Repositories list

• masif-neosurf

  Public
  MaSIF-neosurf: surface-based protein design for ternary complexes.

  drug-designprotein-designmolecular-surface+ 1geometric-deep-learning

  Python

  •

  Apache License 2.0

  •15•98•6•0•Updated Mar 7, 2025Mar 7, 2025

• DrugFlow

  Public
  Multi-domain Distribution Learning for De Novo Drug Design

  generative-modeldrug-designequivariance+ 1protein-flexibility

  Python

  •

  MIT License

  •7•32•1•0•Updated Mar 6, 2025Mar 6, 2025

• caffeine-multi-state-design

  Public
  Python

  •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

• masif

  Public
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

  protein-surfacemolecular-surfacegeometric-deep-learning

  Python

  •

  Apache License 2.0

  •158•631•51•2•Updated Jun 19, 2024Jun 19, 2024

• masif_seed

  Public
  Masif seed paper repository

  Jupyter Notebook

  •

  Apache License 2.0

  •35•145•14•0•Updated Jun 15, 2023Jun 15, 2023

• lpdi-epfl.github.io

  Public
  A new website for the lab

  HTML

  •0•0•0•3•Updated Apr 11, 2023Apr 11, 2023

• masif-dockerfile

  Public
  Dockerfile

  •

  Apache License 2.0

  •2•1•1•0•Updated Jan 23, 2023Jan 23, 2023

• tbpipeline

  Public
  topobuilder pipeline

  Roff

  •2•3•0•0•Updated Apr 22, 2022Apr 22, 2022

• topobuilder

  Public
  Parametric Building of de novo Functional Topologies

  Python

  •16•44•0•0•Updated Mar 11, 2022Mar 11, 2022

• CDH_AIR

  Public
  Repository for Shui et al. 2021

  Scala

  •0•1•0•0•Updated Aug 3, 2021Aug 3, 2021

• RosettaSurf

  Public
  Jupyter Notebook

  •4•13•0•0•Updated Jun 11, 2021Jun 11, 2021

• Bottom-up-de-novo-design

  Public
  Roff

  •4•14•0•0•Updated Jun 22, 2020Jun 22, 2020

• trivalent_cocktail

  Public
  Roff

  •4•11•1•0•Updated May 16, 2020May 16, 2020

• AcrIIC1X

  Public
  Computational design of anti-CRISPR proteins with improved inhibition potency and expanded specificity.

  Jupyter Notebook

  •

  MIT License

  •2•1•0•0•Updated Feb 10, 2020Feb 10, 2020

• rstoolbox

  Public
  Python Toolbox For Rosetta Silent Files Processing

  sciencedata-visualizationdata-analysis+ 2protein-designprotein-sequence

  Python

  •

  MIT License

  •9•15•0•0•Updated May 23, 2019May 23, 2019

• FunFolDesData

  Public
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.

  structural-biologyprotein-structurepublication-data+ 4rosettaprotein-designprotein-protein-interactionfunctional-protein-design

  Scala

  •10•19•0•0•Updated Apr 12, 2019Apr 12, 2019

• STOP-CAR

  Public
  STOP-CAR repository

  0•2•1•0•Updated Dec 1, 2018Dec 1, 2018

• anti-CRISPR-designs

  Public
  Engineered anti-CRISPR proteins for optogenetic control of CRISPR/Cas9.

  Scala

  •0•0•0•0•Updated Aug 10, 2018Aug 10, 2018