Repositories list

• systemPipeR.github.io

  Public
  systemPipe Workflow Environment

  bioconductorbioconductor-packagesystempiper-workflows+ 2

  bioconductorbioconductor-packagesystempiper-workflowssystempipersystempipeshiny

  HTML

  •

  Apache License 2.0

  •00 forks•44 stars•00 issues•44 pull requests•Updated Jun 13, 2026Jun 13, 2026

• sprwf-varseq

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 21, 2026Feb 21, 2026

• sprwf-scrna

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 21, 2026Feb 21, 2026

• sprwf-rnaseq

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 21, 2026Feb 21, 2026

• sprwf-riboseq

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 21, 2026Feb 21, 2026

• sprwf-chipseq

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 21, 2026Feb 21, 2026

• sprwf-cheminfo

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 21, 2026Feb 21, 2026

• sprwf-blast

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 21, 2026Feb 21, 2026

• sprwfcmp-data

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 21, 2026Feb 21, 2026

• sprwfcmp-param

  Public
  Common Workflow Language

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 21, 2026Feb 21, 2026

• sprwf-new

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 21, 2026Feb 21, 2026

• sprwf-new_bak

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 21, 2026Feb 21, 2026

• .github

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 14, 2026Feb 14, 2026

• systempipe_docker

  Public
  Dockerfile

  •

  Artistic License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 28, 2026Jan 28, 2026

• systemPipeRdata

  Public
  active develop fork of systemPipeRdata, for stable versions use https://github.com/tgirke/systemPipeRdata

  TeX

  •88 forks•00 stars•00 issues•00 pull requests•Updated Jan 9, 2026Jan 9, 2026

• systemPipeShiny

  Public
  A Shiny framework for workflow management and data visualization

  rshinydata-visualization+ 3

  rshinydata-visualizationbioconductorbioconductor-packagesystempiper

  R

  •66 forks•3636 stars•00 issues•00 pull requests•Updated May 20, 2025May 20, 2025

• spsDemo

  Public
  SPS demo source code

  shiny

  shiny

  JavaScript

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 12, 2025Apr 12, 2025

• systemPipeR

  Public
  active develop fork for systemPipeR, for stable versions use https://github.com/tgirke/systemPipeR

  R

  •3939 forks•22 stars•00 issues•00 pull requests•Updated Jul 14, 2023Jul 14, 2023

• systemPipeWorkshop2021

  Public
  workflowbioinformaticsr

  workflowbioinformaticsr

  Common Workflow Language

  •

  MIT License

  •22 forks•22 stars•00 issues•00 pull requests•Updated Nov 4, 2022Nov 4, 2022

• systemPipeTools

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 26, 2022Apr 26, 2022

• cwl_collection

  Public
  CWL CommandLineTool and Workflow descriptions for a variety of applications

  Common Workflow Language

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 26, 2022Apr 26, 2022