Bayesian Workflow with SEMs (#807)

* adding initial notebook

Signed-off-by: Nathaniel <[email protected]>

* running pre-commit

Signed-off-by: Nathaniel <[email protected]>

* update post date

Signed-off-by: Nathaniel <[email protected]>

* update with run

* fix bibtex

* fix bibtex braces

* fix bibtex whitespace

* fix bibtex comma

* fix bibtex space indent

* fadding markdown write up and excalidraw images

Signed-off-by: Nathaniel <[email protected]>

* add note on Bollen

* update with run

Signed-off-by: Nathaniel <[email protected]>

* fix_identification_discrete_choice

* full run

Signed-off-by: Nathaniel <[email protected]>

* add hierarchical diagram

Signed-off-by: Nathaniel <[email protected]>

* tidying extraneous code

Signed-off-by: Nathaniel <[email protected]>

* update with full run

* update sem dc

* add total effects plot

* tidying

* add writing analogy

* adding nicer plot at the end

* add full run and conclusion

Signed-off-by: Nathaniel <[email protected]>

* emphasis in conclusion

Signed-off-by: Nathaniel <[email protected]>

* tighten writing.

Signed-off-by: Nathaniel <[email protected]>

* add justification to conclusion

Signed-off-by: Nathaniel <[email protected]>

* tightening the writing

Signed-off-by: Nathaniel <[email protected]>

* Fix typo

Signed-off-by: Nathaniel <[email protected]>

* further tightening of writing

Signed-off-by: Nathaniel <[email protected]>

* better explanation of residuals plot

Signed-off-by: Nathaniel <[email protected]>

* tidying again

Signed-off-by: Nathaniel <[email protected]>

* emphasise skill acquisition in conclusion

Signed-off-by: Nathaniel <[email protected]>

* further tidying

Signed-off-by: Nathaniel <[email protected]>

* improve last plot with ppc

Signed-off-by: Nathaniel <[email protected]>

* tidying

Signed-off-by: Nathaniel <[email protected]>

* tighter contrast with target based success

Signed-off-by: Nathaniel <[email protected]>

* useful science stinger

Signed-off-by: Nathaniel <[email protected]>

* tighter

Signed-off-by: Nathaniel <[email protected]>

* add structure to the introduction

Signed-off-by: Nathaniel <[email protected]>

* re-label headings

Signed-off-by: Nathaniel <[email protected]>

* update heading size

Signed-off-by: Nathaniel <[email protected]>

* tidying

Signed-off-by: Nathaniel <[email protected]>

* add note about agents

Signed-off-by: Nathaniel <[email protected]>

* tidying

Signed-off-by: Nathaniel <[email protected]>

* furthering tidying

Signed-off-by: Nathaniel <[email protected]>

* acknowledge limits in conclusion

Signed-off-by: Nathaniel <[email protected]>

* tighter

Signed-off-by: Nathaniel <[email protected]>

* add loo section

Signed-off-by: Nathaniel <[email protected]>

* addressing chris' comments

Signed-off-by: Nathaniel <[email protected]>

---------

Signed-off-by: Nathaniel <[email protected]>

Author: NathanielF

examples/case_studies/bayesian_sem_workflow.ipynb

@@ -451,6 +451,14 @@ @misc{kingma2014autoencoding
   archiveprefix = {arXiv},
   primaryclass  = {stat.ML}
 }
+@book{kline2023principles,
+  title         = {Principles and Practice of Structural Equation Modeling},
+  author        = {Kline, R.B.},
+  year          = 2023,
+  publisher     = {Guilford Publications},
+  series        = {Methodology in the Social Sciences Series},
+  url           = {https://books.google.ie/books?id=t2CvEAAAQBAJ}
+}
 @article{koren2009matrixfactorization,
   author        = {Koren, Yehuda and Bell, Robert and Volinsky, Chris},
   journal       = {Computer},
@@ -866,6 +874,14 @@ @inproceedings{vanderplas2012astroML
   doi           = {10.1109/CIDU.2012.6382200},
   year          = {2012}
 }
+@book{vehkalahti2019multivariate,
+  title         = {Multivariate Analysis for the Behavioral Sciences},
+  author        = {Vehkalahti, K. and Everitt, B.S.},
+  year          = {2019},
+  publisher     = {CRC Press, Taylor \& Francis Group},
+  series        = {A Chapman \& Hall book},
+  url           = {https://books.google.ie/books?id=LX97uwEACAAJ}
+}
 @online{vehtari2022Birthdays,
   title         = {Bayesian workflow book - Birthdays},
   author        = {Vehtari, Aki},