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yevis-metadata_nf-core_rnaseq.yml
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yevis-metadata_nf-core_rnaseq.yml
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---
id: 20da6ea5-de91-4973-ac20-216882357a0d
version: 1.0.0
license: CC0-1.0
authors:
- github_account: suecharo
name: Hirotaka Suetake
affiliation: "The University of Tokyo"
orcid: 0000-0003-2765-0049
workflow:
name: nf-core - rnaseq - v3.7
readme: "https://raw.githubusercontent.com/nf-core/rnaseq/e0dfce9af5c2299bcc2b8a74b6559ce055965455/README.md"
language:
type: NFL
version: "1.0"
files:
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type: secondary
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target: README.md
type: secondary
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type: secondary
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target: assets/email_template.txt
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type: secondary
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type: secondary
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target: assets/samplesheet.csv
type: secondary
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target: assets/schema_input.json
type: secondary
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target: bin/check_samplesheet.py
type: secondary
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target: bin/deseq2_qc.r
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target: bin/dupradar.r
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target: bin/fasta2gtf.py
type: secondary
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target: bin/fastq_dir_to_samplesheet.py
type: secondary
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target: bin/filter_gtf_for_genes_in_genome.py
type: secondary
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target: bin/gtf2bed
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target: bin/mqc_features_stat.py
type: secondary
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target: bin/salmon_summarizedexperiment.r
type: secondary
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target: bin/salmon_tx2gene.py
type: secondary
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target: bin/salmon_tximport.r
type: secondary
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target: conf/base.config
type: secondary
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target: conf/igenomes.config
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type: secondary
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type: secondary
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type: secondary
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target: lib/nfcore_external_java_deps.jar
type: secondary
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target: main.nf
type: primary
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target: modules.json
type: secondary
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type: secondary
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target: modules/local/gtf2bed.nf
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target: modules/local/multiqc_tsv_from_list.nf
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type: secondary
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type: secondary
- url: "https://raw.githubusercontent.com/nf-core/rnaseq/e0dfce9af5c2299bcc2b8a74b6559ce055965455/modules/nf-core/modules/rseqc/inferexperiment/meta.yml"
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type: secondary
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type: secondary
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type: secondary
- url: "https://raw.githubusercontent.com/nf-core/rnaseq/e0dfce9af5c2299bcc2b8a74b6559ce055965455/modules/nf-core/modules/rseqc/tin/meta.yml"
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type: secondary
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target: modules/nf-core/modules/salmon/quant/main.nf
type: secondary
- url: "https://raw.githubusercontent.com/nf-core/rnaseq/e0dfce9af5c2299bcc2b8a74b6559ce055965455/modules/nf-core/modules/salmon/quant/meta.yml"
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type: secondary
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- url: "https://raw.githubusercontent.com/nf-core/rnaseq/e0dfce9af5c2299bcc2b8a74b6559ce055965455/modules/nf-core/modules/stringtie/stringtie/meta.yml"
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- url: "https://raw.githubusercontent.com/nf-core/rnaseq/e0dfce9af5c2299bcc2b8a74b6559ce055965455/modules/nf-core/modules/untar/main.nf"
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target: nextflow_schema.json
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- url: "https://raw.githubusercontent.com/nf-core/rnaseq/e0dfce9af5c2299bcc2b8a74b6559ce055965455/subworkflows/local/align_star.nf"
target: subworkflows/local/align_star.nf
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- url: "https://raw.githubusercontent.com/nf-core/rnaseq/e0dfce9af5c2299bcc2b8a74b6559ce055965455/subworkflows/local/input_check.nf"
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- url: "https://raw.githubusercontent.com/nf-core/rnaseq/e0dfce9af5c2299bcc2b8a74b6559ce055965455/subworkflows/local/prepare_genome.nf"
target: subworkflows/local/prepare_genome.nf
type: secondary
- url: "https://raw.githubusercontent.com/nf-core/rnaseq/e0dfce9af5c2299bcc2b8a74b6559ce055965455/subworkflows/local/quantify_rsem.nf"
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- url: "https://raw.githubusercontent.com/nf-core/rnaseq/e0dfce9af5c2299bcc2b8a74b6559ce055965455/subworkflows/nf-core/bam_stats_samtools.nf"
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type: secondary
- url: "https://raw.githubusercontent.com/nf-core/rnaseq/e0dfce9af5c2299bcc2b8a74b6559ce055965455/subworkflows/nf-core/bedgraph_to_bigwig.nf"
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- url: "https://raw.githubusercontent.com/nf-core/rnaseq/e0dfce9af5c2299bcc2b8a74b6559ce055965455/subworkflows/nf-core/dedup_umi_umitools.nf"
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- url: "https://raw.githubusercontent.com/nf-core/rnaseq/e0dfce9af5c2299bcc2b8a74b6559ce055965455/subworkflows/nf-core/rseqc.nf"
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target: tower.yml
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- url: "https://raw.githubusercontent.com/nf-core/rnaseq/e0dfce9af5c2299bcc2b8a74b6559ce055965455/workflows/rnaseq.nf"
target: workflows/rnaseq.nf
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testing:
- id: example_test
files:
- url: "https://gist.github.com/e42b4a98990ac8894a975223d41bfaeb"
target: wf_engine_params.json
type: wf_engine_params