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evaluation.py
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351 lines (299 loc) · 18.6 KB
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import argparse
# from mesa.batchrunner import BatchRunner, batch_run
# from mesa import batch_run
from agents.model import Model
from agents import misc
from agents.config import model_params_script, eval_params_script, evaluation_params, bool_params, string_params, OUTPUT_DIR, IMG_FORMATS, ENABLE_MULTITHREADING, CLTS_ARCHIVE_PATH, CLTS_ARCHIVE_URL, CLTS_PATH
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import seaborn as sns
import os
from multiprocessing import Pool
# stats_internal = {"prop_internal_prefix_l1": lambda m: m.prop_internal_prefix_l1,
# "prop_internal_suffix_l1": lambda m: m.prop_internal_suffix_l1,
# "prop_internal_prefix_l2": lambda m: m.prop_internal_prefix_l2,
# "prop_internal_suffix_l2": lambda m: m.prop_internal_suffix_l2}
# stats_communicated = {"prop_communicated_prefix_l1": lambda m: m.prop_communicated_prefix_l1,
# "prop_communicated_suffix_l1": lambda m: m.prop_communicated_suffix_l1,
# "prop_communicated_prefix_l2": lambda m: m.prop_communicated_prefix_l2,
# "prop_communicated_suffix_l2": lambda m: m.prop_communicated_suffix_l2}
stats_internal = [ # "prop_internal_prefix_l1", "prop_internal_suffix_l1", "prop_internal_prefix", "prop_internal_suffix",
"prop_internal_prefix_l2", "prop_internal_suffix_l2"]
stats_internal_len = [ # "prop_internal_len_prefix_l1", "prop_internal_len_suffix_l1", "prop_internal_len_prefix", "prop_internal_len_suffix",
"prop_internal_len_prefix_l2", "prop_internal_len_suffix_l2"]
stats_internal_n_affixes = [ # "prop_internal_n_affixes_prefix_l1", "prop_internal_n_affixes_suffix_l1", "prop_internal_n_affixes_prefix", "prop_internal_n_affixes_suffix",
"prop_internal_n_affixes_prefix_l2", "prop_internal_n_affixes_suffix_l2"]
stats_internal_n_unique = [ # "prop_internal_n_unique_prefix_l1", "prop_internal_n_unique_suffix_l1", "prop_internal_n_unique_prefix", "prop_internal_n_unique_suffix",
"prop_internal_n_unique_prefix_l2", "prop_internal_n_unique_suffix_l2"]
stats_prop_correct = ["prop_correct"]
# stats_communicated = ["prop_communicated_prefix_l1", "prop_communicated_suffix_l1",
# "prop_communicated_prefix_l2", "prop_communicated_suffix_l2", "prop_communicated_prefix", "prop_communicated_suffix"]
# stats = {**stats_internal, **stats_communicated}
def str2bool(v):
if isinstance(v, bool):
return v
if v.lower() in ('yes', 'true', 't', 'y', '1'):
return True
elif v.lower() in ('no', 'false', 'f', 'n', '0'):
return False
else:
raise argparse.ArgumentTypeError('Boolean value expected.')
def params_print(params):
return "".join([f"{k}: {v} " for k, v in params.items()])
def model_wrapper(arg):
fixed_params, var_params, output_dir_custom, prop_l2_value, iteration, generations = arg
# Extract variable paramater names, before we add proportion_l2 as another variable parameter
var_params_items = list(var_params.items())
if len(var_params_items) >= 1:
vpn1, vpv1 = var_params_items[0]
else:
vpn1, vpv1 = None, None
if len(var_params_items) == 2:
vpn2, vpv2 = var_params_items[1]
else:
vpn2, vpv2 = None, None
# add proportion l2 as another variable parameter
var_params = var_params | {"proportion_l2": prop_l2_value}
all_params = fixed_params | var_params
m = Model(**all_params, run_id=iteration, generations=generations, var_param1_name=vpn1,
var_param1_value=vpv1, var_param2_name=vpn2, var_param2_value=vpv2, output_dir=output_dir_custom)
stats_df = m.run()
print(f" - {params_print(var_params)}Iteration {iteration}. Generations: {generations}.")
return stats_df
def evaluate_model(cartesian_var_params_runs, iterations):
print(f"Iterations: {iterations}.")
with Pool(processes=None if ENABLE_MULTITHREADING else 1) as pool:
dfs_multi = pool.map(model_wrapper, cartesian_var_params_runs)
return pd.concat(dfs_multi).reset_index(drop=True)
def rolling_avg(df, window, stats):
# run is unique for combination of run + variable_param, so no need to group also on variable param
df_rolling = df.copy(deep=True)
df_rolling[stats] = df.groupby(["run"])[stats].rolling(
window=window, min_periods=1).mean().reset_index(level="run", drop=True)
return df_rolling
def rename_vars_plot(course_df, stats, variable_param):
stat_name_new = "statistic"
course_df = course_df.rename(columns={"stat_name": stat_name_new})
stats_renamed = {stat: stat.replace("prop_internal_", "").replace("_", " ") for stat in stats}
course_df[stat_name_new] = course_df[stat_name_new].replace(stats_renamed)
variable_param_new = variable_param.replace("_", " ")
course_df = course_df.rename(columns={variable_param: variable_param_new})
# If variable_param is proportion_l2, this does again the same as previous lines
prop_l2_new = "proportion l2"
course_df = course_df.rename(columns={"proportion_l2": prop_l2_new})
return course_df, variable_param_new, stat_name_new, prop_l2_new
def create_graph_course(course_df, variable_param, stat, output_dir, runlabel):
# generations = fixed_params["generations"]
y_label = "proportion affixes non-empty"
course_df = course_df.rename(columns={"stat_value": y_label})
course_df_stat = course_df[course_df["stat_name"] == stat]
course_df_stat, variable_param_new, _, _ = rename_vars_plot(course_df_stat, [stat], variable_param)
ax = sns.lineplot(data=course_df_stat, x="generation", y=y_label,
hue=variable_param_new, legend="full", palette="deep")
ax.set_ylim(0, 1)
sns.despine(left=True, bottom=True)
[plt.savefig(os.path.join(
output_dir, f"course{'-'+runlabel if runlabel else ''}.{img_format}"), format=img_format, dpi=300) for img_format in IMG_FORMATS]
plt.clf()
def create_graph_end(course_df, variable_param, stats, output_dir, runlabel, type):
if type == "prop_nonempty":
y_label = "proportion affixes non-empty"
elif type == "len":
y_label = "average affix length"
elif type == "n_affixes":
y_label = "n affixes"
elif type == "n_unique":
y_label = "n unique affixes"
elif type == "prop_correct":
y_label = "proportion correct interactions"
else:
ValueError("Unsupported graph type.")
course_df = course_df.rename(columns={"stat_value": y_label})
df_stats = course_df[course_df["stat_name"].isin(stats)]
df_stats, variable_param_new, stat_name_new, prop_l2_new = rename_vars_plot(
df_stats, stats, variable_param)
# y_label = "proportion utterances non-empty" if mode=="communicated" else "proportion paradigm cells filled"
# df_melted = course_df.melt(id_vars=["generations", variable_param],
# value_vars=stats, value_name=y_label, var_name="statistic")
# Use last 10% of generations as endpoint
generations = max(df_stats["generation"])
df_tail = df_stats[df_stats["generation"] >= generations - (generations/10)]
if variable_param_new == prop_l2_new:
# evaluate_prop_l2 mode
# Use different stats as colours
ax = sns.lineplot(data=df_tail, x=variable_param_new, y=y_label, hue=stat_name_new, legend="full")
else:
# When evaluate_param mode is on, is variable_param as colour
ax = sns.lineplot(data=df_tail, x=prop_l2_new, y=y_label,
hue=variable_param_new, legend="full", palette="viridis_r") # palette="deep"
if type == "prop_nonempty" or type == "prop_correct":
ax.set_ylim(0, 1)
else:
ax.set_ylim(bottom=0)
sns.despine(left=True, bottom=True)
[plt.savefig(os.path.join(
output_dir, f"{variable_param_new}-{type}-end{'-'+runlabel if runlabel else ''}.{img_format}"), format=img_format, dpi=300) for img_format in IMG_FORMATS]
plt.clf()
def create_heatmap(course_df, variable_param1, variable_param2, stats, output_dir, runlabel):
df_stats = course_df[course_df["stat_name"].isin(stats)]
# df_stats = df_stats.rename(columns={"stat_value": y_label})
# df_pivot = df_stats.pivot(index=variable_param1, columns=variable_param2, values=?)
# Use last 10% of generations as endpoint
generations = max(df_stats["generation"])
df_tail = df_stats[df_stats["generation"] >= generations - (generations/10)]
# Slope: Difference in stat value between highest and lowest prop L2,
# Find non-empty entries (sometimes there is no value), group by param combination, find stat value (average over runs) of highest prop L2, subtract stat value (average) of lowest prop L2
df_slope_propl2 = df_tail[df_tail["stat_value"].notna()].groupby([variable_param1, variable_param2])[["proportion_l2", "stat_value"]].apply(
lambda x: x[x["proportion_l2"] == max(x["proportion_l2"])].mean() - x[x["proportion_l2"] == min(x["proportion_l2"])].mean())
df_pivot = df_slope_propl2.reset_index().pivot(index=variable_param1, columns=variable_param2, values="stat_value")
# Correlation calculation, alternative for slope
# df_corr = df_tail.groupby([variable_param1, variable_param2])[["proportion_l2", "stat_value"]].corr().drop(
# columns="stat_value").drop("proportion_l2", level=2).droplevel(2)
# df_pivot = df_corr.unstack()
sns.heatmap(data=df_pivot, vmin=-1.0, vmax=0.0)
# sns.despine(left=True, bottom=True)
plt.xlabel(variable_param1.replace("_", " "))
plt.ylabel(variable_param2.replace("_", " "))
[plt.savefig(os.path.join(
output_dir, f"heatmap-{variable_param1}-{variable_param2}-{'-'+runlabel if runlabel else ''}.{img_format}"), format=img_format, dpi=300) for img_format in IMG_FORMATS]
plt.clf()
df_pivot.to_csv(os.path.join(output_dir, "heatmap.csv"))
def main():
parser = argparse.ArgumentParser(description='Run agent model from terminal.')
model_group = parser.add_argument_group('model', 'Model parameters')
for param in model_params_script:
model_group.add_argument(f"--{param}", nargs="+",
type=str2bool if param in bool_params else float)
evaluation_group = parser.add_argument_group('evaluation', 'Evaluation parameters')
for param in evaluation_params:
if param in bool_params:
evaluation_group.add_argument(f'--{param}', action='store_true')
elif param in string_params:
evaluation_group.add_argument(f'--{param}', type=str, default=eval_params_script[param])
else:
evaluation_group.add_argument(f"--{param}", type=int,
default=eval_params_script[param])
# Parse arguments
args = vars(parser.parse_args())
# Evaluation params
iterations = int(args["iterations"])
generations = int(args["generations"])
runlabel = args["runlabel"]
# Different modes
plot_from_raw = args["plot_from_raw"]
plot_from_raw_on = args["plot_from_raw"] != ""
evaluate_prop_l2 = args["evaluate_prop_l2"]
evaluate_param = args["evaluate_param"]
evaluate_params_heatmap = args["evaluate_params_heatmap"]
output_dir_custom = OUTPUT_DIR
if runlabel != "":
output_dir_custom = f'{OUTPUT_DIR}-{runlabel}'
misc.create_output_dir(output_dir_custom)
# Download CLTS
misc.download_if_needed(CLTS_ARCHIVE_PATH, CLTS_ARCHIVE_URL, CLTS_PATH, "CLTS")
given_model_params = {k: v for k, v in args.items() if k in model_params_script and v is not None}
if plot_from_raw_on:
course_df = pd.read_csv(plot_from_raw, index_col=0)
else:
# If we are running the model, not just plotting from results file
prop_l2_settings = [0.2, 0.4, 0.6, 0.8, 1.0]
if evaluate_prop_l2:
# Check that only one parameter setting is given per parameter
assert all([len(v) == 1 for v in given_model_params.values() if v is not None])
# Use given parameters as fixed parameters, or defaults otherwise. Exclude proportion_l2 to be evaluated.
fixed_params = {k: (v_default if k not in given_model_params else given_model_params[k][0]) for k, v_default in model_params_script.items(
) if k != "proportion_l2"}
elif evaluate_param or evaluate_params_heatmap:
if evaluate_param and len(given_model_params) != 1:
raise ValueError("Exactly 1 model parameter has to be given in evaluate_param mode")
if evaluate_params_heatmap and len(given_model_params) != 2:
raise ValueError(
"Exactly 2 model parameters have to be given in evaluate_params_heatmap mode")
# Use all fixed parameters from defaults. given_model_params are variable params to be evaluated, exlucde those and proportion_l2.
fixed_params = {k: v_default for k, v_default in model_params_script.items(
) if k not in given_model_params and k != "proportion_l2"}
else:
raise ValueError("Choose a mode: evaluate_prop_l2 or evaluate_param or evaluate_params_heatmap.")
fixed_params_print = params_print(fixed_params)
print(f"Fixed model parameters: {fixed_params_print}")
with open(os.path.join(output_dir_custom, "fixedparams.txt"), "w") as param_file:
param_file.write(fixed_params_print)
cartesian_var_params_runs = []
for prop_l2_setting in prop_l2_settings:
for iteration in range(iterations):
if evaluate_prop_l2:
cp = (fixed_params, {}, output_dir_custom, prop_l2_setting, iteration, generations)
cartesian_var_params_runs.append(cp)
elif evaluate_param:
var_param, var_param_values = list(given_model_params.items())[0]
for var_param_value in var_param_values:
cp = (fixed_params, {var_param: var_param_value}, output_dir_custom,
prop_l2_setting, iteration, generations)
cartesian_var_params_runs.append(cp)
elif evaluate_params_heatmap:
var_param1, var_param1_values = list(given_model_params.items())[0]
var_param2, var_param2_values = list(given_model_params.items())[1]
for var_param1_value in var_param1_values:
for var_param2_value in var_param2_values:
cp = (fixed_params, {
var_param1: var_param1_value, var_param2: var_param2_value}, output_dir_custom, prop_l2_setting, iteration, generations)
cartesian_var_params_runs.append(cp)
course_df = evaluate_model(cartesian_var_params_runs, iterations)
if evaluate_prop_l2:
if not plot_from_raw_on:
course_df.to_csv(os.path.join(output_dir_custom, "proportion_l2.csv"))
course_df_long = pd.melt(
course_df, id_vars=["generation", "run_id", "proportion_l2"], var_name="stat_name", value_name="stat_value")
create_graph_end(course_df_long, "proportion_l2", stats_internal,
output_dir_custom, runlabel, type="prop_nonempty")
create_graph_course(course_df_long, "proportion_l2",
"prop_internal_suffix_l2", output_dir_custom, runlabel)
# Create extra diagnostic plots for avg #affixes per speaker
create_graph_end(course_df_long, "proportion_l2", stats_internal_len,
output_dir_custom, runlabel, type="len")
create_graph_end(course_df_long, "proportion_l2", stats_internal_n_affixes,
output_dir_custom, runlabel, type="n_affixes")
# Create extra diagnostic plots for prop correct interactions
create_graph_end(course_df_long, "proportion_l2", stats_prop_correct, output_dir_custom,
runlabel, type="prop_correct")
create_graph_end(course_df_long, "proportion_l2", stats_internal_n_unique, output_dir_custom,
runlabel, type="n_unique")
elif evaluate_param:
var_param = list(given_model_params.keys())[0]
if not plot_from_raw_on:
course_df.to_csv(os.path.join(output_dir_custom, f"{var_param}-evalparam.csv"))
course_df_long = pd.melt(course_df, id_vars=[
"generation", "run_id", "proportion_l2", var_param], var_name="stat_name", value_name="stat_value")
create_graph_course(course_df_long[course_df_long["proportion_l2"] == 1.0], var_param,
"prop_internal_suffix_l2", output_dir_custom, runlabel)
create_graph_end(course_df_long, var_param, ["prop_internal_suffix_l2"],
output_dir_custom, runlabel, type="prop_nonempty")
create_graph_end(course_df_long, var_param, ["prop_internal_len_suffix_l2"],
output_dir_custom, runlabel, type="len")
create_graph_end(course_df_long, var_param, ["prop_internal_n_affixes_suffix_l2"],
output_dir_custom, runlabel, type="n_affixes")
create_graph_end(course_df_long, var_param, stats_prop_correct,
output_dir_custom, runlabel, type="prop_correct")
create_graph_end(course_df_long, var_param, ["prop_internal_n_unique_suffix_l2"],
output_dir_custom, runlabel, type="n_unique")
elif evaluate_params_heatmap:
# evaluate_params_heatmap is legacy mode. Not tested with generating plot from results csv (plot_from_raw)
var_param1 = list(given_model_params.keys())[0]
var_param2 = list(given_model_params.keys())[1]
course_df_long = pd.melt(course_df, id_vars=[
"generation", "run_id", "proportion_l2", var_param1, var_param2], var_name="stat_name", value_name="stat_value")
course_df.to_csv(os.path.join(output_dir_custom, f"{var_param1}-{var_param2}-evalparamsheat.csv"))
create_heatmap(course_df_long, var_param1, var_param2, ["prop_internal_suffix_l2"],
output_dir_custom, f"{runlabel}-prop_nonempty")
create_heatmap(course_df_long, var_param1, var_param2, ["prop_internal_len_suffix_l2"],
output_dir_custom, f"{runlabel}-len")
create_heatmap(course_df_long, var_param1, var_param2, ["prop_internal_n_unique_suffix_l2"],
output_dir_custom, f"{runlabel}-n_unique")
else:
ValueError("Choose a mode: evaluate_prop_l2 or evaluate_param or evaluate_params_heatmap.")
# course_df_rolling = rolling_avg(course_df, ROLLING_AVG_WINDOW, stats_internal)
# create_graph_course(course_df_rolling, var_param, [
# "prop_internal_suffix"], output_dir_custom, "rolling", runlabel)
if __name__ == "__main__":
main()