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It would be nice to have the option of using BBTools Clumpify for deduplication as it has the option of performing optical deduplication, instead of PCR deduplication.
Clumpify dedup also has recommended parameters for different sequencing platforms, so it would be good to be able to specify these parameters. And/or perhaps allow providing the sequencing platform for each sample/run and have the pipeline automatically set those parameters.
The text was updated successfully, but these errors were encountered:
Description of feature
Hello,
It would be nice to have the option of using BBTools Clumpify for deduplication as it has the option of performing optical deduplication, instead of PCR deduplication.
Clumpify dedup also has recommended parameters for different sequencing platforms, so it would be good to be able to specify these parameters. And/or perhaps allow providing the sequencing platform for each sample/run and have the pipeline automatically set those parameters.
The text was updated successfully, but these errors were encountered: