remove view

Zachary Foster · Zachary Foster · commit 452ee2edf4e0 · 2025-03-18T10:01:22.000-07:00
diff --git a/.gitignore b/.gitignore
@@ -20,4 +20,5 @@ docs/lab_meetings
 path_surveil_data
 .RData
 deleteme/
+tests/output/
 
diff --git a/subworkflows/local/prepare_input/main.nf b/subworkflows/local/prepare_input/main.nf
@@ -106,11 +106,11 @@ workflow PREPARE_INPUT {
 
     // Add estimated depth and kingdom to sample metadata
     sendsketch_depth = BBMAP_SENDSKETCH.out.hits
-        .splitText(limit: 2, by: 2).view()
+        .splitText(limit: 2, by: 2)
         .map { sample_meta, header ->
             def match = header =~ /Depth: ([0-9.]+)/
             [sample_meta, match[0][1]]
-        }.view()
+        }
     sample_data = sample_data
         .map{ sample_meta, ref_metas ->
             [[id: sample_meta.sample_id], sample_meta, ref_metas]
