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    41 repositories

    • diff-fuse

      Public
      Tool for comparing multiple JSON documents side by side and producing a merged result interactively
      Python
      •
      Apache License 2.0
      •1•1•0•0•Updated Aug 18, 2026Aug 18, 2026

    • biohackathon2025

      Public
      Bidirectional bridge: GitHub ⇄ Bio.tools
      Python
      •
      Apache License 2.0
      •1•3•11•0•Updated Aug 18, 2026Aug 18, 2026

    • bio.tools-annotation-quality-evaluation

      Public
      Systematic Evaluation and Enhancement of bio.tools Annotation Quality
      Python
      •
      MIT License
      •2•0•0•0•Updated Aug 14, 2026Aug 14, 2026

    • biotoolsRegistry

      Public
      biotoolsregistry: discovery portal for bioinformatics software and databases
      registrybioinformaticsdatabase
      registrybioinformaticsdatabase
      HTML
      •
      GNU General Public License v3.0
      •25•89•117•5•Updated Aug 9, 2026Aug 9, 2026

    • biohackathon2024

      Public
      ELIXIR Biohackathon 2024 project nr. 16
      biohackeu24
      biohackeu24
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•0•0•Updated Jul 20, 2026Jul 20, 2026

    • pub2tools

      Public
      A utility constructing bio.tools entries from publications
      Java
      •
      GNU General Public License v3.0
      •5•5•0•1•Updated Apr 10, 2026Apr 10, 2026

    • biotoolsDocs

      Public
      Documentation for bio.tools and related community projects
      GNU General Public License v3.0
      •13•5•9•0•Updated Feb 26, 2026Feb 26, 2026

    • biohackathon2025-paper

      Public
      BioHackrXiv paper from BioHackathon Europe 2025 Project #5
      TeX
      •3•0•1•0•Updated Feb 24, 2026Feb 24, 2026

    • biotoolsLLMAnnotate

      Public
      Python
      •0•0•0•0•Updated Jan 15, 2026Jan 15, 2026

    • biotoolsSchema

      Public
      biotoolsSchema : Tool description data model for computational tools in life sciences
      HTML
      •
      Creative Commons Attribution Share Alike 4.0 International
      •13•41•37•1•Updated Dec 13, 2025Dec 13, 2025

    • bt-new-angular

      Public
      bio.tools Angular 2+ frontend draft work
      TypeScript
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated May 11, 2025May 11, 2025

    • biohackathon2024-paper

      Public
      BioHackrXiv paper from BioHackathon Europe 2024 Project #16
      TeX
      •1•0•1•0•Updated Apr 11, 2025Apr 11, 2025

    • biohackathon2021

      Public
      biohackeu21
      biohackeu21
      Python
      •1•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • bio-tools-curation-tooling

      Public
      Python
      •0•0•0•0•Updated Sep 9, 2024Sep 9, 2024

    • galaxy

      Public
      Data intensive science for everyone.
      Python
      •
      Other
      •1.2k•1•0•0•Updated Aug 15, 2024Aug 15, 2024

    • content-sandbox

      Public
      Experimental repo of bio.tools content for augmentation with other sources of tool information
      34•0•0•27•Updated Oct 22, 2023Oct 22, 2023

    • biotoolsConnect

      Public
      Adaptors for content exchange between bio.tools and community projects.
      biohackeu20
      biohackeu20
      Python
      •9•4•3•7•Updated Feb 20, 2023Feb 20, 2023

    • biohackathon2022

      Public
      ELIXIR Biohackathon 2022 project nr. 25
      biohackeu22
      biohackeu22
      Jupyter Notebook
      •
      MIT License
      •4•0•0•0•Updated Feb 15, 2023Feb 15, 2023

    • biotoolsSum

      Public
      bio.tools interface with report generation features
      JavaScript
      •
      MIT License
      •5•5•4•24•Updated Jan 12, 2023Jan 12, 2023

    • debian-med-links-analysis

      Public
      A python notebook to keep track of the cross-linking between bio.tools and EDAM
      Jupyter Notebook
      •
      MIT License
      •5•1•0•10•Updated Dec 8, 2022Dec 8, 2022

    • Tool-Information-Standards

      Public
      GitHub pages website summarising information standards for the description of bioinformatics software tools.
      7•2•3•2•Updated Nov 29, 2022Nov 29, 2022

    • bioinformatics-software-metadata-enhancement

      Public archive
      TeX
      •
      Creative Commons Zero v1.0 Universal
      •6•1•0•0•Updated Nov 14, 2022Nov 14, 2022

    • ebi2biotools

      Public
      Script to enable updating EBI services in bio.tools
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 17, 2022Jul 17, 2022

    • biotoolsSchemaDocs

      Public
      Documentation for biotoolsSchema
      Makefile
      •
      Other
      •5•2•4•0•Updated Apr 15, 2021Apr 15, 2021

    • biotoolsSchemaJ

      Public
      biotoolsSchemaJ: documentation for JSON schema version of biotoolsSchema (tool description data model for computational tools in life sciences)
      0•0•0•0•Updated Nov 8, 2020Nov 8, 2020

    • biotools-github-editor

      Public
      bio.tools content editing driven by GitHub API
      HTML
      •
      GNU General Public License v3.0
      •4•3•0•1•Updated Oct 13, 2020Oct 13, 2020

    • Tool-Information-Profiles

      Public
      JSON schema for definition of tool information profiles - a JSON document which specifies which tool attributes should be specified for different types of tools…
      Jupyter Notebook
      •0•1•1•0•Updated Jun 23, 2020Jun 23, 2020

    • biotoolsRdf

      Public
      RDF data and SPARQL queries for producing/consuming Bio.Tools as Linked Data
      4•5•12•0•Updated Jun 4, 2020Jun 4, 2020

    • biotoolsShim

      Public
      Adapters for converting biotoolsSchema-compatible file formats.
      HTML
      •3•2•7•0•Updated May 25, 2020May 25, 2020

    • content.jsonld

      Public
      0•2•0•0•Updated Nov 21, 2019Nov 21, 2019
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