after this command:

pip install -r requirements.txt

The default python version is 2.7. Could this be the issue?

Requirement already satisfied: setuptools in /usr/lib/python2.7/dist-packages (from cryptography==0.9->-r requirements.txt (line 6))
Installing collected packages: cryptography, Cython, html5lib, ipython, jsonrpc, jsonrpclib, numpy, langid, leveldb, line-profiler, lxml, munkres, pyOpenSSL, ndg-httpsclient, nltk, pexpect, pyrocksdb, regex, requests, scipy, simhash, simplejson, tldextract, Unidecode, urltools, xmltodict
Running setup.py install for cryptography ... error
Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;file='/tmp/pip-build-J0rEO1/cryptography/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-zdUJ7Z-record/install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.7
creating build/lib.linux-x86_64-2.7/cryptography
copying src/cryptography/init.py -> build/lib.linux-x86_64-2.7/cryptography
copying src/cryptography/fernet.py -> build/lib.linux-x86_64-2.7/cryptography
copying src/cryptography/x509.py -> build/lib.linux-x86_64-2.7/cryptography
copying src/cryptography/utils.py -> build/lib.linux-x86_64-2.7/cryptography
copying src/cryptography/exceptions.py -> build/lib.linux-x86_64-2.7/cryptography
copying src/cryptography/about.py -> build/lib.linux-x86_64-2.7/cryptography
creating build/lib.linux-x86_64-2.7/cryptography/hazmat
copying src/cryptography/hazmat/init.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat
creating build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings
copying src/cryptography/hazmat/bindings/init.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings
copying src/cryptography/hazmat/bindings/utils.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings
creating build/lib.linux-x86_64-2.7/cryptography/hazmat/backends
copying src/cryptography/hazmat/backends/init.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends
copying src/cryptography/hazmat/backends/interfaces.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends
copying src/cryptography/hazmat/backends/multibackend.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends
creating build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives
copying src/cryptography/hazmat/primitives/init.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives
copying src/cryptography/hazmat/primitives/hmac.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives
copying src/cryptography/hazmat/primitives/constant_time.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives
copying src/cryptography/hazmat/primitives/padding.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives
copying src/cryptography/hazmat/primitives/hashes.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives
copying src/cryptography/hazmat/primitives/serialization.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives
copying src/cryptography/hazmat/primitives/cmac.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives
creating build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/dsa.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/init.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/bignum.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/evp.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/ec.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/bio.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/hmac.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/ecdsa.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/engine.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/x509_vfy.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/x509.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/x509v3.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/conf.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/pkcs7.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/aes.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/crypto.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/x509name.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/opensslv.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/nid.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/binding.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/err.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/cms.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/rand.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/ssl.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/osrandom_engine.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/dh.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/pkcs12.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/asn1.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/ecdh.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/rsa.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/objects.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/cmac.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
copying src/cryptography/hazmat/bindings/openssl/pem.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl
creating build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/commoncrypto
copying src/cryptography/hazmat/bindings/commoncrypto/common_hmac.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/commoncrypto
copying src/cryptography/hazmat/bindings/commoncrypto/init.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/commoncrypto
copying src/cryptography/hazmat/bindings/commoncrypto/common_key_derivation.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/commoncrypto
copying src/cryptography/hazmat/bindings/commoncrypto/common_symmetric_key_wrap.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/commoncrypto
copying src/cryptography/hazmat/bindings/commoncrypto/secitem.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/commoncrypto
copying src/cryptography/hazmat/bindings/commoncrypto/common_cryptor.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/commoncrypto
copying src/cryptography/hazmat/bindings/commoncrypto/secimport.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/commoncrypto
copying src/cryptography/hazmat/bindings/commoncrypto/binding.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/commoncrypto
copying src/cryptography/hazmat/bindings/commoncrypto/cf.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/commoncrypto
copying src/cryptography/hazmat/bindings/commoncrypto/seckeychain.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/commoncrypto
copying src/cryptography/hazmat/bindings/commoncrypto/sectransform.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/commoncrypto
copying src/cryptography/hazmat/bindings/commoncrypto/common_digest.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/commoncrypto
copying src/cryptography/hazmat/bindings/commoncrypto/seckey.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/commoncrypto
creating build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/openssl
copying src/cryptography/hazmat/backends/openssl/dsa.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/openssl
copying src/cryptography/hazmat/backends/openssl/init.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/openssl
copying src/cryptography/hazmat/backends/openssl/ec.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/openssl
copying src/cryptography/hazmat/backends/openssl/hmac.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/openssl
copying src/cryptography/hazmat/backends/openssl/x509.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/openssl
copying src/cryptography/hazmat/backends/openssl/utils.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/openssl
copying src/cryptography/hazmat/backends/openssl/backend.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/openssl
copying src/cryptography/hazmat/backends/openssl/hashes.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/openssl
copying src/cryptography/hazmat/backends/openssl/ciphers.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/openssl
copying src/cryptography/hazmat/backends/openssl/rsa.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/openssl
copying src/cryptography/hazmat/backends/openssl/cmac.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/openssl
creating build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/commoncrypto
copying src/cryptography/hazmat/backends/commoncrypto/init.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/commoncrypto
copying src/cryptography/hazmat/backends/commoncrypto/hmac.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/commoncrypto
copying src/cryptography/hazmat/backends/commoncrypto/backend.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/commoncrypto
copying src/cryptography/hazmat/backends/commoncrypto/hashes.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/commoncrypto
copying src/cryptography/hazmat/backends/commoncrypto/ciphers.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/backends/commoncrypto
creating build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/twofactor
copying src/cryptography/hazmat/primitives/twofactor/init.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/twofactor
copying src/cryptography/hazmat/primitives/twofactor/hotp.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/twofactor
copying src/cryptography/hazmat/primitives/twofactor/totp.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/twofactor
creating build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/interfaces
copying src/cryptography/hazmat/primitives/interfaces/init.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/interfaces
creating build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/ciphers
copying src/cryptography/hazmat/primitives/ciphers/init.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/ciphers
copying src/cryptography/hazmat/primitives/ciphers/algorithms.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/ciphers
copying src/cryptography/hazmat/primitives/ciphers/base.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/ciphers
copying src/cryptography/hazmat/primitives/ciphers/modes.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/ciphers
creating build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/kdf
copying src/cryptography/hazmat/primitives/kdf/init.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/kdf
copying src/cryptography/hazmat/primitives/kdf/pbkdf2.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/kdf
copying src/cryptography/hazmat/primitives/kdf/hkdf.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/kdf
creating build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/asymmetric
copying src/cryptography/hazmat/primitives/asymmetric/dsa.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/asymmetric
copying src/cryptography/hazmat/primitives/asymmetric/init.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/asymmetric
copying src/cryptography/hazmat/primitives/asymmetric/ec.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/asymmetric
copying src/cryptography/hazmat/primitives/asymmetric/utils.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/asymmetric
copying src/cryptography/hazmat/primitives/asymmetric/padding.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/asymmetric
copying src/cryptography/hazmat/primitives/asymmetric/dh.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/asymmetric
copying src/cryptography/hazmat/primitives/asymmetric/rsa.py -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/asymmetric
running egg_info
writing requirements to src/cryptography.egg-info/requires.txt
writing src/cryptography.egg-info/PKG-INFO
writing top-level names to src/cryptography.egg-info/top_level.txt
writing dependency_links to src/cryptography.egg-info/dependency_links.txt
writing entry points to src/cryptography.egg-info/entry_points.txt
warning: manifest_maker: standard file '-c' not found

reading manifest file 'src/cryptography.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*' found under directory 'vectors'
writing manifest file 'src/cryptography.egg-info/SOURCES.txt'
creating build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/__pycache__
copying src/cryptography/hazmat/bindings/__pycache__/_Cryptography_cffi_26cb75b8x62b488b1.c -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/__pycache__
copying src/cryptography/hazmat/bindings/__pycache__/_Cryptography_cffi_590da19fxffc7b1ce.c -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/__pycache__
copying src/cryptography/hazmat/bindings/__pycache__/_Cryptography_cffi_e7d09016xc302a38b.c -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/__pycache__
creating build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/src
copying src/cryptography/hazmat/primitives/src/constant_time.c -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/src
copying src/cryptography/hazmat/primitives/src/constant_time.h -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/src
copying src/cryptography/hazmat/primitives/src/padding.c -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/src
copying src/cryptography/hazmat/primitives/src/padding.h -> build/lib.linux-x86_64-2.7/cryptography/hazmat/primitives/src
creating build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl/src
copying src/cryptography/hazmat/bindings/openssl/src/osrandom_engine.c -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl/src
copying src/cryptography/hazmat/bindings/openssl/src/osrandom_engine.h -> build/lib.linux-x86_64-2.7/cryptography/hazmat/bindings/openssl/src
running build_ext
building '_Cryptography_cffi_e7d09016xc302a38b' extension
creating build/temp.linux-x86_64-2.7
creating build/temp.linux-x86_64-2.7/src
creating build/temp.linux-x86_64-2.7/src/cryptography
creating build/temp.linux-x86_64-2.7/src/cryptography/hazmat
creating build/temp.linux-x86_64-2.7/src/cryptography/hazmat/bindings
creating build/temp.linux-x86_64-2.7/src/cryptography/hazmat/bindings/__pycache__
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c src/cryptography/hazmat/bindings/__pycache__/_Cryptography_cffi_e7d09016xc302a38b.c -o build/temp.linux-x86_64-2.7/src/cryptography/hazmat/bindings/__pycache__/_Cryptography_cffi_e7d09016xc302a38b.o
src/cryptography/hazmat/bindings/__pycache__/_Cryptography_cffi_e7d09016xc302a38b.c:504:6: error: conflicting types for ‘BIO_new_mem_buf’
 BIO *BIO_new_mem_buf(void *, int);
      ^
In file included from /usr/include/openssl/asn1.h:65:0,
                 from src/cryptography/hazmat/bindings/__pycache__/_Cryptography_cffi_e7d09016xc302a38b.c:219:
/usr/include/openssl/bio.h:692:6: note: previous declaration of ‘BIO_new_mem_buf’ was here
 BIO *BIO_new_mem_buf(const void *buf, int len);
      ^
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1

----------------------------------------

Command "/usr/bin/python -u -c "import setuptools, tokenize;file='/tmp/pip-build-J0rEO1/cryptography/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-zdUJ7Z-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-J0rEO1/cryptography/

Thanks,
Mohamed

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