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dmkaplan2000dmkaplan2000
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Template for Oxford University Press (#271)
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‎DESCRIPTION‎

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@@ -37,7 +37,8 @@ Authors@R: c(
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person("Zhian N.", "Kamvar", role = c("aut", "cph"), email = "[email protected]", comment = c(ORCID = "0000-0003-1458-7108")),
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person("Noam", "Ross", role = c("aut", "cph"), email = "[email protected]", comment = c(ORCID = "0000-0002-2136-0000")),
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person("Robrecht", "Cannoodt", role = c("aut", "cph"), email = "[email protected]", comment = c(ORCID = "0000-0003-3641-729X", github = "rcannood")),
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person("Duncan", "Luguern", role = c("aut"), email = "[email protected]")
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person("Duncan", "Luguern", role = c("aut"), email = "[email protected]"),
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person("David M.", "Kaplan", role = c("aut", "ctb"), email = "[email protected]", comment = c(ORCID = "0000-0001-6087-359X", github = "dmkaplan2000"))
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)
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Description: A suite of custom R Markdown formats and templates for
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authoring journal articles and conference submissions.

‎NAMESPACE‎

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export(jss_article)
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export(mdpi_article)
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export(mnras_article)
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export(oup_article)
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export(peerj_article)
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export(plos_article)
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export(pnas_article)

‎NEWS.md‎

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- `mnras.cls` was removed from this package because it exists on CTAN.
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- Added Oxford University Press (OUP) template (thanks, @dmkaplan2000, #271).
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rticles 0.13
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---------------------------------------------------------------------
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‎R/article.R‎

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)
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}
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#' @section \code{oup_article}: Format for creating submissions to many Oxford University Press
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#' journals. Adapted from
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#' \url{https://academic.oup.com/journals/pages/authors/preparing_your_manuscript}
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#' and \url{https://academic.oup.com/icesjms/pages/General_Instructions}.
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#' @export
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#' @rdname article
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oup_article <- function(
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..., citation_package = 'natbib', keep_tex = TRUE,
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md_extensions = c("-autolink_bare_uris")
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) {
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pdf_document_format(
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"oup_article", citation_package = citation_package,
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keep_tex = keep_tex, md_extensions = md_extensions, ...
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)
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}
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#' @section \code{peerj_article}: Format for creating submissions to The PeerJ
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#' Journal. This was adapted from the
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#' \href{https://www.overleaf.com/latex/templates/latex-template-for-peerj-journal-and-pre-print-submissions/ptdwfrqxqzbn}{PeerJ

‎README.md‎

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- [NNRAS](https://www.ras.org.uk/news-and-press/2641-new-version-of-the-mnras-latex-package) journal submissions
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- [OUP](https://academic.oup.com/journals/pages/authors/preparing_your_manuscript) articles
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- [PeerJ](https://peerj.com) articles
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- [Royal Society Open Science](http://rsos.royalsocietypublishing.org/) journal submissions

‎inst/rmarkdown/templates/oup_article/resources/template.tex‎

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\documentclass[$if(fontsize)$$fontsize$,$else$12pt,$endif$$if(spacing)$$spacing$,$else$halfline,$endif$$if(papersize)$$papersize$,$else$a4paper,$endif$$for(classoptions)$$classoptions$$sep$,$endfor$]{ouparticle}
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% Packages I think are necessary for basic Rmarkdown functionality
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\usepackage{hyperref}
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\usepackage{graphicx}
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\usepackage{listings}
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\usepackage{color}
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\usepackage{fancyvrb}
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\usepackage{framed}
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%% To allow better options for figure placement
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%\usepackage{float}
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% Packages that are supposedly required by OUP sty file
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\usepackage{amssymb, amsmath, geometry, amsfonts, verbatim, endnotes, setspace}
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% For code highlighting I think
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\DefineVerbatimEnvironment{Highlighting}{Verbatim}{commandchars=\\\{\}}
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\definecolor{shadecolor}{RGB}{248,248,248}
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\newenvironment{Shaded}{\begin{snugshade}}{\end{snugshade}}
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\newcommand{\AlertTok}[1]{\textcolor[rgb]{0.94,0.16,0.16}{#1}}
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\newcommand{\AnnotationTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{#1}}}}
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\newcommand{\AttributeTok}[1]{\textcolor[rgb]{0.77,0.63,0.00}{#1}}
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\newcommand{\BaseNTok}[1]{\textcolor[rgb]{0.00,0.00,0.81}{#1}}
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\newcommand{\BuiltInTok}[1]{#1}
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\newcommand{\CharTok}[1]{\textcolor[rgb]{0.31,0.60,0.02}{#1}}
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\newcommand{\CommentTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textit{#1}}}
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\newcommand{\CommentVarTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{#1}}}}
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\newcommand{\ConstantTok}[1]{\textcolor[rgb]{0.00,0.00,0.00}{#1}}
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\newcommand{\ControlFlowTok}[1]{\textcolor[rgb]{0.13,0.29,0.53}{\textbf{#1}}}
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\newcommand{\DataTypeTok}[1]{\textcolor[rgb]{0.13,0.29,0.53}{#1}}
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\newcommand{\DecValTok}[1]{\textcolor[rgb]{0.00,0.00,0.81}{#1}}
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\newcommand{\DocumentationTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{#1}}}}
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\newcommand{\ErrorTok}[1]{\textcolor[rgb]{0.64,0.00,0.00}{\textbf{#1}}}
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\newcommand{\ExtensionTok}[1]{#1}
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\newcommand{\FloatTok}[1]{\textcolor[rgb]{0.00,0.00,0.81}{#1}}
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\newcommand{\FunctionTok}[1]{\textcolor[rgb]{0.00,0.00,0.00}{#1}}
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\newcommand{\ImportTok}[1]{#1}
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\newcommand{\InformationTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{#1}}}}
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\newcommand{\KeywordTok}[1]{\textcolor[rgb]{0.13,0.29,0.53}{\textbf{#1}}}
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\newcommand{\NormalTok}[1]{#1}
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\newcommand{\OperatorTok}[1]{\textcolor[rgb]{0.81,0.36,0.00}{\textbf{#1}}}
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\newcommand{\OtherTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{#1}}
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\newcommand{\PreprocessorTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textit{#1}}}
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\newcommand{\RegionMarkerTok}[1]{#1}
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\newcommand{\SpecialCharTok}[1]{\textcolor[rgb]{0.00,0.00,0.00}{#1}}
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\newcommand{\SpecialStringTok}[1]{\textcolor[rgb]{0.31,0.60,0.02}{#1}}
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\newcommand{\StringTok}[1]{\textcolor[rgb]{0.31,0.60,0.02}{#1}}
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\newcommand{\VariableTok}[1]{\textcolor[rgb]{0.00,0.00,0.00}{#1}}
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\newcommand{\VerbatimStringTok}[1]{\textcolor[rgb]{0.31,0.60,0.02}{#1}}
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\newcommand{\WarningTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{#1}}}}
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% For making Rmarkdown lists
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\providecommand{\tightlist}{%
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\setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
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% Part for setting citation format package: natbib
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$if(natbib)$
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\usepackage{natbib}
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\bibliographystyle{$if(biblio-style)$$biblio-style$$else$plainnat$endif$}
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$endif$
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% Part for setting citation format package: biblatex
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$if(biblatex)$
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\usepackage[$if(biblio-citestyle)$citestyle=$biblio-citestyle$$else$citestyle=ieee$endif$$if(biblio-style)$,style=$biblio-style$$else$,style=numeric$endif$$if(citation_sorting)$,sorting=$citation_sorting$$endif$]{biblatex}
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$if(bibliography)$
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$for(bibliography)$
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\addbibresource{$bibliography$}
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$endfor$
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$endif$
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$endif$
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% Pandoc header
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$for(header-includes)$
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$header-includes$
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$endfor$
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\begin{document}
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\title{$title$}
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\author{%
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$for(authors)$
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\name{$authors.name$}$if(authors.address)$\address{$authors.address$}$endif$$if(authors.email)$\email{\href{mailto:$authors.email$}{$authors.email$}}$endif$$if(authors.thanks)$\thanks{$authors.thanks$}$else$$if(authors.corresponding_author)$\thanks{Corresponding author; Email: \href{mailto:$authors.email$}{$authors.email$}}$endif$$endif$
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$sep$\and
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$endfor$
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}
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\abstract{$abstract$}
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\date{$if(date)$$date$$else$\today$endif$}
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\keywords{$for(keywords)$$keywords$$sep$; $endfor$}
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\maketitle
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$for(include-before)$
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$include-before$
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$endfor$
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$body$
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$if(notes)$
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\begin{notes}
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$notes$
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\end{notes}
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$endif$
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$if(acknowledgements)$
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\begin{notes}[Acknowledgements]
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$acknowledgements$
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\end{notes}
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$endif$
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$if(natbib)$
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$if(bibliography)$
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$if(biblio-title)$
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$if(book-class)$
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\renewcommand\bibname{$biblio-title$}
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$else$
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\renewcommand\refname{$biblio-title$}
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$endif$
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$endif$
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\bibliography{$for(bibliography)$$bibliography$$sep$,$endfor$}
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$endif$
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$endif$
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$if(biblatex)$
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\printbibliography$if(biblio-title)$[title=$biblio-title$]$endif$
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$endif$
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$for(include-after)$
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$include-after$
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$endfor$
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\end{document}

‎inst/rmarkdown/templates/oup_article/skeleton/mybibfile.bib‎

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@article{Dirac1953888,
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title = "The lorentz transformation and absolute time",
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journal = "Physica ",
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volume = "19",
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number = "1-–12",
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pages = "888--896",
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year = "1953",
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doi = "10.1016/S0031-8914(53)80099-6",
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author = "P.A.M. Dirac"
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}
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@article{Feynman1963118,
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title = "The theory of a general quantum system interacting with a linear dissipative system",
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journal = "Annals of Physics ",
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volume = "24",
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pages = "118--173",
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year = "1963",
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doi = "10.1016/0003-4916(63)90068-X",
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author = "R.P Feynman and F.L {Vernon Jr.}"
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}

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