Repositories list

• status.bioconductor.org

  Public
  Status page for Bioconductor based on cstate hugo site

  0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

• gha-build-rstudio-release-amd64

  Public
  R

  •0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

• bioconductor_salt

  Public
  Salt to configure Linux and Mac (x86_64, arm64) for the BBS

  vagrantsaltstackbioconductor

  SaltStack

  •3•1•27•3•Updated Feb 14, 2025Feb 14, 2025

• bioconductor_docker

  Public
  Docker Containers for Bioconductor

  docker-imagebioconductorbioconductor-containers

  Shell

  •

  Artistic License 2.0

  •31•77•16•3•Updated Feb 14, 2025Feb 14, 2025

• EuroBioC2025

  Public
  Website of the European Bioconductor Conference 2025

  conferencebioconductoreuropean

  CSS

  •4•2•0•0•Updated Feb 14, 2025Feb 14, 2025

• gbcc2025

  Public
  CSS

  •

  MIT License

  •3•0•0•1•Updated Feb 14, 2025Feb 14, 2025

• BiocSlack

  Public
  CSS

  •

  MIT License

  •0•1•0•0•Updated Feb 14, 2025Feb 14, 2025

• BiocManager

  Public
  CRAN Package For Managing Bioconductor Packages

  core-servicescranr-package

  R

  •25•74•20•3•Updated Feb 13, 2025Feb 13, 2025

• BiocReporting

  Public
  Public repo for Bioconductor project reporting 2022

  TeX

  •6•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• DelayedArray

  Public
  A unified framework for working transparently with on-disk and in-memory array-like datasets

  bioconductor-packagecore-packageu24ca289073

  R

  •9•26•18•0•Updated Feb 13, 2025Feb 13, 2025

• HDF5Array

  Public
  HDF5 datasets as array-like objects in R

  bioconductor-packagecore-packageu24ca289073

  R

  •14•12•4•1•Updated Feb 13, 2025Feb 13, 2025

• pkgrevdocs

  Public
  Training Material for Community Reviewers

  TeX

  •

  Other

  •19•8•9•3•Updated Feb 13, 2025Feb 13, 2025

• BiocWorkingGroups

  Public
  Bioconductor working group guidelines. Also, a list of active, suggested, and inactive working groups for bioconductor for the community to volunteer to be apart of. The community is also welcome to suggest new working groups.

  communitybookworking-group+ 2bioconductorguidelines

  TeX

  •12•8•0•0•Updated Feb 13, 2025Feb 13, 2025

• BiocHowTo

  Public
  Other

  •3•3•0•1•Updated Feb 12, 2025Feb 12, 2025

• IRanges

  Public
  Foundation of integer range manipulation in Bioconductor

  bioconductor-packagecore-package

  R

  •10•22•9•3•Updated Feb 11, 2025Feb 11, 2025

• BBS

  Public
  The Bioconductor Build System

  Shell

  •11•9•49•3•Updated Feb 11, 2025Feb 11, 2025

• basilisk.utils

  Public
  Clone of the Bioconductor repository for the basilisk.utils package.

  bioconductor-package

  R

  •

  GNU General Public License v3.0

  •5•1•1•1•Updated Feb 11, 2025Feb 11, 2025

• basilisk

  Public
  Clone of the Bioconductor repository for the basilisk package.

  bioconductor-package

  R

  •

  GNU General Public License v3.0

  •15•27•11•0•Updated Feb 11, 2025Feb 11, 2025

• bioconductor-training

  Public
  Bioconductor teaching and education committee

  trainingeducationteaching+ 2bioconductorcommittee

  HTML

  •26•46•7•0•Updated Feb 11, 2025Feb 11, 2025

• S4Vectors

  Public
  Foundation of vector-like and list-like containers in Bioconductor

  bioconductor-packagecore-package

  R

  •21•18•24•2•Updated Feb 10, 2025Feb 10, 2025

• GSEABase

  Public
  Gene set enrichment data structures and methods

  bioconductor-packagecore-package

  R

  •12•5•2•0•Updated Feb 10, 2025Feb 10, 2025

• bioconductor.org

  Public
  Source code for the Bioconductor website

  websitebioconductor

  HTML

  •41•25•14•12•Updated Feb 10, 2025Feb 10, 2025

• BiocStickers

  Public
  Stickers for some Bioconductor packages - feel free to contribute and/or modify.

  bioconductorstickers

  R

  •

  Other

  •88•125•7•0•Updated Feb 10, 2025Feb 10, 2025

• biocblog

  Public
  A Quarto blog for Bioconductor community

  blogcommunityr+ 4bioconductorhacktoberfestquartohacktoberfest2022

  HTML

  •28•10•6•0•Updated Feb 8, 2025Feb 8, 2025

• S4Arrays

  Public
  Foundation of array-like containers in Bioconductor

  bioconductor-packagecore-package

  R

  •1•5•0•0•Updated Feb 8, 2025Feb 8, 2025

• GenomicDataCommons

  Public
  Provide R access to the NCI Genomic Data Commons portal.

  data-sciencebioinformaticsr+ 8genomicscancerapi-clientcore-servicestcgabioconductorvignette+ 1

  R

  •23•86•20•0•Updated Feb 7, 2025Feb 7, 2025

• BiocGenerics

  Public
  Defines many S4 generic functions used in Bioconductor

  bioconductor-packagecore-package

  R

  •8•12•0•0•Updated Feb 7, 2025Feb 7, 2025

• biocViews

  Public
  Categorized views of R package repositories

  bioconductor-packagecore-package

  R

  •4•4•3•4•Updated Feb 6, 2025Feb 6, 2025

• BiocCheck

  Public
  core-servicesbioconductor-package

  R

  •27•8•23•0•Updated Feb 3, 2025Feb 3, 2025

• SparseArray

  Public
  High-performance sparse data representation and manipulation in R

  bioconductor-packagecore-package

  C

  •2•8•3•0•Updated Feb 3, 2025Feb 3, 2025