The format is based on Keep a Changelog and this project adheres to Semantic Versioning.
- Updated input validation of the pipeline to be more strict
Initial release of nf-core/variantbenchmarking, created with the nf-core template.
- CNV benchmarking subworkflow: Truvari (without sequence resolution pctseq = 0) is added as an option.
- --method intersect is implemented enabling intersection two regions (BED) files given. This is especially useful for CNV comparisons where user might only need the segmental matches. The input regions file does not need to be BED file, can also be tool spesfic outputs. According to the tool, formatting will be converted to BED files to be used with bedtools intersect.
- zenodoid added.
- rtgtools vcfeval added for small somatic variant benchmarking with --squash-ploidy parameter.
- truth.md links are removed
Initial release of full functioning nf-core/variantbenchmarking
Initial release of nf-core/variantbenchmarking, created with the nf-core template.