-
Notifications
You must be signed in to change notification settings - Fork 2
/
Copy pathMakefile
70 lines (52 loc) · 3.58 KB
/
Makefile
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
all: anova pca
anova: ../kidney2/kidney_anova_table.csv \
../heart2/heart_anova_table.csv \
../kidney2/kidney_anova_mrna_table.csv \
../heart2/heart_anova_mrna_table.csv
pca: ../kidney2/kidney_pca_loadings.csv \
../heart2/heart_pca_loadings.csv \
../kidney2/kidney_pca_loadings_mrna.csv \
../heart2/heart_pca_loadings_mrna.csv
predictions: glmnet
glmnet: ../kidney2/kidney_predict_glmnet.csv \
../heart2/heart_predict_glmnet.csv
../kidney2/kidney_anova_table.csv: code/anova_tests.R ../kidney2/R/DO188b_kidney_noprobs.RData
Rscript code/anova_tests.R ../kidney2/R/DO188b_kidney_noprobs.RData \
../kidney2/kidney_anova_table.csv
../heart2/heart_anova_table.csv: code/anova_tests.R ../heart2/DO189_heart_v2_noprobs.RData
Rscript code/anova_tests.R ../heart2/DO189_heart_v2_noprobs.RData \
../heart2/heart_anova_table.csv
../kidney2/kidney_anova_mrna_table.csv: code/anova_tests_mrna.R ../kidney2/R/DO188b_kidney_noprobs.RData
Rscript code/anova_tests_mrna.R ../kidney2/R/DO188b_kidney_noprobs.RData \
../kidney2/kidney_anova_mrna_table.csv
../heart2/heart_anova_mrna_table.csv: code/anova_tests_mrna.R ../heart2/DO189_heart_v2_noprobs.RData
Rscript code/anova_tests_mrna.R ../heart2/DO189_heart_v2_noprobs.RData \
../heart2/heart_anova_mrna_table.csv
../kidney2/kidney_pca_loadings.csv: code/pca.R ../kidney2/R/DO188b_kidney_noprobs.RData
Rscript code/pca.R ../kidney2/R/DO188b_kidney_noprobs.RData \
../kidney2/kidney_pca_loadings.csv ../kidney2/kidney_pca_predict.csv
../kidney2/kidney_pca_predict.csv: code/pca.R ../kidney2/R/DO188b_kidney_noprobs.RData
Rscript code/pca.R ../kidney2/R/DO188b_kidney_noprobs.RData \
../kidney2/kidney_pca_loadings.csv ../kidney2/kidney_pca_predict.csv
../heart2/heart_pca_loadings.csv: code/pca.R ../heart2/DO189_heart_v2_noprobs.RData
Rscript code/pca.R ../heart2/DO189_heart_v2_noprobs.RData \
../heart2/heart_pca_loadings.csv ../heart2/heart_pca_predict.csv
../heart2/heart_pca_predict.csv: code/pca.R ../heart2/DO189_heart_v2_noprobs.RData
Rscript code/pca.R ../heart2/DO189_heart_v2_noprobs.RData \
../heart2/heart_pca_loadings.csv ../heart2/heart_pca_predict.csv
../kidney2/kidney_pca_loadings_mrna.csv: code/pca_mrna.R ../kidney2/R/DO188b_kidney_noprobs.RData
Rscript code/pca_mrna.R ../kidney2/R/DO188b_kidney_noprobs.RData \
../kidney2/kidney_pca_loadings_mrna.csv ../kidney2/kidney_pca_predict_mrna.csv
../kidney2/kidney_pca_predict_mrna.csv: code/pca_mrna.R ../kidney2/R/DO188b_kidney_noprobs.RData
Rscript code/pca_mrna.R ../kidney2/R/DO188b_kidney_noprobs.RData \
../kidney2/kidney_pca_loadings_mrna.csv ../kidney2/kidney_pca_predict_mrna.csv
../heart2/heart_pca_loadings_mrna.csv: code/pca_mrna.R ../heart2/DO189_heart_v2_noprobs.RData
Rscript code/pca_mrna.R ../heart2/DO189_heart_v2_noprobs.RData \
../heart2/heart_pca_loadings_mrna.csv ../heart2/heart_pca_predict_mrna.csv
../heart2/heart_pca_predict_mrna.csv: code/pca_mrna.R ../heart2/DO189_heart_v2_noprobs.RData
Rscript code/pca_mrna.R ../heart2/DO189_heart_v2_noprobs.RData \
../heart2/heart_pca_loadings_mrna.csv ../heart2/heart_pca_predict_mrna.csv
../kidney2/kidney_predict_glmnet.csv: code/predict_glmnet.R ../kidney2/R/DO188b_kidney_noprobs.RData
Rscript code/predict_glmnet.R ../kidney2/R/DO188b_kidney_noprobs.RData ../kidney2/kidney_predict_glmnet.csv
../heart2/heart_predict_glmnet.csv: code/predict_glmnet.R ../heart2/DO189_heart_v2_noprobs.RData
Rscript code/predict_glmnet.R ../heart2/DO189_heart_v2_noprobs.RData ../heart2/heart_predict_glmnet.csv