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Package: GENESPACE
Type: Package
Title: Synteny- and orthology-constrained comparative genomics
Version: 1.3.1
Author: John T. Lovell
Maintainer: John T. Lovell <jlovell@hudsonalpha.org>
Description: Construct pan-gene sets and other comparative genomics
analyses from synteny- and orthogroup-constrained blast hits.
Imports: data.table,
dbscan,
Biostrings,
igraph,
parallel,
stats,
grDevices,
R.utils,
ggplot2
Suggests: knitr,
rmarkdown,
rtracklayer,
ape,
IRanges,
GenomicRanges,
BiocGenerics,
GenomeInfoDb,
gridExtra
SystemRequirements: MCScanX,
orthofinder,
diamond
License: file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
VignetteBuilder: knitr