You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I suggest to make it possible to run sintax instead of assignTaxonomy using all taxonomic databases currently supported by ampliseq. It should only be a matter of reformatting the headers in the fasta files, according to the description in the vsearch manual: The reference database must contain taxonomic information in the header of each sequence in the form of a string starting with ";tax=" and followed by a comma-separated list of up to eight taxonomic identifiers. Each taxonomic identifier must start with an indication of the rank by one of the letters d (for domain), k (kingdom), p (phylum), c (class), o (order), f (family), g (genus), or s (species). The letter is followed by a colon (:) and the name of that rank. Commas and semicolons are not allowed in the name of the rank. Example: ">X80725_S000004313;tax=d:Bacteria,p:Proteobacteria,c:Gammaproteobacteria, o:Enterobacteriales,f:Enterobacteriaceae,g:Escherichia/Shigella,s:Escherichia_coli".
The text was updated successfully, but these errors were encountered:
Description of feature
I suggest to make it possible to run sintax instead of assignTaxonomy using all taxonomic databases currently supported by ampliseq. It should only be a matter of reformatting the headers in the fasta files, according to the description in the vsearch manual:
The reference database must contain taxonomic information in the header of each sequence in the form of a string starting with ";tax=" and followed by a comma-separated list of up to eight taxonomic identifiers. Each taxonomic identifier must start with an indication of the rank by one of the letters d (for domain), k (kingdom), p (phylum), c (class), o (order), f (family), g (genus), or s (species). The letter is followed by a colon (:) and the name of that rank. Commas and semicolons are not allowed in the name of the rank. Example: ">X80725_S000004313;tax=d:Bacteria,p:Proteobacteria,c:Gammaproteobacteria, o:Enterobacteriales,f:Enterobacteriaceae,g:Escherichia/Shigella,s:Escherichia_coli".
The text was updated successfully, but these errors were encountered: