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2+ [ ![ PyPI Downloads] ( https://static.pepy.tech/badge/vcztools )] ( https://pepy.tech/projects/vcztools )
23
34# vcztools
45Partial reimplementation of bcftools for [ VCF Zarr] ( https://github.com/sgkit-dev/vcf-zarr-spec/ )
@@ -17,24 +18,24 @@ python3 -m pip install vcztools
1718```
1819vcztools view <path.vcz>
1920```
20- or
21+ or
2122```
2223python -m vcztools view <path.vcz>
2324```
24- should be equivalent to running
25+ should be equivalent to running
2526```
2627bcftools view <path.vcf.gz>
2728```
2829
29- See the [ bio2zarr] ( https://sgkit-dev.github.io/bio2zarr/ ) project for help in
30+ See the [ bio2zarr] ( https://sgkit-dev.github.io/bio2zarr/ ) project for help in
3031converting VCF files to Zarr.
3132
3233## Goals
3334
3435Vcztools aims to be a drop-in replacement for a subset of bcftools functionality.
3536Currently supported are the `` view `` , `` query `` and `` index -s/-n `` commands.
3637
37- We aim for 100% compatibility so if you notice a difference between the output of
38+ We aim for 100% compatibility so if you notice a difference between the output of
3839vcztools and bcftools please do open an issue.
3940
4041## Cloud stores
@@ -62,6 +63,6 @@ python -m vcztools view s3://<bucket-name>/path/to.vcz
6263
6364## Development
6465
65- Vcztools is under active development and contributions are warmly welcomed. Please
66+ Vcztools is under active development and contributions are warmly welcomed. Please
6667see the project on [ GitHub] ( https://github.com/sgkit-dev/vcztools ) .
6768
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