diff --git a/.github/workflows/integration-test.yml b/.github/workflows/integration-test.yml index b149ab6..e135bbb 100644 --- a/.github/workflows/integration-test.yml +++ b/.github/workflows/integration-test.yml @@ -30,6 +30,7 @@ jobs: - {name: "scvi-tools", extras: ""} - {name: "pertpy", extras: "de"} - {name: "decoupler", extras: ""} + - {name: "SnapATAC2", extras: ""} defaults: run: @@ -52,6 +53,7 @@ jobs: - uses: actions/checkout@v4 with: repository: scverse/${{ matrix.package.name }} + ref: 'ig/unfiform_layout' fetch-depth: 0 filter: blob:none path: ${{ matrix.package.name }} @@ -63,6 +65,10 @@ jobs: - name: Install UV uses: hynek/setup-cached-uv@v2 + + # For snapatac2 + - name: Install rust-cache + uses: Swatinem/rust-cache@v2 - name: Install AnnData and scverse package run: | diff --git a/scvi-tools b/scvi-tools new file mode 160000 index 0000000..c338ca0 --- /dev/null +++ b/scvi-tools @@ -0,0 +1 @@ +Subproject commit c338ca01b54dff7940ab31aed7b7e9c6c7180f1e