KEPACO

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35 repositories

survivalfm
Public
Efficient modelling of linear and pairwise interaction terms in proportional hazards survival models using factorized parametrization.
R
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MIT License
•0•0•0•0•Updated Jul 28, 2025Jul 28, 2025
ProjSe
Public
Supervised variables selection by projection operators in kernel space
Python
•
MIT License
•0•0•0•0•Updated Jun 17, 2025Jun 17, 2025
survivalfm-analysis
Public
R
•0•0•0•0•Updated May 7, 2025May 7, 2025
comboKR2.0
Public
Python
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MIT License
•0•0•0•0•Updated Dec 19, 2024Dec 19, 2024
GO-LTR-prediction
Public
Protein function prediction through latent tensor reconstruction
gene-ontology protein-function-prediction multi-view-learning
gene-ontology protein-function-prediction multi-view-learning latent-tensor-reconstruction
Python
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MIT License
•1•4•0•0•Updated May 19, 2024May 19, 2024
gradKCCA
Public
Implementations of gradKCCA
kernel-methods projected-gradients canonical-correlation-analysis
kernel-methods projected-gradients canonical-correlation-analysis alternating-optimization
MATLAB
•13•16•0•0•Updated Feb 16, 2024Feb 16, 2024
GO_LTR
Public
LTR Multiview for Gene Ontology prediction
Python
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MIT License
•0•0•0•0•Updated Feb 5, 2024Feb 5, 2024
comboKR
Public
comboKR for predicting drug combination response surfaces
Python
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MIT License
•0•1•0•0•Updated Dec 20, 2023Dec 20, 2023
LTR_Multiview
Public
Polynomial Regression via Latent Tensor Reconstruction - Multiview version
Python
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MIT License
•0•1•0•0•Updated Jan 9, 2023Jan 9, 2023
iokr_for_metabolite_identification
Public
Repository for the IOKR and MP-IOKR adapted to the metabolite identification problem.
MATLAB
•0•0•0•0•Updated Oct 12, 2022Oct 12, 2022
lcms2struct_exp
Public
Scripts to run the experiments and analysis for the publication "Joint structural annotation of small molecules using liquid chromatography retention order and …
Jupyter Notebook
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MIT License
•2•3•1•0•Updated Sep 7, 2022Sep 7, 2022
msms_rt_ssvm
Public
Implementation of the LC-MS²Struct model published in the manuscript "Joint structural annotation of small molecules using liquid chromatography retention order…
Python
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MIT License
•5•7•12•0•Updated Aug 28, 2022Aug 28, 2022
msms_rt_score_integration
Public
Code, Data and Results of the publication: "Probabilistic Framework for Integration of Tandem-Mass Spectrum and Retention Time Information in Small Molecule Ide…
mass-spectrum lc-msms metabolite-identification
mass-spectrum lc-msms metabolite-identification retention-order-prediction
MAXScript
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Other
•2•7•2•0•Updated Dec 6, 2021Dec 6, 2021
ComboLTR
Public
Python
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MIT License
•0•1•0•0•Updated Aug 2, 2021Aug 2, 2021
comboFM
Public
Machine learning framework for predicting the responses of drug combinations in pre-clinical studies, such as those based on cell lines or patient-derived cells…
Python
•14•26•2•0•Updated Oct 25, 2020Oct 25, 2020
retention_order_prediction
Public
Code, Data and Results of the publication: "Liquid-Chromatography Retention Order Prediction for Metabolite Identification" by Bach et al. 2018
HTML
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Other
•1•3•1•0•Updated Apr 22, 2020Apr 22, 2020
pairwiseMKL
Public
pairwiseMKL package
Python
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Other
•5•8•0•0•Updated Mar 7, 2020Mar 7, 2020
PMFA
Public
Principal Metabolic Flux Mode Analysis
MATLAB
•2•2•0•1•Updated Jul 18, 2019Jul 18, 2019
MKC_software
Public
MATLAB
•1•0•0•0•Updated Jun 11, 2019Jun 11, 2019
scca-hsic
Public
MATLAB implementation of SCCA-HSIC
sparsity dimensionality-reduction kernel-methods
sparsity dimensionality-reduction kernel-methods
MATLAB
•2•4•0•0•Updated Nov 8, 2018Nov 8, 2018
cca-tutorial
Public
Worked examples
MATLAB
•5•15•0•0•Updated Sep 4, 2018Sep 4, 2018
Efficient-Discovery-of-Genome-scale-Metabolic-Pathways-for-Synthetic-Biology
Public
MATLAB
•0•0•0•0•Updated Jun 1, 2017Jun 1, 2017
softALIGNF
Public
ALIGNF+ (soft ALIGNF) python implementation.
Python
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Apache License 2.0
•0•1•0•0•Updated Jul 3, 2016Jul 3, 2016
MKC
Public
Multi-view Kernel Completion
MATLAB
•1•1•0•0•Updated Jun 1, 2016Jun 1, 2016
fingerid
Public
Molecular fingerprint prediction from MS/MS
MAXScript
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Apache License 2.0
•0•2•1•0•Updated May 26, 2016May 26, 2016
fswatch-rsync
Public
Watches and synchronizes a local folder with a remote folder via another server over ssh
Shell
•22•57•3•0•Updated Apr 15, 2016Apr 15, 2016
metaCCA-matlab
Public
MATLAB
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Other
•2•8•0•0•Updated Feb 20, 2016Feb 20, 2016
ProteinFunctionPrediction
Public
Groff
•0•0•0•0•Updated Jan 27, 2016Jan 27, 2016
primal_dual_scca
Public
Implementation of the Primal-Dual Sparse Canonical Correlation Analysis
MATLAB
•1•3•0•0•Updated Sep 28, 2015Sep 28, 2015
DeepBiosphere
Public
MATLAB
•0•0•0•0•Updated Jul 10, 2015Jul 10, 2015