Merge pull request #769 from apcamargo/vtml200

Add the VTML200 substitution matrix

Author: martin-steinegger

data/VTML200.out

@@ -0,0 +1,32 @@
+#
+#  VTML_200
+#
+# This matrix was produced from: vtml_200qij.mat using vtml_P.mat background frequencies
+#
+# VTML_200 substitution matrix, Units = bits/3.0
+# Expected score = -0.358430 bits; Entropy = 0.412084 bits
+# Target fraction identity = 0.2295
+# Lowest Score = -6, Highest Score= 15
+#
+	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	X
+A	4	1	-1	-1	-3	0	-2	-1	-1	-2	-1	-1	0	-1	-2	1	1	0	-4	-3	0
+C	1	12	-4	-4	-3	-2	-2	0	-4	-3	-1	-2	-3	-3	-3	1	0	1	-6	0	0
+D	-1	-4	6	3	-6	-1	0	-5	0	-5	-4	3	-1	1	-2	0	-1	-4	-6	-4	0
+E	-1	-4	3	5	-5	-1	0	-4	1	-4	-3	1	-1	2	-1	0	-1	-3	-6	-3	0
+F	-3	-3	-6	-5	8	-5	0	0	-5	2	1	-4	-4	-3	-4	-3	-3	-1	3	5	0
+G	0	-2	-1	-1	-5	8	-2	-6	-2	-5	-4	0	-2	-2	-2	0	-2	-4	-5	-5	0
+H	-2	-2	0	0	0	-2	8	-3	0	-2	-3	1	-2	2	1	0	-1	-3	-1	3	0
+I	-1	0	-5	-4	0	-6	-3	5	-3	3	2	-4	-4	-3	-3	-3	-1	4	-2	-2	0
+K	-1	-4	0	1	-5	-2	0	-3	5	-3	-2	1	-1	2	4	0	0	-3	-4	-3	0
+L	-2	-3	-5	-4	2	-5	-2	3	-3	5	3	-4	-3	-2	-3	-3	-2	2	-1	-1	0
+M	-1	-1	-4	-3	1	-4	-3	2	-2	3	6	-3	-3	-1	-2	-2	-1	2	-3	-2	0
+N	-1	-2	3	1	-4	0	1	-4	1	-4	-3	6	-2	1	0	1	0	-3	-5	-2	0
+P	0	-3	-1	-1	-4	-2	-2	-4	-1	-3	-3	-2	9	-1	-1	0	-1	-3	-4	-5	0
+Q	-1	-3	1	2	-3	-2	2	-3	2	-2	-1	1	-1	5	2	0	0	-2	-6	-3	0
+R	-2	-3	-2	-1	-4	-2	1	-3	4	-3	-2	0	-1	2	7	-1	-1	-3	-3	-2	0
+S	1	1	0	0	-3	0	0	-3	0	-3	-2	1	0	0	-1	4	2	-2	-4	-2	0
+T	1	0	-1	-1	-3	-2	-1	-1	0	-2	-1	0	-1	0	-1	2	4	0	-5	-3	0
+V	0	1	-4	-3	-1	-4	-3	4	-3	2	2	-3	-3	-2	-3	-2	0	4	-4	-2	0
+W	-4	-6	-6	-6	3	-5	-1	-2	-4	-1	-3	-5	-4	-6	-3	-4	-5	-4	15	4	0
+Y	-3	0	-4	-3	5	-5	3	-2	-3	-1	-2	-2	-5	-3	-2	-2	-3	-2	4	9	0
+X	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1