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    138 repositories

    • iDAS

      Public
      Interpretable Differential Abundance signature
      differential-expressionsinglecellidas
      differential-expressionsinglecellidasdifferential-abundance
      R
      •0•1•0•0•Updated Jul 17, 2026Jul 17, 2026

    • wSIR_2024

      Public
      Analysis scripts for Max's wSIR project
      R
      •0•0•0•0•Updated Jul 14, 2026Jul 14, 2026

    • wSIR

      Public
      Weighted Sliced Inverse Regression for spatial omics data analysis
      R
      •
      Other
      •1•1•0•0•Updated Jul 14, 2026Jul 14, 2026

    • Hydra

      Public
      Python
      •
      MIT License
      •0•6•0•0•Updated Jul 11, 2026Jul 11, 2026

    • GHIST_plus

      Public
      Python
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Jul 11, 2026Jul 11, 2026

    • ClustSIGNAL_analysis2025

      Public
      ClustSIGNAL simulation, benchmarking, and real-world data analysis.
      R
      •0•0•0•0•Updated Jul 10, 2026Jul 10, 2026

    • biomarkerPanels

      Public
      Multi-Objective Optimization
      R
      •0•0•0•0•Updated Jul 8, 2026Jul 8, 2026

    • spicyR

      Public
      R
      •5•12•14•0•Updated Jul 7, 2026Jul 7, 2026

    • vreason-analysis

      Public
      R
      •0•0•0•0•Updated Jul 2, 2026Jul 2, 2026

    • CCIDeconv

      Public
      Subcellular CCI Deconvolution
      Jupyter Notebook
      •0•1•0•0•Updated Jul 1, 2026Jul 1, 2026

    • BenchHub-analysis

      Public
      BenchHub analysis
      R
      •0•0•0•0•Updated Jun 24, 2026Jun 24, 2026

    • .github

      Public
      0•0•0•0•Updated Jun 6, 2026Jun 6, 2026

    • clustSIGNAL

      Public
      clustering of Spatially Informed Gene expression with Neighbourhood Adapted Learning
      R
      •0•6•0•0•Updated Jun 2, 2026Jun 2, 2026

    • BenchHub

      Public
      R
      •
      Other
      •0•0•4•0•Updated Apr 29, 2026Apr 29, 2026

    • lisaClust

      Public
      R
      •1•4•9•0•Updated Apr 15, 2026Apr 15, 2026

    • iri-drug-repurposing

      Public
      0•0•0•0•Updated Mar 28, 2026Mar 28, 2026

    • soft-tissue-sarcoma-project-pbmc-scRNAseq

      Public
      R code for the analysis in soft tissue sarcoma pbmc scRNAseq project
      0•0•0•0•Updated Feb 9, 2026Feb 9, 2026

    • scFeatures

      Public
      R
      •1•15•11•0•Updated Jan 23, 2026Jan 23, 2026

    • simKAP

      Public
      HTML
      •0•1•0•0•Updated Jan 19, 2026Jan 19, 2026

    • scHOTTER

      Public
      scHOTTER package
      R
      •
      Other
      •0•1•0•0•Updated Jan 8, 2026Jan 8, 2026

    • Statial

      Public
      rsingle-cell
      rsingle-cell
      R
      •1•6•7•1•Updated Dec 15, 2025Dec 15, 2025

    • ClassifyR

      Public
      A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing
      R
      •3•6•3•0•Updated Dec 2, 2025Dec 2, 2025

    • scdneySpatial_ABACBS2025

      Public
      scdney spatial workshop for ABACBS 2025
      HTML
      •
      Other
      •0•1•0•0•Updated Nov 25, 2025Nov 25, 2025

    • benchmarkinsights_ABACBS2025

      Public
      HTML
      •0•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • StabMap2

      Public
      StabMap2 Package
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 6, 2025Nov 6, 2025

    • 2025_NUS_Workshop

      Public
      HTML
      •
      MIT License
      •0•1•0•0•Updated Oct 30, 2025Oct 30, 2025

    • llm-bio-reports

      Public
      LLM-Bio-Reports
      HTML
      •0•0•0•0•Updated Oct 18, 2025Oct 18, 2025

    • scdney

      Public
      TeX
      •
      MIT License
      •0•11•2•0•Updated Oct 14, 2025Oct 14, 2025

    • Melanoma_neoadjuvant_Olink

      Public
      R code for the analysis of serum proteomics data (Olink) from stage III melanoma patients treated with neoadjuvant immunotherapy
      0•0•0•0•Updated Oct 10, 2025Oct 10, 2025

    • GBCC2025_spatial_workshop

      Public
      Dockerfile
      •
      Other
      •0•1•0•0•Updated Oct 7, 2025Oct 7, 2025
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