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tools.html
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<!doctype html>
<html>
<head>
<!-- favicon -->
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<title>NeuroHub | Tools & Technologies</title>
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<meta name="description" content="NeuroHub - An Open Science Infrastructure for Reproducible, Collaborative, Multidisciplinary Scientific Research. This is the tools page for the website of the NeuroHub Project. ">
<meta name="keywords" content="Neuro, NeuroHub, Research, Big Data, Science, Medicine, Datalad">
<meta name="author" content="Derek Lo @ 3design-dlo.com">
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<h1 class="full-width text-center">Tools and Technologies</h1>
<div class="col-2 flex" data-aos="fade-right" data-aos-anchor-placement="top-bottom" data-aos-offset="100"><img src="images/infographic-tools.png" class="infographic" alt="Infographic of gears"></div>
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<!-- <h2>What tools and services will NeuroHub offer?</h2> -->
<p>NeuroHub provides a centralized toolbox equipped with the latest analytical capabilities, compatible with various modalities. Whether it be interactive computing through Jupyter Notebooks, statistical analysis using R, or well-defined execution pipelines launched on high-performance computing through CBRAIN, NeuroHub offers a connected platform that allows users to conduct research at whatever scale is necessary to answer their questions. Standardized data and metadata enables each of these tools to readily access data in NeuroHub.</p>
<p>The exact provenance and procedural aspects of research conducted through the platform is tracked, allowing work to be easily shared, reviewed and built upon.</p>
<!-- <p>NeuroHub will provide a toolbox equipped with the latest analytical capabilities, compatible with various modalities.</p>
<p>Standardized data and metadata will allow these tools able to readily access data in the NeuroHub. Users will be able to interact in several ways depending on their research, their computational needs, and the particular idiom in which they choose to work.</p>
<p>Whether it be interactive computing through technologies like Jupyter Notebooks, statistical analysis through tools like R, or well-defined execution pipelines launched on high-performance computing through CBRAIN, users will have full access to the data in a common platform that will allow them to conduct research at whatever scale is necessary to answer their questions.</p>
<p>The knowledge captured through work in NeuroHub will extend far beyond the study that is being immediately conducted so as to be completely reproducible and allow future research to build upon it.</p>
<p>All data and analytics in the platform will be enabled to track the exact provenance and procedural aspects of the research so that the work can be easily shared and reviewed in new interactive modalities of publication such as the emerging open publication platform Aperture, be immediately contributed back as derived data for future analysis, reproduced and validated through automated techniques, and be shared with others in a completely reproducible manner. In this way, NeuroHub will continue to grow its knowledge base rather than findings being lost in a sea of inaccessible, non-computable manuscripts and improve the quality and reliability of the science being produced.</p> -->
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</section>
<div class="clear-all"></div>
<!-- tools section -->
<section>
<div class="section-content flex card-holder">
<div class="card" data-aos="fade-in">
<img src="images/tools/boutiques.jpg" class="block-image" alt="Boutiques Logo">
<div class="card-name">Boutiques</div>
<div class="card-jobtitle">Boutiques is a tool to automatically publish, integrate, and execute applications across computational platforms. Boutiques applications are summarized in a simple yet rich JSON description, and enable the simulation, validation, evaluation, and application-specific monitoring of command-line tools.</div>
<a href="https://boutiques.github.io/">Boutiques Website</a>
</div>
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<img src="images/tools/cbrain.jpg" class="block-image" alt="CBRAIN logo">
<div class="card-name">CBRAIN</div>
<div class="card-jobtitle">CBRAIN is an infrastructure that connects researchers and data from all walks of science to high performance and cloud computing in an easy to manage, reproducible, and user-friendly manner.</div>
<a href="http://www.cbrain.ca">CBRAIN Website</a>
</div>
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<img src="images/tools/computecanada.jpg" class="block-image" alt="Compute Canada Logo">
<div class="card-name">Compute Canada</div>
<div class="card-jobtitle">Compute Canada enables Canadian researchers who need Advanced Research Computing (ARC) strategies in all disciplines and at all scales; from individual researchers to some of the largest international research collaborations in the world.</div>
<a href="http://www.computecanada.ca">Compute Canada Website</a>
</div>
<div class="card" data-aos="fade-in">
<img src="images/tools/datalad.png" class="block-image">
<div class="card-name">Datalad</div>
<div class="card-jobtitle">DataLad is a software tool developed to aid with everything related to the evolution of digital objects. It not only keeps track of code, data, and making sharing, retrieving and linking (meta-)data easy, but it assists with the combination of all things necessary in the digital workflow of data and science.</div>
<a href="https://www.datalad.org/">Datalad Website</a>
</div>
<div class="card" data-aos="fade-in">
<img src="images/tools/loris.png" class="block-image" alt="LORIS logo">
<div class="card-name">LORIS</div>
<div class="card-jobtitle">The Longitudinal Online Research and Imaging System (LORIS) is a web-based data and project management software for neuroimaging research studies. It is an open source framework for storing and processing behavioural, clinical, neuroimaging and genetic data. LORIS also makes it easy to manage large datasets acquired over time in a longitudinal study, or at different locations in a large multi-site study.</div>
<a href="http://loris.ca">LORIS Website</a>
</div>
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<img src="images/tools/osf.png" class="block-image" alt="OSF logo">
<div class="card-name">OSF</div>
<div class="card-jobtitle">OSF is a free and open source project management tool that supports researchers throughout their entire project lifecycle as a collaboration tool and workflow system.</div>
<a href="https://osf.io/">OSF Website</a>
</div>
<div class="card" data-aos="fade-in">
<img src="images/tools/jupyter.png" class="block-image" alt="JupyterHub logo">
<div class="card-name">JupyterHub</div>
<div class="card-jobtitle">JupyterHub brings the power of notebooks to groups of users by providing access to computational environments and resources without the burden of installation and maintenance tasks. Users - including students, researchers, and data scientists - can get their work done in their own workspaces on shared resources which can be managed efficiently by system administrators.</div>
<a href="https://jupyter.org/hub">JupyterHub Website</a>
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