diff --git a/docs/migrations/25-10.md b/docs/migrations/25-10.md index 5ed220b914..6c9b95a17b 100644 --- a/docs/migrations/25-10.md +++ b/docs/migrations/25-10.md @@ -194,14 +194,8 @@ See {ref}`cli-auth` and {ref}`cli-launch` for details. Nextflow now uses the [Nextflow plugin registry](https://registry.nextflow.io/) to download plugins in a more efficient and scalable manner. -The legacy plugin index can still be used by setting the `NXF_PLUGINS_REGISTRY_URL` environment variable: - -```bash -export NXF_PLUGINS_REGISTRY_URL="https://raw.githubusercontent.com/nextflow-io/plugins/main/plugins.json" -``` - :::{note} -Plugin developers will not be able to submit PRs to the legacy plugin index once the plugin registry is generally available. Plugins should be updated to publish to the Nextflow plugin registry using the {ref}`Nextflow Gradle plugin ` instead. See {ref}`plugin-registry-page` for details. +Plugins should be updated to publish to the Nextflow plugin registry using the {ref}`Nextflow Gradle plugin ` instead of the legacy plugin index. See {ref}`plugin-registry-page` for details. :::

New syntax for workflow handlers

diff --git a/docs/reference/env-vars.md b/docs/reference/env-vars.md index 15f6a18551..b302e26c4b 100644 --- a/docs/reference/env-vars.md +++ b/docs/reference/env-vars.md @@ -148,8 +148,6 @@ The following environment variables control the configuration of the Nextflow ru : Default `organization` prefix when looking for a hosted repository (default: `nextflow-io`). `NXF_PARAMS_FILE` -: :::{versionadded} 20.10.0 - ::: : Defines the path location of the pipeline parameters file . `NXF_PID_FILE` @@ -167,7 +165,7 @@ The following environment variables control the configuration of the Nextflow ru : The path where the plugin archives are loaded and stored (default: `$NXF_HOME/plugins`). `NXF_PLUGINS_REGISTRY_URL` -: :::{versionadded} 25.08.0-edge +: :::{versionadded} 25.10.0 ::: : Specifies the URL of the plugin registry used to download and resolve plugins. This allows using custom or private plugin registries instead of the default public registry. @@ -182,34 +180,32 @@ The following environment variables control the configuration of the Nextflow ru : Defines the default behavior of `publishDir.failOnError` setting. See {ref}`publishDir` directive for more information. `NXF_RETRY_POLICY_DELAY` -: :::{versionadded} 25.06.0-edge +: :::{versionadded} 25.10.0 ::: : Delay used for HTTP retryable operations (default: `350ms`). `NXF_RETRY_POLICY_JITTER` -: :::{versionadded} 25.06.0-edge +: :::{versionadded} 25.10.0 ::: : Jitter value used for HTTP retryable operations (default: `0.25`). `NXF_RETRY_POLICY_MAX_ATTEMPTS` -: :::{versionadded} 25.06.0-edge +: :::{versionadded} 25.10.0 ::: : Max number of attempts used for HTTP retryable operations (default: `5`). `NXF_RETRY_POLICY_MAX_DELAY` -: :::{versionadded} 25.06.0-edge +: :::{versionadded} 25.10.0 ::: : Max delay used for HTTP retryable operations (default: `90s`). `NXF_RETRY_POLICY_MULTIPLIER` -: :::{versionadded} 25.08.0-edge +: :::{versionadded} 25.10.0 ::: : Delay multiplier used for HTTP retryable operations (default: `2.0`). `NXF_SCM_FILE` -: :::{versionadded} 20.10.0 - ::: -: Defines the path location of the SCM config file . +: Defines the path location of the SCM config file. `NXF_SINGULARITY_CACHEDIR` : Directory where remote Singularity images are stored. When using a computing cluster it must be a shared folder accessible from all compute nodes.