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We should finalize naming for things. I'm starting a list here of things to resolve
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GeneRangesFilter->GeneRangeFilter(since it only takes a single range) -
CanonicalFilter-> ??? -
genes(cols=...)->genes(columns=...)– Just to be more consistent. Could go the other way and usecolseverywhere. - What are the canonical strand names?
+,-I assume?
Pushing to next release:
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GeneRangeFilter+TxRangeFilter+ExonFilteror all oneRangeFilteras done in bioconductor? -
gf.ensembl.annotationDo we still want to call this an annotation? I named the function when the package was calledgenomic-annotations