diff --git a/VCFv4.5.tex b/VCFv4.5.tex index 0530513b..ed368883 100644 --- a/VCFv4.5.tex +++ b/VCFv4.5.tex @@ -357,6 +357,14 @@ \subsubsection{Pedigree field format} \noindent See \ref{PedigreeInDetail} for details. +\subsubsection{Sequence collection format} +The reference sequences can be recorded as a sequence collection identifier\footnote{\url{https://ga4gh.github.io/refget/seqcols/}} +\begin{verbatim} +##seqcol= +\end{verbatim} +The ID section should contain the sequence collection identifier of the reference sequence that was used to generate the VCF prefixed with ga4gh:SC. +Only one refget-seqcol entry can be added per VCF. + \subsection{Header line syntax} \label{header-line} The mandatory header line names the 8 fixed, mandatory columns. These columns are as follows: