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Author: jan-janssen

README.html

@@ -403,25 +403,28 @@ <h3>Simple Example<a class="headerlink" href="#simple-example" title="Link to th
 </pre></div>
 </div>
 <p>These two Python functions are combined in the following example workflow:</p>
-<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">tmp_dict</span> <span class="o">=</span> <span class="n">get_prod_and_div</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">y</span><span class="o">=</span><span class="mi">2</span><span class="p">)</span>
-<span class="n">result</span> <span class="o">=</span> <span class="n">get_sum</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="n">tmp_dict</span><span class="p">[</span><span class="s2">&quot;prod&quot;</span><span class="p">],</span> <span class="n">y</span><span class="o">=</span><span class="n">tmp_dict</span><span class="p">[</span><span class="s2">&quot;div&quot;</span><span class="p">])</span>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="k">def</span><span class="w"> </span><span class="nf">combined_workflow</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">y</span><span class="o">=</span><span class="mi">2</span><span class="p">):</span>
+    <span class="n">tmp_dict</span> <span class="o">=</span> <span class="n">get_prod_and_div</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="o">=</span><span class="n">y</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">get_sum</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="n">tmp_dict</span><span class="p">[</span><span class="s2">&quot;prod&quot;</span><span class="p">],</span> <span class="n">y</span><span class="o">=</span><span class="n">tmp_dict</span><span class="p">[</span><span class="s2">&quot;div&quot;</span><span class="p">])</span>
 </pre></div>
 </div>
 <p>For the workflow representation of these Python functions the Python functions are stored in the <a class="reference download internal" download="" href="_downloads/d4b6ab1210e71ac0cfa700589f3eda0c/workflow.py"><span class="xref download myst">example_workflows/arithmetic/workflow.py</span></a>
 Python module. The connection of the Python functions are stored in the <a class="reference download internal" download="" href="_downloads/b85b54c725e4538522e7eabb629474c5/workflow.json"><span class="xref download myst">example_workflows/arithmetic/workflow.json</span></a>
 JSON file:</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="p">{</span>
   <span class="s2">&quot;nodes&quot;</span><span class="p">:</span> <span class="p">[</span>
-    <span class="p">{</span><span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;function&quot;</span><span class="p">:</span> <span class="s2">&quot;simple_workflow.get_prod_and_div&quot;</span><span class="p">},</span>
-    <span class="p">{</span><span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span> <span class="s2">&quot;function&quot;</span><span class="p">:</span> <span class="s2">&quot;simple_workflow.get_sum&quot;</span><span class="p">},</span>
-    <span class="p">{</span><span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="mi">2</span><span class="p">,</span> <span class="s2">&quot;value&quot;</span><span class="p">:</span> <span class="mi">1</span><span class="p">},</span>
-    <span class="p">{</span><span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="mi">3</span><span class="p">,</span> <span class="s2">&quot;value&quot;</span><span class="p">:</span> <span class="mi">2</span><span class="p">}</span>
+    <span class="p">{</span><span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;function&quot;</span><span class="p">,</span> <span class="s2">&quot;value&quot;</span><span class="p">:</span> <span class="s2">&quot;workflow.get_prod_and_div&quot;</span><span class="p">},</span>
+    <span class="p">{</span><span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span> <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;function&quot;</span><span class="p">,</span> <span class="s2">&quot;value&quot;</span><span class="p">:</span> <span class="s2">&quot;workflow.get_sum&quot;</span><span class="p">},</span>
+    <span class="p">{</span><span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="mi">2</span><span class="p">,</span> <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;input&quot;</span><span class="p">,</span> <span class="s2">&quot;value&quot;</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span> <span class="s2">&quot;name&quot;</span><span class="p">:</span> <span class="s2">&quot;x&quot;</span><span class="p">},</span>
+    <span class="p">{</span><span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="mi">3</span><span class="p">,</span> <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;input&quot;</span><span class="p">,</span> <span class="s2">&quot;value&quot;</span><span class="p">:</span> <span class="mi">2</span><span class="p">,</span> <span class="s2">&quot;name&quot;</span><span class="p">:</span> <span class="s2">&quot;y&quot;</span><span class="p">},</span>
+    <span class="p">{</span><span class="s2">&quot;id&quot;</span><span class="p">:</span> <span class="mi">4</span><span class="p">,</span> <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;output&quot;</span><span class="p">,</span> <span class="s2">&quot;name&quot;</span><span class="p">:</span> <span class="s2">&quot;result&quot;</span><span class="p">}</span>
   <span class="p">],</span>
   <span class="s2">&quot;edges&quot;</span><span class="p">:</span> <span class="p">[</span>
     <span class="p">{</span><span class="s2">&quot;target&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;targetPort&quot;</span><span class="p">:</span> <span class="s2">&quot;x&quot;</span><span class="p">,</span> <span class="s2">&quot;source&quot;</span><span class="p">:</span> <span class="mi">2</span><span class="p">,</span> <span class="s2">&quot;sourcePort&quot;</span><span class="p">:</span> <span class="n">null</span><span class="p">},</span>
     <span class="p">{</span><span class="s2">&quot;target&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;targetPort&quot;</span><span class="p">:</span> <span class="s2">&quot;y&quot;</span><span class="p">,</span> <span class="s2">&quot;source&quot;</span><span class="p">:</span> <span class="mi">3</span><span class="p">,</span> <span class="s2">&quot;sourcePort&quot;</span><span class="p">:</span> <span class="n">null</span><span class="p">},</span>
     <span class="p">{</span><span class="s2">&quot;target&quot;</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span> <span class="s2">&quot;targetPort&quot;</span><span class="p">:</span> <span class="s2">&quot;x&quot;</span><span class="p">,</span> <span class="s2">&quot;source&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;sourcePort&quot;</span><span class="p">:</span> <span class="s2">&quot;prod&quot;</span><span class="p">},</span>
-    <span class="p">{</span><span class="s2">&quot;target&quot;</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span> <span class="s2">&quot;targetPort&quot;</span><span class="p">:</span> <span class="s2">&quot;y&quot;</span><span class="p">,</span> <span class="s2">&quot;source&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;sourcePort&quot;</span><span class="p">:</span> <span class="s2">&quot;div&quot;</span><span class="p">}</span>
+    <span class="p">{</span><span class="s2">&quot;target&quot;</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span> <span class="s2">&quot;targetPort&quot;</span><span class="p">:</span> <span class="s2">&quot;y&quot;</span><span class="p">,</span> <span class="s2">&quot;source&quot;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;sourcePort&quot;</span><span class="p">:</span> <span class="s2">&quot;div&quot;</span><span class="p">},</span>
+    <span class="p">{</span><span class="s2">&quot;target&quot;</span><span class="p">:</span> <span class="mi">4</span><span class="p">,</span> <span class="s2">&quot;targetPort&quot;</span><span class="p">:</span> <span class="n">null</span><span class="p">,</span> <span class="s2">&quot;source&quot;</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span> <span class="s2">&quot;sourcePort&quot;</span><span class="p">:</span> <span class="n">null</span><span class="p">}</span>
   <span class="p">]</span>
 <span class="p">}</span>
 </pre></div>

_downloads/074c18a527b229dcf1aceecb3ceb2862/workflow.json

@@ -31,7 +31,8 @@
     {"id": 28, "type": "input", "value": "strain_4", "name": "working_directory_5"},
     {"id": 29, "type": "function", "value": "python_workflow_definition.shared.get_dict"},
     {"id": 30, "type": "function", "value": "python_workflow_definition.shared.get_list"},
-    {"id": 31, "type": "function", "value": "python_workflow_definition.shared.get_list"}
+    {"id": 31, "type": "function", "value": "python_workflow_definition.shared.get_list"},
+    {"id": 32, "type": "output", "name": "result"}
   ],
   "edges": [
     {"target": 0, "targetPort": "element", "source": 9, "sourcePort": null},
@@ -92,6 +93,7 @@
     {"target": 31, "targetPort": "2", "source": 5, "sourcePort": "energy"},
     {"target": 31, "targetPort": "3", "source": 6, "sourcePort": "energy"},
     {"target": 31, "targetPort": "4", "source": 7, "sourcePort": "energy"},
-    {"target": 8, "targetPort": "energy_lst", "source": 31, "sourcePort": null}
+    {"target": 8, "targetPort": "energy_lst", "source": 31, "sourcePort": null},
+    {"target": 32, "targetPort": null, "source": 8, "sourcePort": null}
   ]
 }

_downloads/4fce43a14fb0221048f87bf1c5f7507a/workflow.json

@@ -6,7 +6,8 @@
     {"id": 3, "type":  "function", "value": "workflow.plot_over_line"},
     {"id": 4, "type": "function", "value": "workflow.substitute_macros"},
     {"id": 5, "type": "function", "value": "workflow.compile_paper"},
-    {"id": 6, "type": "input", "value": 2.0, "name": "domain_size"}
+    {"id": 6, "type": "input", "value": 2.0, "name": "domain_size"},
+    {"id": 7, "type": "output", "name": "result"}
   ],
   "edges": [
     {"target": 0, "targetPort": "domain_size", "source": 6, "sourcePort": null},
@@ -19,6 +20,7 @@
     {"target": 4, "targetPort": "ndofs", "source": 2, "sourcePort": "numdofs"},
     {"target": 4, "targetPort": "domain_size", "source": 6, "sourcePort": null},
     {"target": 5, "targetPort": "macros_tex", "source": 4, "sourcePort": null},
-    {"target": 5, "targetPort": "plot_file", "source": 3, "sourcePort": null}
+    {"target": 5, "targetPort": "plot_file", "source": 3, "sourcePort": null},
+    {"target": 7, "targetPort": null, "source": 5, "sourcePort": null}
   ]
 }

_downloads/b85b54c725e4538522e7eabb629474c5/workflow.json

@@ -3,12 +3,14 @@
     {"id": 0, "type": "function", "value": "workflow.get_prod_and_div"},
     {"id": 1, "type": "function", "value": "workflow.get_sum"},
     {"id": 2, "type": "input", "value": 1, "name": "x"},
-    {"id": 3, "type": "input", "value": 2, "name": "y"}
+    {"id": 3, "type": "input", "value": 2, "name": "y"},
+    {"id": 4, "type": "output", "name": "result"}
   ],
   "edges": [
     {"target": 0, "targetPort": "x", "source": 2, "sourcePort": null},
     {"target": 0, "targetPort": "y", "source": 3, "sourcePort": null},
     {"target": 1, "targetPort": "x", "source": 0, "sourcePort": "prod"},
-    {"target": 1, "targetPort": "y", "source": 0, "sourcePort": "div"}
+    {"target": 1, "targetPort": "y", "source": 0, "sourcePort": "div"},
+    {"target": 4, "targetPort": null, "source": 1, "sourcePort": null}
   ]
 }

_sources/README.md

@@ -34,25 +34,28 @@ def get_prod_and_div(x: float, y: float) -> dict:
 ```
 These two Python functions are combined in the following example workflow:
 ```python
-tmp_dict = get_prod_and_div(x=1, y=2)
-result = get_sum(x=tmp_dict["prod"], y=tmp_dict["div"])
+def combined_workflow(x=1, y=2):
+    tmp_dict = get_prod_and_div(x=x, y=y)
+    return get_sum(x=tmp_dict["prod"], y=tmp_dict["div"])
 ```
 For the workflow representation of these Python functions the Python functions are stored in the [example_workflows/arithmetic/workflow.py](example_workflows/arithmetic/workflow.py)
 Python module. The connection of the Python functions are stored in the [example_workflows/arithmetic/workflow.json](example_workflows/arithmetic/workflow.json) 
 JSON file:
 ```
 {
   "nodes": [
-    {"id": 0, "function": "simple_workflow.get_prod_and_div"},
-    {"id": 1, "function": "simple_workflow.get_sum"},
-    {"id": 2, "value": 1},
-    {"id": 3, "value": 2}
+    {"id": 0, "type": "function", "value": "workflow.get_prod_and_div"},
+    {"id": 1, "type": "function", "value": "workflow.get_sum"},
+    {"id": 2, "type": "input", "value": 1, "name": "x"},
+    {"id": 3, "type": "input", "value": 2, "name": "y"},
+    {"id": 4, "type": "output", "name": "result"}
   ],
   "edges": [
     {"target": 0, "targetPort": "x", "source": 2, "sourcePort": null},
     {"target": 0, "targetPort": "y", "source": 3, "sourcePort": null},
     {"target": 1, "targetPort": "x", "source": 0, "sourcePort": "prod"},
-    {"target": 1, "targetPort": "y", "source": 0, "sourcePort": "div"}
+    {"target": 1, "targetPort": "y", "source": 0, "sourcePort": "div"},
+    {"target": 4, "targetPort": null, "source": 1, "sourcePort": null}
   ]
 }
 ```

_sources/arithmetic.md

@@ -9,25 +9,28 @@ def get_prod_and_div(x: float, y: float) -> dict:
 ```
 These two Python functions are combined in the following example workflow:
 ```python
-tmp_dict = get_prod_and_div(x=1, y=2)
-result = get_sum(x=tmp_dict["prod"], y=tmp_dict["div"])
+def combined_workflow(x=1, y=2):
+    tmp_dict = get_prod_and_div(x=x, y=y)
+    return get_sum(x=tmp_dict["prod"], y=tmp_dict["div"])
 ```
 For the workflow representation of these Python functions the Python functions are stored in the [workflow.py](example_workflows/arithmetic/workflow.py)
 Python module. The connection of the Python functions are stored in the [workflow.json](example_workflows/arithmetic/workflow.json) 
 JSON file:
 ```
 {
   "nodes": [
-    {"id": 0, "function": "workflow.get_prod_and_div"},
-    {"id": 1, "function": "workflow.get_sum"},
-    {"id": 2, "value": 1},
-    {"id": 3, "value": 2}
+    {"id": 0, "type": "function", "value": "workflow.get_prod_and_div"},
+    {"id": 1, "type": "function", "value": "workflow.get_sum"},
+    {"id": 2, "type": "input", "value": 1, "name": "x"},
+    {"id": 3, "type": "input", "value": 2, "name": "y"},
+    {"id": 4, "type": "output", "name": "result"}
   ],
   "edges": [
     {"target": 0, "targetPort": "x", "source": 2, "sourcePort": null},
     {"target": 0, "targetPort": "y", "source": 3, "sourcePort": null},
     {"target": 1, "targetPort": "x", "source": 0, "sourcePort": "prod"},
-    {"target": 1, "targetPort": "y", "source": 0, "sourcePort": "div"}
+    {"target": 1, "targetPort": "y", "source": 0, "sourcePort": "div"},
+    {"target": 4, "targetPort": null, "source": 1, "sourcePort": null}
   ]
 }
 ```

_sources/documentation/arithmetic.md

@@ -9,25 +9,28 @@ def get_prod_and_div(x: float, y: float) -> dict:
 ```
 These two Python functions are combined in the following example workflow:
 ```python
-tmp_dict = get_prod_and_div(x=1, y=2)
-result = get_sum(x=tmp_dict["prod"], y=tmp_dict["div"])
+def combined_workflow(x=1, y=2):
+    tmp_dict = get_prod_and_div(x=x, y=y)
+    return get_sum(x=tmp_dict["prod"], y=tmp_dict["div"])
 ```
 For the workflow representation of these Python functions the Python functions are stored in the [workflow.py](example_workflows/arithmetic/workflow.py)
 Python module. The connection of the Python functions are stored in the [workflow.json](example_workflows/arithmetic/workflow.json) 
 JSON file:
 ```
 {
   "nodes": [
-    {"id": 0, "function": "workflow.get_prod_and_div"},
-    {"id": 1, "function": "workflow.get_sum"},
-    {"id": 2, "value": 1},
-    {"id": 3, "value": 2}
+    {"id": 0, "type": "function", "value": "workflow.get_prod_and_div"},
+    {"id": 1, "type": "function", "value": "workflow.get_sum"},
+    {"id": 2, "type": "input", "value": 1, "name": "x"},
+    {"id": 3, "type": "input", "value": 2, "name": "y"},
+    {"id": 4, "type": "output", "name": "result"}
   ],
   "edges": [
     {"target": 0, "targetPort": "x", "source": 2, "sourcePort": null},
     {"target": 0, "targetPort": "y", "source": 3, "sourcePort": null},
     {"target": 1, "targetPort": "x", "source": 0, "sourcePort": "prod"},
-    {"target": 1, "targetPort": "y", "source": 0, "sourcePort": "div"}
+    {"target": 1, "targetPort": "y", "source": 0, "sourcePort": "div"},
+    {"target": 4, "targetPort": null, "source": 1, "sourcePort": null}
   ]
 }
 ```