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handle BOM files, update test to include BOM #511

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handle BOM files, update test to include BOM #511

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2 changes: 1 addition & 1 deletion assets/cellranger_barcodes_samplesheet.csv
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
sample,multiplexed_sample_id,probe_barcode_ids,cmo_ids,description
sample,multiplexed_sample_id,probe_barcode_ids,cmo_ids,description
PBMC_10K_CMO,PBMC_10K_CMO_PBMCs_human_1,,CMO301,PBMCs_human_1
PBMC_10K_CMO,PBMC_10K_CMO_PBMCs_human_2,,CMO302,PBMCs_human_2
4PLEX_HUMAN,Liver_BC1,BC001,,Healthy liver dissociated using the Miltenyi FFPE Tissue Dissociation Kit
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2 changes: 1 addition & 1 deletion bin/check_cellrangermulti.py
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Expand Up @@ -17,7 +17,7 @@ def parse_samplesheet(samplesheet_path):
os.makedirs(ocm_output_dir, exist_ok=True)
os.makedirs(frna_output_dir, exist_ok=True)

with open(samplesheet_path) as csvfile:
with open(samplesheet_path, encoding="utf-8-sig") as csvfile:
reader = csv.DictReader(csvfile)
headers = reader.fieldnames

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