Merge pull request #49 from pepkit/dev

Release 0.4.5

Author: khoroshevskyi

docs/changelog.md

@@ -3,6 +3,11 @@
 This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html) and [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) format.
 
 
+## [0.4.5] - 2024-11-21
+### Added
+- Function for unwrapping PEPhub registry path
+- Timeout for requests
+
 ## [0.4.4] - 2024-08-21
 ### Fixed
 - Project annotation model

pephubclient/__init__.py

@@ -4,7 +4,7 @@
 import coloredlogs
 
 __app_name__ = "pephubclient"
-__version__ = "0.4.4"
+__version__ = "0.4.5"
 __author__ = "Oleksandr Khoroshevskyi, Rafal Stepien"
 
 

pephubclient/helpers.py

@@ -45,6 +45,7 @@ def send_request(
             headers=headers,
             params=params,
             json=json,
+            timeout=10,
         )
         if request_return.status_code == 401:
             if (
@@ -160,6 +161,15 @@ def is_registry_path(input_string: str) -> bool:
     return True
 
 
+def unwrap_registry_path(input_string: str) -> RegistryPath:
+    """
+    Unwrap registry path from string
+    :param str input_string: path to the PEP (or registry path)
+    :return RegistryPath: RegistryPath object
+    """
+    return RegistryPath(**parse_registry_path(input_string))
+
+
 def _build_filename(registry_path: RegistryPath) -> str:
     """
     Takes query string and creates output filename to save the project to.

tests/test_manual.py

@@ -4,7 +4,6 @@
 
 @pytest.mark.skip(reason="Manual test")
 class TestViewsManual:
-
     def test_get(self):
         ff = PEPHubClient().view.get(
             "databio",

tests/test_pephubclient.py

@@ -231,7 +231,6 @@ def test_is_registry_path(self, input_str, expected_output):
 
 
 class TestSamples:
-
     def test_get(self, mocker):
         return_value = {
             "genome": "phc_test1",