fix sphinx ref

Signed-off-by: Lukas Heumos <[email protected]>

Author: Zethson

pertpy/tools/_milo.py

@@ -84,7 +84,7 @@ def make_nhoods(
             If `copy=True`, returns the copy of `adata` with the result in `.obs`, `.obsm`, and `.uns`.
             Otherwise:
 
-            nhoods: scipy.sparse._csr.csr_matrix in `adata.obsm['nhoods']`.
+            nhoods: :class:`scipy.sparse.csr_matrix` in `adata.obsm['nhoods']`.
             A binary matrix of cell to neighbourhood assignments. Neighbourhoods in the columns are ordered by the order of the index cell in adata.obs_names
 
             nhood_ixs_refined: pandas.Series in `adata.obs['nhood_ixs_refined']`.

pyproject.toml

@@ -7,7 +7,7 @@ name = "pertpy"
 version = "1.0.3"
 description = "Perturbation Analysis in the scverse ecosystem."
 readme = "README.md"
-requires-python = ">=3.11,<3.14"
+requires-python = ">=3.12,<3.14"
 license = {file = "LICENSE"}
 authors = [
     {name = "Lukas Heumos"},
@@ -67,6 +67,7 @@ dependencies = [
     "fast-array-utils[accel,sparse]",
     "lamin_utils",
     "arviz",
+    "filelock"
 ]
 
 [project.optional-dependencies]