diff --git a/modules/local/starfusion/download/main.nf b/modules/local/starfusion/download/main.nf index 9c9b1482..ce55d3f6 100644 --- a/modules/local/starfusion/download/main.nf +++ b/modules/local/starfusion/download/main.nf @@ -4,9 +4,12 @@ process STARFUSION_DOWNLOAD { conda "bioconda::dfam=3.3 bioconda::hmmer=3.3.2 bioconda::star-fusion=1.12.0 bioconda::trinity=2.13.2 bioconda::samtools=1.9 bioconda::star=2.7.8a" container 'docker.io/trinityctat/starfusion:1.12.0' + input: + val meta + output: - path "ctat_genome_lib_build_dir/*" , emit: reference - path "ctat_genome_lib_build_dir/ref_annot.gtf", emit: chrgtf + path "ctat_genome_lib_build_dir/*" , emit: reference + tuple val(meta), path("ctat_genome_lib_build_dir/ref_annot.gtf"), emit: chrgtf script: diff --git a/workflows/build_references.nf b/workflows/build_references.nf index 0ebf3c08..f2625d33 100644 --- a/workflows/build_references.nf +++ b/workflows/build_references.nf @@ -64,7 +64,7 @@ workflow BUILD_REFERENCES { if (params.starfusion_build){ STARFUSION_BUILD( ENSEMBL_DOWNLOAD.out.fasta, ENSEMBL_DOWNLOAD.out.chrgtf ) } else { - STARFUSION_DOWNLOAD() + STARFUSION_DOWNLOAD( fake_meta ) } }