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In order to be used as a replacement to the PAM50 template, the dog template should come with:
templatedog_t1w.nii.gz: The current T1w template
templatedog_t2w.nii.gz: The current T2w template
templatedog_cord.nii.gz: a spinal cord segmentation (equivalent to PAM50_cord.nii.gz)
templatedog_label_disc.nii.gz: intervertebral discs (equivalent to PAM50_label_disc.nii.gz)
templatedog_levels.nii.gz: spinal cord segmentation labeled for vertebral level (equivalent to PAM50_levels.nii.gz)
info_label.txt: TXT file describing each file present in the template package. This file is used by sct_register_to_template
Once generated, these files should be packaged inside a template folder, and that folder should be enclosed into another folder called templatedog, and then zipped and uploaded as a release asset. See latest PAM50 release for inspiration.
The text was updated successfully, but these errors were encountered:
Context: https://forum.spinalcordmri.org/t/integrating-dog-template/1179
In order to be used as a replacement to the PAM50 template, the dog template should come with:
templatedog_t1w.nii.gz
: The current T1w templatetemplatedog_t2w.nii.gz
: The current T2w templatetemplatedog_cord.nii.gz
: a spinal cord segmentation (equivalent toPAM50_cord.nii.gz
)templatedog_label_disc.nii.gz
: intervertebral discs (equivalent toPAM50_label_disc.nii.gz
)templatedog_levels.nii.gz
: spinal cord segmentation labeled for vertebral level (equivalent toPAM50_levels.nii.gz
)info_label.txt
: TXT file describing each file present in the template package. This file is used bysct_register_to_template
Once generated, these files should be packaged inside a
template
folder, and that folder should be enclosed into another folder calledtemplatedog
, and then zipped and uploaded as a release asset. See latest PAM50 release for inspiration.The text was updated successfully, but these errors were encountered: