Skip to content

Is there any way to get total number of reads in the alignment bam file? #228

@yazhinia

Description

@yazhinia

Hello,
I wanted to create a vector of read ids with some statistics on each alignment. For this, I would like to pre-allocate the space for the vector. Is there any way in bamtools to get the number of alignment lines or reads in the bam file.

Thanks very much.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions